Rmu_sc0000129.1_g000003

GDT1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000129.1
OG0031042
Physical Location & Seq
Forward (+)
13959 .. 15697
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
atgatattggctagggctgggatttggaaccgtaaaatcgaaggaaccgcaccgaaagtctcggagagcgaacacagctgcaaccagcaacccgtctccgccagtccgcctctccggtctccgagctccgccttcaggctccaggtagaagagaaacttgagtctggacaggggaagacaactttccgccgtttcttttctagattttgtacaccaatctttttggagtcattcgttctaacatttttagctgagtggggagatcgtagccaaatagcgacaatcgctgtaagatgcgcccttttcatagttcactttactgctgctttatataatcgttttagggatggagaaatctcattagcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0016

Protein Analysis

122

Amino Acids

13.74

Weight (kDa)

9.35

Isoelectric Point (pI)

62.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDT1 PF01169 75 - 96 1.6e-06 Divalent cation/proton antiporter GDT1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031042)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000129.1_g000003 Rmu_sc0003005.1_g000013

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 48, 99, 107, 129, 187
AcuI CTGAAG 1 cut(s) 118
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 135
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 3 cut(s) 78, 126, 251
AluI AGCT 3 cut(s) 78, 126, 251
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 3 cut(s) 64, 100, 123
ApeKI GCWGC 2 cut(s) 78, 323
AspLEI GCGC 1 cut(s) 299
BanII GRGCYC 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 2 cut(s) 65, 310
BccI CCATC 1 cut(s) 341
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 143
BcoDI GTCTC 3 cut(s) 64, 100, 123
BfaI CTAG 2 cut(s) 12, 201
BisI GCNGC 2 cut(s) 79, 324
BlsI GCNGC 2 cut(s) 80, 325
Bme1390I CCNGG 1 cut(s) 143
BmiI GGNNCC 3 cut(s) 29, 46, 140
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 284
BpiI GAAGAC 1 cut(s) 182
BpmI CTGGAG 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 179
BsaI GGTCTC 1 cut(s) 123
BsaWI WCCGGW 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 102
BseXI GCAGC 2 cut(s) 65, 310
BseYI CCCAGC 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 128
BsiSI CCGG 1 cut(s) 115
BslI CCNNNNNNNGG 1 cut(s) 135
BsmAI GTCTC 3 cut(s) 64, 100, 123
BsmBI CGTCTC 1 cut(s) 100
Bso31I GGTCTC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 128
Bsp1407I TGTACA 1 cut(s) 209
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 5 cut(s) 48, 99, 107, 129, 187
BspCNI CTCAG 1 cut(s) 244
BspLI GGNNCC 3 cut(s) 29, 46, 140
BspTNI GGTCTC 1 cut(s) 123
BsrGI TGTACA 1 cut(s) 209
BsrI ACTGG 1 cut(s) 102
BssMI GATC 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 144
BstAUI TGTACA 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 352
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 3 cut(s) 64, 100, 123
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 2 cut(s) 75, 284
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 65, 310
BstV2I GAAGAC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 352
CfoI GCGC 1 cut(s) 299
Csp6I GTAC 1 cut(s) 210
CviJI RGCY 7 cut(s) 11, 17, 78, 126, 139, 251, 270
CviKI_1 RGCY 7 cut(s) 11, 17, 78, 126, 139, 251, 270
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 1 cut(s) 252
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
EciI GGCGGA 4 cut(s) 88, 96, 118, 176
Ecl136II GAGCTC 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 128
Eco31I GGTCTC 1 cut(s) 123
Eco53kI GAGCTC 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 128
Esp3I CGTCTC 1 cut(s) 100
FaiI YATR 4 cut(s) 308, 331, 333, 367
FalI AAGNNNNNCTT 2 cut(s) 141, 173
Fnu4HI GCNGC 2 cut(s) 79, 324
FokI GGATG 1 cut(s) 359
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 79, 324
FspBI CTAG 2 cut(s) 12, 201
GlaI GCGC 1 cut(s) 298
GluI GCNGC 2 cut(s) 79, 324
GsaI CCCAGC 1 cut(s) 21
GsuI CTGGAG 1 cut(s) 125
HapII CCGG 1 cut(s) 115
HhaI GCGC 1 cut(s) 299
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HinfI GANTC 2 cut(s) 161, 227
HpaII CCGG 1 cut(s) 115
Hpy166II GTNNAC 2 cut(s) 212, 313
Hpy188I TCNGA 2 cut(s) 64, 123
Hpy188III TCNNGA 2 cut(s) 165, 201
Hpy8I GTNNAC 2 cut(s) 212, 313
HpyAV CCTTC 2 cut(s) 35, 142
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 284
HpyF3I CTNAG 1 cut(s) 252
HspAI GCGC 1 cut(s) 297
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 2 cut(s) 131, 144
LpnPI CCDG 9 cut(s) 3, 98, 115, 121, 128, 128, 150, 155, 155
Lsp1109I GCAGC 2 cut(s) 65, 310
LweI GCATC 1 cut(s) 284
MaeI CTAG 2 cut(s) 12, 201
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 2 cut(s) 161, 187
MhlI GDGCHC 1 cut(s) 128
MlyI GAGTC 2 cut(s) 170, 236
MnlI CCTC 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 2 cut(s) 75, 284
NdeII GATC 1 cut(s) 262
NlaIV GGNNCC 3 cut(s) 29, 46, 140
PkrI GCNGC 2 cut(s) 80, 325
PleI GAGTC 2 cut(s) 169, 235
PpsI GAGTC 2 cut(s) 169, 235
Psp124BI GAGCTC 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 141
PspFI CCCAGC 1 cut(s) 17
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 3 cut(s) 29, 46, 140
PvuII CAGCTG 1 cut(s) 78
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SacI GAGCTC 1 cut(s) 128
SatI GCNGC 2 cut(s) 79, 324
Sau3AI GATC 1 cut(s) 262
SchI GAGTC 2 cut(s) 170, 236
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 1 cut(s) 128
SetI ASST 4 cut(s) 80, 128, 147, 253
SfaNI GCATC 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
SsiI CCGC 5 cut(s) 48, 99, 107, 129, 187
SspMI CTAG 2 cut(s) 12, 201
SstI GAGCTC 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 1 cut(s) 39
TatI WGTACW 1 cut(s) 209
TseI GCWGC 2 cut(s) 78, 323
TspDTI ATGAA 1 cut(s) 295
XbaI TCTAGA 1 cut(s) 200
XspI CTAG 2 cut(s) 12, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.