Rmu_sc0000110.1_g000014

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000110.1
N/A
Physical Location & Seq
Reverse (-)
63355 .. 67872
4518 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 816 bp
atgccaaaatctaagcttataaatgggataggtaagagcttatcattaagcgactatgatcttgagccatctagaatggcgctttacagatttggtaacacatcagctgctggcttttggtatgctttgggatacatggaagccaaacaaaggcttaagaggggtgataggattctaatgagtgtggctttggaacgaggaattgaggtgactaacggcgtcgtcgcagagcatgtcgtcgcggtcggcggctttggtcacgctattgatgacggcggacacctccttctcgtcgacgcggtggatggcgccgatcgtcggagccggaacccgaggtcggtggtgcggtgggaggtacgcgaggaattggaggagcacagccaaggcggactcgacggcggcgacattgtggcggggaatccgatgccggcgctgctcatcgttttgggcggtttagggcttaggctgcaggttctctttggtcccaggtttgaacatccggcaatccttttggtcgagtttaggtcacaacgagtgttggcttggtcgatcaaaagcttgtcaggaggactctgtaacctgaacaaattggactttgctccattgggaacaactggctctagatatcataggtgggttcgtgatatccaccagcatctcaaggctaatggaatcctggatatgattctcgagcctagccaggacgtgctaactgttgagcaagctcaggctttggaagcaaatagagcagccttagaggcaaataaggctaaagccatcatcctaatgactcgtcatatggatgattcgctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

271

Amino Acids

29.72

Weight (kDa)

6.76

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 20
Acc36I ACCTGC 1 cut(s) 460
AccB1I GGYRCC 1 cut(s) 308
AccI GTMKAC 1 cut(s) 294
AccII CGCG 3 cut(s) 242, 299, 360
AciI CCGC 9 cut(s) 242, 249, 276, 299, 346, 387, 399, 413, 450
AcyI GRCGYC 2 cut(s) 219, 309
AfaI GTAC 1 cut(s) 357
AfiI CCNNNNNNNGG 3 cut(s) 150, 318, 337
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 1 cut(s) 494
AjiI CACGTC 1 cut(s) 706
AjnI CCWGG 3 cut(s) 485, 675, 699
AluBI AGCT 5 cut(s) 16, 39, 107, 558, 725
AluI AGCT 5 cut(s) 16, 39, 107, 558, 725
Alw21I GWGCWC 1 cut(s) 378
AlwNI CAGNNNCTG 1 cut(s) 110
Ama87I CYCGRG 2 cut(s) 331, 689
ApeKI GCWGC 4 cut(s) 107, 433, 466, 749
AspLEI GCGC 3 cut(s) 82, 311, 433
AspS9I GGNCC 1 cut(s) 482
AsuHPI GGTGA 2 cut(s) 176, 220
AvaI CYCGRG 2 cut(s) 331, 689
AvaII GGWCC 1 cut(s) 482
BanI GGYRCC 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 4 cut(s) 94, 420, 453, 761
BccI CCATC 3 cut(s) 76, 299, 785
BceAI ACGGC 3 cut(s) 232, 289, 412
BciT130I CCWGG 3 cut(s) 487, 677, 701
BciVI GTATCC 1 cut(s) 125
BfaI CTAG 4 cut(s) 72, 621, 696, 814
BfmI CTRYAG 1 cut(s) 467
BfoI RGCGCY 3 cut(s) 83, 312, 434
BfrI CTTAAG 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 460
BfuI GTATCC 1 cut(s) 125
BglI GCCNNNNNGGC 1 cut(s) 758
BisI GCNGC 6 cut(s) 108, 250, 400, 434, 467, 750
BlsI GCNGC 6 cut(s) 109, 251, 401, 435, 468, 751
Bme1390I CCNGG 3 cut(s) 487, 677, 701
Bme18I GGWCC 1 cut(s) 482
BmeT110I CYCGRG 2 cut(s) 331, 689
BmgBI CACGTC 1 cut(s) 706
BmgT120I GGNCC 1 cut(s) 482
BmiI GGNNCC 4 cut(s) 310, 323, 329, 484
BmrFI CCNGG 3 cut(s) 487, 677, 701
BmsI GCATC 2 cut(s) 414, 664
Bpu10I CCTNAGC 2 cut(s) 461, 726
BpuEI CTTGAG 2 cut(s) 83, 644
BsaHI GRCGYC 2 cut(s) 219, 309
BsaJI CCNNGG 3 cut(s) 332, 382, 485
Bsc4I CCNNNNNNNGG 3 cut(s) 150, 318, 337
Bse118I RCCGGY 1 cut(s) 427
Bse1I ACTGG 1 cut(s) 619
BseBI CCWGG 3 cut(s) 487, 677, 701
BseDI CCNNGG 3 cut(s) 332, 382, 485
BseGI GGATG 4 cut(s) 310, 496, 780, 808
BseLI CCNNNNNNNGG 3 cut(s) 150, 318, 337
BseMII CTCAG 1 cut(s) 740
BseNI ACTGG 1 cut(s) 619
BseRI GAGGAG 1 cut(s) 386
BseXI GCAGC 4 cut(s) 94, 420, 453, 761
Bsh1236I CGCG 3 cut(s) 242, 299, 360
Bsh1285I CGRYCG 2 cut(s) 246, 316
BshNI GGYRCC 1 cut(s) 308
BsiEI CGRYCG 2 cut(s) 246, 316
BsiHKAI GWGCWC 1 cut(s) 378
BsiHKCI CYCGRG 2 cut(s) 331, 689
BsiSI CCGG 3 cut(s) 325, 428, 500
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 3 cut(s) 150, 318, 337
BsmFI GGGAC 1 cut(s) 468
BsoBI CYCGRG 2 cut(s) 331, 689
Bsp1286I GDGCHC 1 cut(s) 378
Bsp143I GATC 3 cut(s) 58, 313, 549
BspACI CCGC 9 cut(s) 242, 249, 276, 299, 346, 387, 399, 413, 450
BspCNI CTCAG 1 cut(s) 739
BspFNI CGCG 3 cut(s) 242, 299, 360
BspLI GGNNCC 4 cut(s) 310, 323, 329, 484
BspMAI CTGCAG 1 cut(s) 471
BspMI ACCTGC 1 cut(s) 460
BspT107I GGYRCC 1 cut(s) 308
BspTI CTTAAG 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 427
BsrI ACTGG 1 cut(s) 619
BssAI RCCGGY 1 cut(s) 427
BssECI CCNNGG 3 cut(s) 332, 382, 485
BssMI GATC 3 cut(s) 58, 313, 549
BssNI GRCGYC 2 cut(s) 219, 309
BssT1I CCWWGG 1 cut(s) 382
Bst2UI CCWGG 3 cut(s) 487, 677, 701
Bst4CI ACNGT 1 cut(s) 715
BstACI GRCGYC 2 cut(s) 219, 309
BstAFI CTTAAG 1 cut(s) 155
BstC8I GCNNGC 3 cut(s) 112, 429, 723
BstDEI CTNAG 4 cut(s) 12, 461, 726, 754
BstF5I GGATG 4 cut(s) 310, 496, 780, 808
BstFNI CGCG 3 cut(s) 242, 299, 360
BstH2I RGCGCY 3 cut(s) 83, 312, 434
BstHHI GCGC 3 cut(s) 82, 311, 433
BstKTI GATC 3 cut(s) 61, 316, 552
BstMBI GATC 3 cut(s) 58, 313, 549
BstMCI CGRYCG 2 cut(s) 246, 316
BstMWI GCNNNNNNNGC 6 cut(s) 433, 466, 737, 746, 758, 767
BstNI CCWGG 3 cut(s) 487, 677, 701
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 3 cut(s) 485, 675, 699
BstSFI CTRYAG 1 cut(s) 467
BstUI CGCG 3 cut(s) 242, 299, 360
BstV1I GCAGC 4 cut(s) 94, 420, 453, 761
BsuI GTATCC 1 cut(s) 125
BtrI CACGTC 1 cut(s) 706
BtsCI GGATG 4 cut(s) 310, 496, 780, 808
BveI ACCTGC 1 cut(s) 460
Cac8I GCNNGC 3 cut(s) 112, 429, 723
CaiI CAGNNNCTG 1 cut(s) 110
CfoI GCGC 3 cut(s) 82, 311, 433
Cfr10I RCCGGY 1 cut(s) 427
Cfr13I GGNCC 1 cut(s) 482
CseI GACGC 2 cut(s) 208, 305
Csp6I GTAC 1 cut(s) 356
CviAII CATG 2 cut(s) 136, 233
CviQI GTAC 1 cut(s) 356
DdeI CTNAG 4 cut(s) 12, 461, 726, 754
DinI GGCGCC 1 cut(s) 310
DpnI GATC 3 cut(s) 60, 315, 551
DpnII GATC 3 cut(s) 58, 313, 549
EciI GGCGGA 2 cut(s) 291, 402
Eco130I CCWWGG 1 cut(s) 382
Eco32I GATATC 2 cut(s) 626, 646
Eco47I GGWCC 1 cut(s) 482
Eco88I CYCGRG 2 cut(s) 331, 689
EcoRII CCWGG 3 cut(s) 485, 675, 699
EcoRV GATATC 2 cut(s) 626, 646
EcoT14I CCWWGG 1 cut(s) 382
EgeI GGCGCC 1 cut(s) 310
EheI GGCGCC 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 382
FaeI CATG 2 cut(s) 139, 236
FaiI YATR 9 cut(s) 20, 57, 123, 137, 234, 630, 683, 798, 800
FaqI GGGAC 1 cut(s) 468
FatI CATG 2 cut(s) 135, 232
FauI CCCGC 1 cut(s) 406
FauNDI CATATG 1 cut(s) 798
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 6 cut(s) 108, 250, 400, 434, 467, 750
FokI GGATG 3 cut(s) 317, 483, 767
Fsp4HI GCNGC 6 cut(s) 108, 250, 400, 434, 467, 750
FspBI CTAG 4 cut(s) 72, 621, 696, 814
GlaI GCGC 3 cut(s) 81, 310, 432
GluI GCNGC 6 cut(s) 108, 250, 400, 434, 467, 750
HaeII RGCGCY 3 cut(s) 83, 312, 434
HapII CCGG 3 cut(s) 325, 428, 500
HgaI GACGC 2 cut(s) 208, 305
HhaI GCGC 3 cut(s) 82, 311, 433
Hin1I GRCGYC 2 cut(s) 219, 309
Hin1II CATG 2 cut(s) 139, 236
Hin6I GCGC 3 cut(s) 80, 309, 431
HinP1I GCGC 3 cut(s) 80, 309, 431
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HindIII AAGCTT 2 cut(s) 14, 556
HinfI GANTC 8 cut(s) 172, 390, 418, 570, 672, 685, 790, 806
HpaII CCGG 3 cut(s) 325, 428, 500
HphI GGTGA 2 cut(s) 176, 220
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 2 cut(s) 321, 423
Hpy188III TCNNGA 6 cut(s) 62, 72, 564, 621, 641, 689
Hpy8I GTNNAC 1 cut(s) 295
Hpy99I CGWCG 7 cut(s) 224, 227, 242, 296, 299, 321, 398
HpyAV CCTTC 1 cut(s) 296
HpyCH4III ACNGT 1 cut(s) 715
HpyCH4IV ACGT 1 cut(s) 705
HpyCH4V TGCA 1 cut(s) 469
HpyF10VI GCNNNNNNNGC 6 cut(s) 433, 466, 737, 746, 758, 767
HpyF3I CTNAG 4 cut(s) 12, 461, 726, 754
HpySE526I ACGT 1 cut(s) 705
Hsp92I GRCGYC 2 cut(s) 219, 309
Hsp92II CATG 2 cut(s) 139, 236
HspAI GCGC 3 cut(s) 80, 309, 431
KasI GGCGCC 1 cut(s) 308
KroI GCCGGC 1 cut(s) 427
KroNI GCCGGC 1 cut(s) 429
Kzo9I GATC 3 cut(s) 58, 313, 549
LmnI GCTCC 3 cut(s) 321, 373, 604
Lsp1109I GCAGC 4 cut(s) 94, 420, 453, 761
LweI GCATC 2 cut(s) 414, 664
MaeI CTAG 4 cut(s) 72, 621, 696, 814
MaeII ACGT 1 cut(s) 705
MaeIII GTNAC 5 cut(s) 95, 208, 257, 525, 575
MalI GATC 3 cut(s) 60, 315, 551
MboI GATC 3 cut(s) 58, 313, 549
MhlI GDGCHC 1 cut(s) 378
MluCI AATT 3 cut(s) 201, 365, 587
Mly113I GGCGCC 1 cut(s) 309
MlyI GAGTC 3 cut(s) 384, 564, 784
MmeI TCCRAC 1 cut(s) 299
MroNI GCCGGC 1 cut(s) 427
MseI TTAA 2 cut(s) 47, 156
MslI CAYNNNNRTG 2 cut(s) 785, 801
MspA1I CMGCKG 1 cut(s) 107
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 3 cut(s) 325, 428, 500
MspR9I CCNGG 3 cut(s) 487, 677, 701
MvaI CCWGG 3 cut(s) 487, 677, 701
MvnI CGCG 3 cut(s) 242, 299, 360
MwoI GCNNNNNNNGC 6 cut(s) 433, 466, 737, 746, 758, 767
NaeI GCCGGC 1 cut(s) 429
NarI GGCGCC 1 cut(s) 309
NdeI CATATG 1 cut(s) 798
NdeII GATC 3 cut(s) 58, 313, 549
NgoMIV GCCGGC 1 cut(s) 427
NlaIII CATG 2 cut(s) 139, 236
NlaIV GGNNCC 4 cut(s) 310, 323, 329, 484
NmuCI GTSAC 3 cut(s) 208, 257, 525
NspI RCATGY 1 cut(s) 236
PaeR7I CTCGAG 1 cut(s) 689
PcsI WCGNNNNNNNCGW 1 cut(s) 399
PdiI GCCGGC 1 cut(s) 429
PfeI GAWTC 5 cut(s) 172, 418, 672, 685, 806
PfoI TCCNGGA 1 cut(s) 675
PkrI GCNGC 6 cut(s) 109, 251, 401, 435, 468, 751
Ple19I CGATCG 1 cut(s) 316
PleI GAGTC 3 cut(s) 384, 564, 784
PluTI GGCGCC 1 cut(s) 312
PpsI GAGTC 3 cut(s) 384, 564, 784
PsiI TTATAA 1 cut(s) 20
Psp6I CCWGG 3 cut(s) 485, 675, 699
PspGI CCWGG 3 cut(s) 485, 675, 699
PspN4I GGNNCC 4 cut(s) 310, 323, 329, 484
PspPI GGNCC 1 cut(s) 482
PstI CTGCAG 1 cut(s) 471
PstNI CAGNNNCTG 1 cut(s) 110
PvuI CGATCG 1 cut(s) 316
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
RseI CAYNNNNRTG 2 cut(s) 785, 801
SalI GTCGAC 1 cut(s) 293
SaqAI TTAA 2 cut(s) 47, 156
SatI GCNGC 6 cut(s) 108, 250, 400, 434, 467, 750
Sau3AI GATC 3 cut(s) 58, 313, 549
Sau96I GGNCC 1 cut(s) 482
SchI GAGTC 3 cut(s) 384, 564, 784
ScrFI CCNGG 3 cut(s) 487, 677, 701
SduI GDGCHC 1 cut(s) 378
SfaNI GCATC 2 cut(s) 414, 664
SfcI CTRYAG 1 cut(s) 467
SfoI GGCGCC 1 cut(s) 310
Sfr274I CTCGAG 1 cut(s) 689
SgrDI CGTCGACG 1 cut(s) 293
SinI GGWCC 1 cut(s) 482
SlaI CTCGAG 1 cut(s) 689
SmiMI CAYNNNNRTG 2 cut(s) 785, 801
SmlI CTYRAG 4 cut(s) 62, 155, 659, 689
SmoI CTYRAG 4 cut(s) 62, 155, 659, 689
Sse9I AATT 3 cut(s) 201, 365, 587
SsiI CCGC 9 cut(s) 242, 249, 276, 299, 346, 387, 399, 413, 450
SspDI GGCGCC 1 cut(s) 308
SspMI CTAG 4 cut(s) 72, 621, 696, 814
StyD4I CCNGG 3 cut(s) 485, 675, 699
StyI CCWWGG 1 cut(s) 382
TaaI ACNGT 1 cut(s) 715
TaiI ACGT 1 cut(s) 708
TaqI TCGA 5 cut(s) 294, 393, 516, 548, 690
TasI AATT 3 cut(s) 201, 365, 587
TauI GCSGC 2 cut(s) 252, 402
TfiI GAWTC 5 cut(s) 172, 418, 672, 685, 806
Tru1I TTAA 2 cut(s) 47, 156
Tru9I TTAA 2 cut(s) 47, 156
TseFI GTSAC 3 cut(s) 208, 257, 525
TseI GCWGC 4 cut(s) 107, 433, 466, 749
Tsp45I GTSAC 3 cut(s) 208, 257, 525
Vha464I CTTAAG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 482
XbaI TCTAGA 2 cut(s) 71, 620
XceI RCATGY 1 cut(s) 236
XhoI CTCGAG 1 cut(s) 689
XmiI GTMKAC 1 cut(s) 294
XspI CTAG 4 cut(s) 72, 621, 696, 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.