Rmu_sc0000103.1_g000008

Protein translation factor SUI1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000103.1
N/A
Physical Location & Seq
Reverse (-)
30330 .. 33348
3019 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 714 bp
atgaccagctgttctcactccgtggtcttcatcttgggtggtatgatcaaaattacctattcacaagtaaattggttttatcctccatccatagaagattgttcatattcatatctttcatttccaccacttgttccgcttccaccctctccaccatcatcagaactatctgaagctgctgtaccaccccgcgcatcatcactatctgaattatcttatggaccctaccgtcaaccgcgcttgacgcctctatataaacaccccagggggctctggacgtttctcaaccaaatcattgttgttgtatcgaagcttgttcttttgggtaaggtttcgggagcaaagccttacccccattttgaattcctcttcttcgatcaggcttcctttgtacgtttagagatccatcaagcaaagcacatatatgcgagagacgcagatgccccgggggccaaggagtatgtgcatatccgtgtgcagcaaaggaatgggaagaagtgcctgacaacagttcaagggctgaagaaggacttcagctacgagaagatactcaaggatctcaagaaagagttctgctgcaacggcaatgtggttcaggacaaagagctcggcaagataatccagctccaaggcgatcagcgcaagaacgtgctccagtttcttgttcaggcaagaattgtcaagaaggagcagatcaagattcatggtttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
SUI1

Protein Analysis

237

Amino Acids

26.95

Weight (kDa)

9.47

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUI1 PF01253 152 - 224 3.3e-24 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 228
AccII CGCG 2 cut(s) 192, 238
AciI CCGC 3 cut(s) 137, 190, 236
AclWI GGATC 2 cut(s) 397, 564
AcsI RAATTY 1 cut(s) 362
AcuI CTGAAG 3 cut(s) 192, 517, 542
AcyI GRCGYC 1 cut(s) 245
AdeI CACNNNGTG 1 cut(s) 22
AfaI GTAC 2 cut(s) 183, 393
AgsI TTSAA 2 cut(s) 362, 515
AjnI CCWGG 1 cut(s) 263
AluBI AGCT 6 cut(s) 9, 176, 313, 537, 607, 625
AluI AGCT 6 cut(s) 9, 176, 313, 537, 607, 625
Alw21I GWGCWC 2 cut(s) 609, 654
Alw26I GTCTC 1 cut(s) 426
AlwI GGATC 2 cut(s) 397, 564
Ama87I CYCGRG 1 cut(s) 445
AoxI GGCC 1 cut(s) 450
ApeKI GCWGC 3 cut(s) 176, 478, 576
ApoI RAATTY 1 cut(s) 362
Asp700I GAANNNNTTC 2 cut(s) 530, 569
AspLEI GCGC 3 cut(s) 194, 240, 642
AspS9I GGNCC 2 cut(s) 221, 450
AsuC2I CCSGG 2 cut(s) 446, 447
AvaI CYCGRG 1 cut(s) 445
AvaII GGWCC 1 cut(s) 221
BanII GRGCYC 2 cut(s) 273, 609
BarI GAAGNNNNNNTAC 2 cut(s) 165, 197
BbsI GAAGAC 1 cut(s) 19
Bbv12I GWGCWC 2 cut(s) 609, 654
BbvI GCAGC 3 cut(s) 163, 490, 563
BccI CCATC 3 cut(s) 94, 163, 414
BceAI ACGGC 1 cut(s) 598
BciT130I CCWGG 1 cut(s) 265
BclI TGATCA 1 cut(s) 45
BcnI CCSGG 2 cut(s) 446, 447
BcoDI GTCTC 1 cut(s) 426
BglI GCCNNNNNGGC 1 cut(s) 449
BisI GCNGC 3 cut(s) 177, 479, 577
BlsI GCNGC 3 cut(s) 178, 480, 578
Bme1390I CCNGG 3 cut(s) 265, 446, 447
Bme18I GGWCC 1 cut(s) 221
BmeT110I CYCGRG 1 cut(s) 445
BmgT120I GGNCC 2 cut(s) 221, 450
BmiI GGNNCC 2 cut(s) 223, 451
BmrFI CCNGG 3 cut(s) 265, 446, 447
BmsI GCATC 2 cut(s) 203, 430
BpiI GAAGAC 1 cut(s) 19
BpmI CTGGAG 1 cut(s) 638
BpuEI CTTGAG 2 cut(s) 536, 545
BpuMI CCSGG 2 cut(s) 446, 447
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 8 cut(s) 21, 263, 264, 444, 445, 446, 453, 628
Bse1I ACTGG 1 cut(s) 655
Bse3DI GCAATG 1 cut(s) 592
BseBI CCWGG 1 cut(s) 265
BseDI CCNNGG 8 cut(s) 21, 263, 264, 444, 445, 446, 453, 628
BseGI GGATG 1 cut(s) 86
BseMI GCAATG 1 cut(s) 592
BseNI ACTGG 1 cut(s) 655
BseXI GCAGC 3 cut(s) 163, 490, 563
BsgI GTGCAG 1 cut(s) 497
Bsh1236I CGCG 2 cut(s) 192, 238
BshFI GGCC 1 cut(s) 452
BsiHKAI GWGCWC 2 cut(s) 609, 654
BsiHKCI CYCGRG 1 cut(s) 445
BsiSI CCGG 1 cut(s) 446
BsmAI GTCTC 1 cut(s) 426
BsmBI CGTCTC 1 cut(s) 426
BsnI GGCC 1 cut(s) 452
BsoBI CYCGRG 1 cut(s) 445
Bsp1286I GDGCHC 3 cut(s) 273, 609, 654
Bsp143I GATC 6 cut(s) 45, 376, 402, 556, 634, 693
BspACI CCGC 3 cut(s) 137, 190, 236
BspANI GGCC 1 cut(s) 452
BspFNI CGCG 2 cut(s) 192, 238
BspLI GGNNCC 2 cut(s) 223, 451
BspPI GGATC 2 cut(s) 397, 564
BsrDI GCAATG 1 cut(s) 592
BsrI ACTGG 1 cut(s) 655
BssECI CCNNGG 8 cut(s) 21, 263, 264, 444, 445, 446, 453, 628
BssMI GATC 6 cut(s) 45, 376, 402, 556, 634, 693
BssNI GRCGYC 1 cut(s) 245
BssT1I CCWWGG 2 cut(s) 453, 628
Bst2UI CCWGG 1 cut(s) 265
Bst4CI ACNGT 2 cut(s) 230, 511
Bst6I CTCTTC 1 cut(s) 374
BstACI GRCGYC 1 cut(s) 245
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 2 cut(s) 192, 238
BstHHI GCGC 3 cut(s) 194, 240, 642
BstKTI GATC 6 cut(s) 48, 379, 405, 559, 637, 696
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 6 cut(s) 45, 376, 402, 556, 634, 693
BstMWI GCNNNNNNNGC 5 cut(s) 244, 434, 449, 582, 639
BstNI CCWGG 1 cut(s) 265
BstSCI CCNGG 3 cut(s) 263, 444, 445
BstUI CGCG 2 cut(s) 192, 238
BstV1I GCAGC 3 cut(s) 163, 490, 563
BstV2I GAAGAC 1 cut(s) 19
BstX2I RGATCY 2 cut(s) 402, 556
BstYI RGATCY 2 cut(s) 402, 556
BsuRI GGCC 1 cut(s) 452
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 86
CfoI GCGC 3 cut(s) 194, 240, 642
Cfr13I GGNCC 2 cut(s) 221, 450
Cfr9I CCCGGG 1 cut(s) 445
CseI GACGC 2 cut(s) 253, 443
Csp6I GTAC 2 cut(s) 182, 392
CviAII CATG 1 cut(s) 704
CviQI GTAC 2 cut(s) 182, 392
DpnI GATC 6 cut(s) 47, 378, 404, 558, 636, 695
DpnII GATC 6 cut(s) 45, 376, 402, 556, 634, 693
DraIII CACNNNGTG 1 cut(s) 22
DrdI GACNNNNNNGTC 1 cut(s) 228
DseDI GACNNNNNNGTC 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Ecl136II GAGCTC 1 cut(s) 607
Eco130I CCWWGG 2 cut(s) 453, 628
Eco24I GRGCYC 2 cut(s) 273, 609
Eco47I GGWCC 1 cut(s) 221
Eco53kI GAGCTC 1 cut(s) 607
Eco57I CTGAAG 3 cut(s) 192, 517, 542
Eco88I CYCGRG 1 cut(s) 445
EcoICRI GAGCTC 1 cut(s) 607
EcoRI GAATTC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 263
EcoT14I CCWWGG 2 cut(s) 453, 628
EcoT38I GRGCYC 2 cut(s) 273, 609
ErhI CCWWGG 2 cut(s) 453, 628
Esp3I CGTCTC 1 cut(s) 426
FaeI CATG 1 cut(s) 707
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FatI CATG 1 cut(s) 703
FauI CCCGC 1 cut(s) 197
FbaI TGATCA 1 cut(s) 45
Fnu4HI GCNGC 3 cut(s) 177, 479, 577
FokI GGATG 1 cut(s) 73
FriOI GRGCYC 2 cut(s) 273, 609
Fsp4HI GCNGC 3 cut(s) 177, 479, 577
GlaI GCGC 3 cut(s) 193, 239, 641
GluI GCNGC 3 cut(s) 177, 479, 577
GsuI CTGGAG 1 cut(s) 638
HaeIII GGCC 1 cut(s) 452
HapII CCGG 1 cut(s) 446
HgaI GACGC 2 cut(s) 253, 443
HhaI GCGC 3 cut(s) 194, 240, 642
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 1 cut(s) 707
Hin6I GCGC 3 cut(s) 192, 238, 640
HinP1I GCGC 3 cut(s) 192, 238, 640
HincII GTYRAC 1 cut(s) 233
HindII GTYRAC 1 cut(s) 233
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 1 cut(s) 700
HpaII CCGG 1 cut(s) 446
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 3 cut(s) 163, 172, 208
Hpy188III TCNNGA 6 cut(s) 274, 336, 562, 596, 682, 697
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 520, 679
HpyCH4III ACNGT 2 cut(s) 230, 511
HpyCH4IV ACGT 3 cut(s) 278, 394, 648
HpyCH4V TGCA 3 cut(s) 466, 478, 579
HpyF10VI GCNNNNNNNGC 5 cut(s) 244, 434, 449, 582, 639
HpySE526I ACGT 3 cut(s) 278, 394, 648
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 1 cut(s) 707
HspAI GCGC 3 cut(s) 192, 238, 640
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 6 cut(s) 45, 376, 402, 556, 634, 693
LmnI GCTCC 4 cut(s) 338, 630, 657, 688
Lsp1109I GCAGC 3 cut(s) 163, 490, 563
LweI GCATC 2 cut(s) 203, 430
MaeII ACGT 3 cut(s) 278, 394, 648
MalI GATC 6 cut(s) 47, 378, 404, 558, 636, 695
MboI GATC 6 cut(s) 45, 376, 402, 556, 634, 693
MboII GAAGA 7 cut(s) 19, 107, 361, 364, 505, 535, 556
MflI RGATCY 2 cut(s) 402, 556
MhlI GDGCHC 3 cut(s) 273, 609, 654
MluCI AATT 5 cut(s) 51, 70, 209, 362, 675
MnlI CCTC 4 cut(s) 93, 157, 258, 377
MroXI GAANNNNTTC 2 cut(s) 530, 569
MslI CAYNNNNRTG 2 cut(s) 423, 471
MspA1I CMGCKG 1 cut(s) 9
MspI CCGG 1 cut(s) 446
MspR9I CCNGG 3 cut(s) 265, 446, 447
MvaI CCWGG 1 cut(s) 265
MvnI CGCG 2 cut(s) 192, 238
MwoI GCNNNNNNNGC 5 cut(s) 244, 434, 449, 582, 639
NciI CCSGG 2 cut(s) 446, 447
NdeII GATC 6 cut(s) 45, 376, 402, 556, 634, 693
NlaIII CATG 1 cut(s) 707
NlaIV GGNNCC 2 cut(s) 223, 451
NmeAIII GCCGAG 1 cut(s) 588
PasI CCCWGGG 1 cut(s) 264
PdmI GAANNNNTTC 2 cut(s) 530, 569
PfeI GAWTC 1 cut(s) 700
PkrI GCNGC 3 cut(s) 178, 480, 578
Psp124BI GAGCTC 1 cut(s) 609
Psp6I CCWGG 1 cut(s) 263
PspGI CCWGG 1 cut(s) 263
PspN4I GGNNCC 2 cut(s) 223, 451
PspPI GGNCC 2 cut(s) 221, 450
PsuI RGATCY 2 cut(s) 402, 556
PvuII CAGCTG 1 cut(s) 9
RsaI GTAC 2 cut(s) 183, 393
RsaNI GTAC 2 cut(s) 182, 392
RseI CAYNNNNRTG 2 cut(s) 423, 471
SacI GAGCTC 1 cut(s) 609
SatI GCNGC 3 cut(s) 177, 479, 577
Sau3AI GATC 6 cut(s) 45, 376, 402, 556, 634, 693
Sau96I GGNCC 2 cut(s) 221, 450
ScrFI CCNGG 3 cut(s) 265, 446, 447
SduI GDGCHC 3 cut(s) 273, 609, 654
SfaNI GCATC 2 cut(s) 203, 430
SinI GGWCC 1 cut(s) 221
SmaI CCCGGG 1 cut(s) 447
SmiMI CAYNNNNRTG 2 cut(s) 423, 471
SmlI CTYRAG 2 cut(s) 551, 560
SmoI CTYRAG 2 cut(s) 551, 560
Sse9I AATT 5 cut(s) 51, 70, 209, 362, 675
SsiI CCGC 3 cut(s) 137, 190, 236
SstI GAGCTC 1 cut(s) 609
StyD4I CCNGG 3 cut(s) 263, 444, 445
StyI CCWWGG 2 cut(s) 453, 628
TaaI ACNGT 2 cut(s) 230, 511
TaiI ACGT 3 cut(s) 281, 397, 651
TaqI TCGA 2 cut(s) 308, 375
TasI AATT 5 cut(s) 51, 70, 209, 362, 675
TfiI GAWTC 1 cut(s) 700
TseI GCWGC 3 cut(s) 176, 478, 576
TspDTI ATGAA 5 cut(s) 19, 93, 99, 108, 692
TspGWI ACGGA 2 cut(s) 10, 461
TspMI CCCGGG 1 cut(s) 445
VpaK11BI GGWCC 1 cut(s) 221
XapI RAATTY 1 cut(s) 362
XmaI CCCGGG 1 cut(s) 445
XmnI GAANNNNTTC 2 cut(s) 530, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.