Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000102.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4565 .. 5236

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgatggattcctcttctggtaaccacaaaactgaaaagggaagaaccttgacttcaagtgttcatgctaatggggatatgtttggacgagttgtaaatggtactggtgagactgaaggtttaccagaaactgcttcatatgaggacttgagatcagtattgattgatggtaccattttatgtaggctattgaacaggcttagaccttgttctgttgacgaggttgatttcctagtctccccctacaagttatttaccagttggattgaatggctgggatctatgaagactgttatagattgtcttttaacacttagaacacgacttgggtcaagtgttgcagcagaaggtttttctctatttagtccaactggtaactatgacagccctcaaagggatttatcttcccgtggatttagttctccattaactgtagaagagaggcagaaggtctttgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

153

Amino Acids

16.87

Weight (kDa)

5.39

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	170
AclWI	GGATC	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	2 cut(s)	103, 172
AfiI	CCNNNNNNNGG	1 cut(s)	394
AgsI	TTSAA	3 cut(s)	57, 193, 269
Alw26I	GTCTC	2 cut(s)	104, 241
AlwI	GGATC	1 cut(s)	286
AlwNI	CAGNNNCTG	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	341
Asp718I	GGTACC	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	1 cut(s)	161
BcoDI	GTCTC	2 cut(s)	104, 241
BfaI	CTAG	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	432
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
BmiI	GGNNCC	1 cut(s)	172
BoxI	GACNNNNGTC	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	293
BpuEI	CTTGAG	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse1I	ACTGG	3 cut(s)	109, 258, 376
BseDI	CCNNGG	1 cut(s)	409
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseNI	ACTGG	3 cut(s)	109, 258, 376
BseXI	GCAGC	1 cut(s)	353
BseYI	CCCAGC	1 cut(s)	274
BshNI	GGYRCC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	2 cut(s)	104, 241
Bsp143I	GATC	2 cut(s)	152, 278
BspLI	GGNNCC	1 cut(s)	172
BspPI	GGATC	1 cut(s)	286
BspT107I	GGYRCC	1 cut(s)	170
BsrI	ACTGG	3 cut(s)	109, 258, 376
BssECI	CCNNGG	1 cut(s)	409
BssMI	GATC	2 cut(s)	152, 278
Bst4CI	ACNGT	2 cut(s)	292, 433
Bst6I	CTCTTC	2 cut(s)	19, 432
BstDEI	CTNAG	2 cut(s)	200, 314
BstDSI	CCRYGG	1 cut(s)	409
BstEII	GGTNACC	1 cut(s)	20
BstKTI	GATC	2 cut(s)	155, 281
BstMAI	GTCTC	2 cut(s)	104, 241
BstMBI	GATC	2 cut(s)	152, 278
BstPAI	GACNNNNGTC	1 cut(s)	328
BstPI	GGTNACC	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	353
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
BtgI	CCRYGG	1 cut(s)	409
CaiI	CAGNNNCTG	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	102, 171
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	4 cut(s)	187, 199, 274, 387
CviKI_1	RGCY	4 cut(s)	187, 199, 274, 387
CviQI	GTAC	2 cut(s)	102, 171
DdeI	CTNAG	2 cut(s)	200, 314
DpnI	GATC	2 cut(s)	154, 280
DpnII	GATC	2 cut(s)	152, 278
Eam1104I	CTCTTC	2 cut(s)	19, 432
EarI	CTCTTC	2 cut(s)	19, 432
Eco57I	CTGAAG	1 cut(s)	135
Eco91I	GGTNACC	1 cut(s)	20
EcoO65I	GGTNACC	1 cut(s)	20
FaeI	CATG	1 cut(s)	68
FaiI	YATR	9 cut(s)	66, 80, 139, 141, 181, 284, 296, 381, 460
FatI	CATG	1 cut(s)	64
FauNDI	CATATG	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	342
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	1 cut(s)	342
GsaI	CCCAGC	1 cut(s)	278
Hin1II	CATG	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	2 cut(s)	122, 217
Hpy8I	GTNNAC	2 cut(s)	122, 217
HpyAV	CCTTC	3 cut(s)	110, 341, 442
HpyCH4III	ACNGT	2 cut(s)	292, 433
HpyCH4V	TGCA	1 cut(s)	341
HpyF3I	CTNAG	2 cut(s)	200, 314
Hsp92II	CATG	1 cut(s)	68
KpnI	GGTACC	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	152, 278
LpnPI	CCDG	7 cut(s)	3, 90, 138, 181, 260, 271, 357
Lsp1109I	GCAGC	1 cut(s)	353
MaeI	CTAG	1 cut(s)	233
MaeIII	GTNAC	2 cut(s)	20, 374
MalI	GATC	2 cut(s)	154, 280
MboI	GATC	2 cut(s)	152, 278
MboII	GAAGA	5 cut(s)	6, 54, 298, 396, 449
MflI	RGATCY	1 cut(s)	278
MmeI	TCCRAC	2 cut(s)	242, 392
MnlI	CCTC	5 cut(s)	22, 136, 214, 399, 435
MseI	TTAA	2 cut(s)	308, 428
MslI	CAYNNNNRTG	1 cut(s)	69
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	2 cut(s)	152, 278
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	343
PshAI	GACNNNNGTC	1 cut(s)	328
PspEI	GGTNACC	1 cut(s)	20
PspFI	CCCAGC	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	278
RsaI	GTAC	2 cut(s)	103, 172
RsaNI	GTAC	2 cut(s)	102, 171
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	308, 428
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	2 cut(s)	152, 278
SetI	ASST	6 cut(s)	50, 121, 208, 225, 352, 453
SfcI	CTRYAG	1 cut(s)	432
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
SspMI	CTAG	1 cut(s)	233
TaaI	ACNGT	2 cut(s)	292, 433
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	2 cut(s)	308, 428
Tru9I	TTAA	2 cut(s)	308, 428
TseI	GCWGC	1 cut(s)	341
TspDTI	ATGAA	3 cut(s)	53, 126, 299
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.