Rmu_sc0000114.1_g000010

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000114.1
N/A
Physical Location & Seq
Reverse (-)
46051 .. 47485
1435 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 585 bp
atgcagaaggcaatccaagagcaaggaagaggccaagtcctagacactataaacgagatccaagagaggcacaatggtgtaaaagccatggagaggaatctgaacgagttgcaccaggtgtttctggacatggcagtcctggttcaagctcagggtgagcagatcgacgacatcgagcgtcacgtagatcgagctagttcgttcgtgcaacaaggcacccagcagttgcagaaggccagattcttgcagaaaaacacacgcaaatggacctgttatgcacgagccctaaccctgaaaccctatattcgtagccttcaaatcccagaaacctccgccgctcaccttcaagatctcaactccaggagtccagaaccggcggccccacccccagaaccggccggcaaaccaccgaaccggccatcggaagtagcaaaagtccctttgcccggttcaaagccttcctcaccacctcctgcagccatactcgaccacctgcaacgtctccaccccagaaaccaggaaccggaaatttcatcaccagaaccggccaaaattccacagaaccggcccccggaatccccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006833 GO:0006886 GO:0006887 GO:0006906 GO:0006950 GO:0006952 GO:0006996 GO:0008104 GO:0008150 GO:0009504 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010148 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0031347 GO:0031348 GO:0031984 GO:0032507 GO:0032940 GO:0032991 GO:0033036 GO:0033993 GO:0034613 GO:0042044 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045185 GO:0046903 GO:0046907 GO:0048278 GO:0048284 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051640 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051707 GO:0055044 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080134 GO:0090150 GO:0090174 GO:0097305 GO:0098542 GO:0098791 GO:0098796 GO:0140056 GO:1901700 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04130 ko04721 map04130 map04721
Pfam Domains
Protein Families
SNARE Syntaxin

Protein Analysis

194

Amino Acids

21.7

Weight (kDa)

8.76

Isoelectric Point (pI)

73.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNARE PF05739 53 - 93 1.4e-14 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 501
AasI GACNNNNNNGTC 1 cut(s) 134
Acc36I ACCTGC 1 cut(s) 501
AccB1I GGYRCC 1 cut(s) 215
AccBSI CCGCTC 1 cut(s) 338
AciI CCGC 3 cut(s) 333, 336, 377
AclWI GGATC 1 cut(s) 52
AcoI YGGCCR 3 cut(s) 396, 416, 546
AcsI RAATTY 2 cut(s) 528, 552
AdeI CACNNNGTG 1 cut(s) 118
AfiI CCNNNNNNNGG 6 cut(s) 93, 394, 421, 446, 523, 571
AgsI TTSAA 4 cut(s) 146, 317, 347, 453
AjnI CCWGG 4 cut(s) 114, 138, 359, 516
AleI CACNNNNGTG 1 cut(s) 75
AluBI AGCT 2 cut(s) 149, 194
AluI AGCT 2 cut(s) 149, 194
Alw26I GTCTC 1 cut(s) 506
AlwI GGATC 1 cut(s) 52
AoxI GGCC 7 cut(s) 31, 234, 378, 396, 416, 546, 566
ApeKI GCWGC 1 cut(s) 476
ApoI RAATTY 2 cut(s) 528, 552
AspS9I GGNCC 3 cut(s) 267, 379, 567
AsuC2I CCSGG 2 cut(s) 447, 572
AsuHPI GGTGA 4 cut(s) 167, 332, 456, 528
AvaII GGWCC 1 cut(s) 267
BanI GGYRCC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 286
BauI CACGAG 1 cut(s) 279
BbvI GCAGC 1 cut(s) 488
BccI CCATC 1 cut(s) 427
BciT130I CCWGG 4 cut(s) 116, 140, 361, 518
BcnI CCSGG 2 cut(s) 447, 572
BcoDI GTCTC 1 cut(s) 506
BfaI CTAG 2 cut(s) 41, 195
BfmI CTRYAG 1 cut(s) 474
BfuAI ACCTGC 1 cut(s) 501
BglII AGATCT 1 cut(s) 349
BisI GCNGC 3 cut(s) 336, 378, 477
BlsI GCNGC 3 cut(s) 337, 379, 478
Bme1390I CCNGG 6 cut(s) 116, 140, 361, 447, 518, 572
Bme18I GGWCC 1 cut(s) 267
BmgT120I GGNCC 3 cut(s) 267, 379, 567
BmiI GGNNCC 4 cut(s) 217, 381, 522, 569
BmrFI CCNGG 6 cut(s) 116, 140, 361, 447, 518, 572
BpmI CTGGAG 1 cut(s) 343
Bpu10I CCTNAGC 1 cut(s) 150
BpuMI CCSGG 2 cut(s) 447, 572
BsaAI YACGTR 1 cut(s) 184
BsaJI CCNNGG 2 cut(s) 87, 570
BsaWI WCCGGW 1 cut(s) 523
Bsc4I CCNNNNNNNGG 6 cut(s) 93, 394, 421, 446, 523, 571
Bse118I RCCGGY 6 cut(s) 373, 394, 398, 414, 544, 564
BseBI CCWGG 4 cut(s) 116, 140, 361, 518
BseDI CCNNGG 2 cut(s) 87, 570
BseLI CCNNNNNNNGG 6 cut(s) 93, 394, 421, 446, 523, 571
BseMII CTCAG 1 cut(s) 164
BseX3I CGGCCG 1 cut(s) 396
BseXI GCAGC 1 cut(s) 488
BseYI CCCAGC 1 cut(s) 219
Bsh1285I CGRYCG 1 cut(s) 399
BshFI GGCC 7 cut(s) 33, 236, 380, 398, 418, 548, 568
BshNI GGYRCC 1 cut(s) 215
BsiEI CGRYCG 1 cut(s) 399
BsiSI CCGG 9 cut(s) 374, 395, 399, 415, 447, 524, 545, 565, 572
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 6 cut(s) 93, 394, 421, 446, 523, 571
BsmAI GTCTC 1 cut(s) 506
BsmBI CGTCTC 1 cut(s) 506
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 7 cut(s) 33, 236, 380, 398, 418, 548, 568
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 4 cut(s) 57, 162, 187, 349
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 3 cut(s) 333, 336, 377
BspANI GGCC 7 cut(s) 33, 236, 380, 398, 418, 548, 568
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 4 cut(s) 217, 381, 522, 569
BspMAI CTGCAG 1 cut(s) 478
BspMI ACCTGC 1 cut(s) 501
BspPI GGATC 1 cut(s) 52
BspT107I GGYRCC 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 338
BsrFI RCCGGY 6 cut(s) 373, 394, 398, 414, 544, 564
BssAI RCCGGY 6 cut(s) 373, 394, 398, 414, 544, 564
BssECI CCNNGG 2 cut(s) 87, 570
BssMI GATC 4 cut(s) 57, 162, 187, 349
BssSI CACGAG 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 279
Bst2UI CCWGG 4 cut(s) 116, 140, 361, 518
Bst6I CTCTTC 1 cut(s) 22
BstBAI YACGTR 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 400
BstDEI CTNAG 1 cut(s) 150
BstDSI CCRYGG 1 cut(s) 87
BstKTI GATC 4 cut(s) 60, 165, 190, 352
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 4 cut(s) 57, 162, 187, 349
BstMCI CGRYCG 1 cut(s) 399
BstNI CCWGG 4 cut(s) 116, 140, 361, 518
BstSCI CCNGG 6 cut(s) 114, 138, 359, 445, 516, 570
BstSFI CTRYAG 1 cut(s) 474
BstV1I GCAGC 1 cut(s) 488
BstX2I RGATCY 2 cut(s) 57, 349
BstYI RGATCY 2 cut(s) 57, 349
BstZI CGGCCG 1 cut(s) 396
BsuRI GGCC 7 cut(s) 33, 236, 380, 398, 418, 548, 568
BtgI CCRYGG 1 cut(s) 87
BveI ACCTGC 1 cut(s) 501
Cac8I GCNNGC 1 cut(s) 400
Cfr10I RCCGGY 6 cut(s) 373, 394, 398, 414, 544, 564
Cfr13I GGNCC 3 cut(s) 267, 379, 567
CseI GACGC 1 cut(s) 167
CsiI ACCWGGT 1 cut(s) 114
CviAII CATG 2 cut(s) 88, 130
DdeI CTNAG 1 cut(s) 150
DpnI GATC 4 cut(s) 59, 164, 189, 351
DpnII GATC 4 cut(s) 57, 162, 187, 349
DraIII CACNNNGTG 1 cut(s) 118
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
EaeI YGGCCR 3 cut(s) 396, 416, 546
EagI CGGCCG 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
EciI GGCGGA 1 cut(s) 322
EclXI CGGCCG 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 267
Eco52I CGGCCG 1 cut(s) 396
EcoRII CCWGG 4 cut(s) 114, 138, 359, 516
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 506
FaeI CATG 2 cut(s) 91, 133
FaiI YATR 6 cut(s) 50, 89, 131, 276, 303, 482
FaqI GGGAC 1 cut(s) 422
FatI CATG 2 cut(s) 87, 129
Fnu4HI GCNGC 3 cut(s) 336, 378, 477
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 3 cut(s) 336, 378, 477
FspBI CTAG 2 cut(s) 41, 195
GluI GCNGC 3 cut(s) 336, 378, 477
GsaI CCCAGC 1 cut(s) 223
GsuI CTGGAG 1 cut(s) 343
HaeIII GGCC 7 cut(s) 33, 236, 380, 398, 418, 548, 568
HapII CCGG 9 cut(s) 374, 395, 399, 415, 447, 524, 545, 565, 572
HgaI GACGC 1 cut(s) 167
Hin1II CATG 2 cut(s) 91, 133
HinfI GANTC 4 cut(s) 97, 240, 364, 575
HpaII CCGG 9 cut(s) 374, 395, 399, 415, 447, 524, 545, 565, 572
HphI GGTGA 4 cut(s) 167, 332, 456, 528
Hpy188I TCNGA 2 cut(s) 102, 424
Hpy188III TCNNGA 3 cut(s) 125, 347, 368
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 4 cut(s) 226, 323, 353, 468
HpyCH4IV ACGT 2 cut(s) 183, 499
HpyCH4V TGCA 8 cut(s) 4, 112, 208, 229, 247, 278, 476, 496
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 2 cut(s) 183, 499
Hsp92II CATG 2 cut(s) 91, 133
KroI GCCGGC 1 cut(s) 398
KroNI GCCGGC 1 cut(s) 400
Kzo9I GATC 4 cut(s) 57, 162, 187, 349
Lsp1109I GCAGC 1 cut(s) 488
MabI ACCWGGT 1 cut(s) 114
MaeI CTAG 2 cut(s) 41, 195
MaeII ACGT 2 cut(s) 183, 499
MaeIII GTNAC 1 cut(s) 179
MalI GATC 4 cut(s) 59, 164, 189, 351
MbiI CCGCTC 1 cut(s) 338
MboI GATC 4 cut(s) 57, 162, 187, 349
MboII GAAGA 1 cut(s) 39
MflI RGATCY 2 cut(s) 57, 349
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 2 cut(s) 528, 552
MlyI GAGTC 1 cut(s) 373
MnlI CCTC 6 cut(s) 23, 60, 87, 340, 472, 480
MroNI GCCGGC 1 cut(s) 398
MslI CAYNNNNRTG 2 cut(s) 75, 262
MspI CCGG 9 cut(s) 374, 395, 399, 415, 447, 524, 545, 565, 572
MspR9I CCNGG 6 cut(s) 116, 140, 361, 447, 518, 572
MvaI CCWGG 4 cut(s) 116, 140, 361, 518
NaeI GCCGGC 1 cut(s) 400
NciI CCSGG 2 cut(s) 447, 572
NcoI CCATGG 1 cut(s) 87
NdeII GATC 4 cut(s) 57, 162, 187, 349
NgoMIV GCCGGC 1 cut(s) 398
NlaIII CATG 2 cut(s) 91, 133
NlaIV GGNNCC 4 cut(s) 217, 381, 522, 569
NmuCI GTSAC 1 cut(s) 179
OliI CACNNNNGTG 1 cut(s) 75
PaqCI CACCTGC 1 cut(s) 501
PcsI WCGNNNNNNNCGW 2 cut(s) 171, 180
PdiI GCCGGC 1 cut(s) 400
PfeI GAWTC 3 cut(s) 97, 240, 575
PfoI TCCNGGA 1 cut(s) 359
PkrI GCNGC 3 cut(s) 337, 379, 478
PleI GAGTC 1 cut(s) 372
PpsI GAGTC 1 cut(s) 372
Ppu21I YACGTR 1 cut(s) 184
Psp6I CCWGG 4 cut(s) 114, 138, 359, 516
PspFI CCCAGC 1 cut(s) 219
PspGI CCWGG 4 cut(s) 114, 138, 359, 516
PspN4I GGNNCC 4 cut(s) 217, 381, 522, 569
PspPI GGNCC 3 cut(s) 267, 379, 567
PstI CTGCAG 1 cut(s) 478
PsuI RGATCY 2 cut(s) 57, 349
RseI CAYNNNNRTG 2 cut(s) 75, 262
SatI GCNGC 3 cut(s) 336, 378, 477
Sau3AI GATC 4 cut(s) 57, 162, 187, 349
Sau96I GGNCC 3 cut(s) 267, 379, 567
SchI GAGTC 1 cut(s) 373
ScrFI CCNGG 6 cut(s) 116, 140, 361, 447, 518, 572
SduI GDGCHC 1 cut(s) 286
SexAI ACCWGGT 1 cut(s) 114
SfcI CTRYAG 1 cut(s) 474
SinI GGWCC 1 cut(s) 267
SmiMI CAYNNNNRTG 2 cut(s) 75, 262
Sse9I AATT 2 cut(s) 528, 552
SsiI CCGC 3 cut(s) 333, 336, 377
SspMI CTAG 2 cut(s) 41, 195
StyD4I CCNGG 6 cut(s) 114, 138, 359, 445, 516, 570
StyI CCWWGG 1 cut(s) 87
TaiI ACGT 2 cut(s) 186, 502
TaqI TCGA 4 cut(s) 165, 174, 190, 486
TasI AATT 2 cut(s) 528, 552
TauI GCSGC 2 cut(s) 338, 380
TfiI GAWTC 3 cut(s) 97, 240, 575
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 1 cut(s) 476
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 522
VpaK11BI GGWCC 1 cut(s) 267
XapI RAATTY 2 cut(s) 528, 552
XspI CTAG 2 cut(s) 41, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.