Rmu_sc0000091.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000091.1
N/A
Physical Location & Seq
Reverse (-)
17383 .. 20256
2874 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 792 bp
atgatgaaggagattgaggtagctcaatcaagacccctggtgaaggaggtatgccccacttgtggcaaccatgactcaaatgagagtacatggatgatgttccctagaactgatgtctttgcaaggattccatttcatgctgctcataccatcttggagaaagccctgctgcagcctactgctgcccttgctgcgcaccagcccaccggcctacctgcagcccgcactgcccatctcgcctgcttgctacctacagcaatgcacgccccttgcgtccttgctgctttcctcgcccagctcgcctattgccgcaagcccagcagcccgcgctgctttctgccttccgctactgcaagccagcgccctgcgtccttgcaagctcgcccgcgccctgcctgcctgcctgcgatgtcgaatgaacctagactcgactttcccatgcttgaatcaacaggctcggattaccacagttgggtaaccgatgttgagaaccatctcacttcaaagggaatattacccataatccaagcacctaagccgaatcttgtgttcatgcggacacttacaatgtatgctcaagcagttatcttgatgcgtcgccatatggagaagacactcagattggagtatatgtcgatcaagaatgcaagagagctatgggtagtgctagaagagcgctttggcaatgtccaagattccatcctccctgacttgaaggttcaatggaacaatctgcgctttgttgatttcaagtctgttgctgaatataattcagaagctcttctcatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

263

Amino Acids

29.55

Weight (kDa)

8.7

Isoelectric Point (pI)

56.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 195
Acc36I ACCTGC 1 cut(s) 223
AccII CGCG 2 cut(s) 328, 388
AciI CCGC 6 cut(s) 223, 310, 326, 345, 386, 556
AfaI GTAC 1 cut(s) 88
AfeI AGCGCT 1 cut(s) 677
AfiI CCNNNNNNNGG 3 cut(s) 43, 62, 472
AgsI TTSAA 5 cut(s) 446, 504, 715, 722, 751
AjnI CCWGG 1 cut(s) 36
AjuI GAANNNNNNNTTGG 2 cut(s) 663, 695
AluBI AGCT 5 cut(s) 23, 298, 380, 655, 779
AluI AGCT 5 cut(s) 23, 298, 380, 655, 779
Aor51HI AGCGCT 1 cut(s) 677
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 9 cut(s) 140, 169, 172, 182, 191, 218, 281, 321, 330
Asp700I GAANNNNTTC 1 cut(s) 780
AspLEI GCGC 6 cut(s) 196, 330, 363, 390, 678, 738
AsuHPI GGTGA 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 617
BbvI GCAGC 9 cut(s) 127, 156, 169, 178, 184, 230, 268, 317, 333
BccI CCATC 4 cut(s) 158, 240, 501, 707
BciT130I CCWGG 1 cut(s) 38
BfaI CTAG 3 cut(s) 105, 423, 668
BfmI CTRYAG 3 cut(s) 170, 216, 252
BfoI RGCGCY 2 cut(s) 364, 679
BfuAI ACCTGC 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 38
BmsI GCATC 1 cut(s) 582
BpiI GAAGAC 1 cut(s) 617
Bpu10I CCTNAGC 1 cut(s) 534
BpuEI CTTGAG 1 cut(s) 561
BsaJI CCNNGG 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 617, 647
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 62, 472
Bse118I RCCGGY 1 cut(s) 206
Bse3DI GCAATG 2 cut(s) 264, 691
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 2 cut(s) 99, 699
BseLI CCNNNNNNNGG 3 cut(s) 43, 62, 472
BseMI GCAATG 2 cut(s) 264, 691
BseMII CTCAG 1 cut(s) 631
BseXI GCAGC 9 cut(s) 127, 156, 169, 178, 184, 230, 268, 317, 333
BseYI CCCAGC 2 cut(s) 294, 317
Bsh1236I CGCG 2 cut(s) 328, 388
BshFI GGCC 1 cut(s) 210
BsiSI CCGG 1 cut(s) 207
BslI CCNNNNNNNGG 3 cut(s) 43, 62, 472
BsmI GAATGC 1 cut(s) 649
BsnI GGCC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 636
BspACI CCGC 6 cut(s) 223, 310, 326, 345, 386, 556
BspANI GGCC 1 cut(s) 210
BspCNI CTCAG 1 cut(s) 630
BspFNI CGCG 2 cut(s) 328, 388
BspMAI CTGCAG 2 cut(s) 174, 220
BspMI ACCTGC 1 cut(s) 223
BspQI GCTCTTC 2 cut(s) 666, 786
BsrDI GCAATG 2 cut(s) 264, 691
BsrFI RCCGGY 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 1 cut(s) 636
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 470
Bst6I CTCTTC 2 cut(s) 666, 786
BstDEI CTNAG 2 cut(s) 534, 617
BstEII GGTNACC 1 cut(s) 475
BstENI CCTNNNNNAGG 1 cut(s) 41
BstF5I GGATG 2 cut(s) 99, 699
BstFNI CGCG 2 cut(s) 328, 388
BstH2I RGCGCY 2 cut(s) 364, 679
BstHHI GCGC 6 cut(s) 196, 330, 363, 390, 678, 738
BstKTI GATC 1 cut(s) 639
BstMBI GATC 1 cut(s) 636
BstNI CCWGG 1 cut(s) 38
BstPI GGTNACC 1 cut(s) 475
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 3 cut(s) 170, 216, 252
BstUI CGCG 2 cut(s) 328, 388
BstV1I GCAGC 9 cut(s) 127, 156, 169, 178, 184, 230, 268, 317, 333
BstV2I GAAGAC 1 cut(s) 617
BsuRI GGCC 1 cut(s) 210
BtgZI GCGATG 1 cut(s) 422
BtsCI GGATG 2 cut(s) 99, 699
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 225
BveI ACCTGC 1 cut(s) 223
CfoI GCGC 6 cut(s) 196, 330, 363, 390, 678, 738
Cfr10I RCCGGY 1 cut(s) 206
CseI GACGC 3 cut(s) 262, 357, 584
Csp6I GTAC 1 cut(s) 87
CviAII CATG 5 cut(s) 71, 90, 137, 439, 553
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 2 cut(s) 534, 617
DpnI GATC 1 cut(s) 638
DpnII GATC 1 cut(s) 636
Eam1104I CTCTTC 2 cut(s) 666, 786
EarI CTCTTC 2 cut(s) 666, 786
Eco47III AGCGCT 1 cut(s) 677
Eco91I GGTNACC 1 cut(s) 475
EcoNI CCTNNNNNAGG 1 cut(s) 41
EcoO65I GGTNACC 1 cut(s) 475
EcoRII CCWGG 1 cut(s) 36
FaeI CATG 5 cut(s) 74, 93, 140, 442, 556
FatI CATG 5 cut(s) 70, 89, 136, 438, 552
FauI CCCGC 3 cut(s) 230, 333, 393
FauNDI CATATG 1 cut(s) 603
FokI GGATG 2 cut(s) 106, 686
FspBI CTAG 3 cut(s) 105, 423, 668
FspI TGCGCA 1 cut(s) 195
GlaI GCGC 6 cut(s) 195, 329, 362, 389, 677, 737
GsaI CCCAGC 2 cut(s) 298, 321
HaeII RGCGCY 2 cut(s) 364, 679
HaeIII GGCC 1 cut(s) 210
HapII CCGG 1 cut(s) 207
HgaI GACGC 3 cut(s) 262, 357, 584
HhaI GCGC 6 cut(s) 196, 330, 363, 390, 678, 738
Hin1II CATG 5 cut(s) 74, 93, 140, 442, 556
Hin6I GCGC 6 cut(s) 194, 328, 361, 388, 676, 736
HinP1I GCGC 6 cut(s) 194, 328, 361, 388, 676, 736
HinfI GANTC 6 cut(s) 74, 127, 426, 446, 541, 695
HpaII CCGG 1 cut(s) 207
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 3 cut(s) 460, 620, 775
Hpy188III TCNNGA 3 cut(s) 30, 589, 640
Hpy99I CGWCG 1 cut(s) 600
HpyAV CCTTC 3 cut(s) 37, 351, 709
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4V TGCA 7 cut(s) 122, 172, 218, 262, 353, 376, 647
HpyF3I CTNAG 2 cut(s) 534, 617
Hsp92II CATG 5 cut(s) 74, 93, 140, 442, 556
HspAI GCGC 6 cut(s) 194, 328, 361, 388, 676, 736
Kzo9I GATC 1 cut(s) 636
LguI GCTCTTC 2 cut(s) 666, 786
Lsp1109I GCAGC 9 cut(s) 127, 156, 169, 178, 184, 230, 268, 317, 333
LweI GCATC 1 cut(s) 582
MaeI CTAG 3 cut(s) 105, 423, 668
MaeIII GTNAC 1 cut(s) 475
MalI GATC 1 cut(s) 638
MboI GATC 1 cut(s) 636
MboII GAAGA 3 cut(s) 622, 683, 773
MluCI AATT 1 cut(s) 769
MlyI GAGTC 2 cut(s) 68, 420
MnlI CCTC 4 cut(s) 10, 40, 299, 713
MroXI GAANNNNTTC 1 cut(s) 780
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 38
Mva1269I GAATGC 1 cut(s) 649
MvaI CCWGG 1 cut(s) 38
MvnI CGCG 2 cut(s) 328, 388
NdeI CATATG 1 cut(s) 603
NdeII GATC 1 cut(s) 636
NlaIII CATG 5 cut(s) 74, 93, 140, 442, 556
NsbI TGCGCA 1 cut(s) 195
PciSI GCTCTTC 2 cut(s) 666, 786
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PctI GAATGC 1 cut(s) 649
PdmI GAANNNNTTC 1 cut(s) 780
PfeI GAWTC 4 cut(s) 127, 446, 541, 695
PleI GAGTC 2 cut(s) 68, 420
PpsI GAGTC 2 cut(s) 68, 420
Psp6I CCWGG 1 cut(s) 36
PspEI GGTNACC 1 cut(s) 475
PspFI CCCAGC 2 cut(s) 294, 317
PspGI CCWGG 1 cut(s) 36
PstI CTGCAG 2 cut(s) 174, 220
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SapI GCTCTTC 2 cut(s) 666, 786
Sau3AI GATC 1 cut(s) 636
SchI GAGTC 2 cut(s) 68, 420
ScrFI CCNGG 1 cut(s) 38
SfaNI GCATC 1 cut(s) 582
SfcI CTRYAG 3 cut(s) 170, 216, 252
SmlI CTYRAG 1 cut(s) 576
SmoI CTYRAG 1 cut(s) 576
Sse9I AATT 1 cut(s) 769
SsiI CCGC 6 cut(s) 223, 310, 326, 345, 386, 556
SspI AATATT 1 cut(s) 513
SspMI CTAG 3 cut(s) 105, 423, 668
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 470
TaqI TCGA 3 cut(s) 413, 429, 635
TasI AATT 1 cut(s) 769
TatI WGTACW 1 cut(s) 86
TauI GCSGC 1 cut(s) 312
TfiI GAWTC 4 cut(s) 127, 446, 541, 695
TscAI CASTG 1 cut(s) 232
TseI GCWGC 9 cut(s) 140, 169, 172, 182, 191, 218, 281, 321, 330
TspDTI ATGAA 4 cut(s) 20, 125, 432, 541
TspRI CASTG 1 cut(s) 232
XagI CCTNNNNNAGG 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 780
XspI CTAG 3 cut(s) 105, 423, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.