Rmu_sc0000144.1_g000028

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000144.1
N/A
Physical Location & Seq
Forward (+)
95923 .. 98452
2530 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 903 bp
atgtcgtccgagaagaagatcataaccctaaagagctccgacaacgagaccttcgaggtcgatgaggcggtggccctggaatcgcagaccatcaagcacatggtggaggacggctgcgccgacaatgcgatccccttgcccaacgtcaccggcgccatcctagccaagaccatcaagcacatggtggaggacggctgcgccgacaatgcgatccccttgcccaacgtcaccggtgccatcctagccaaggtgatcgagtactgcaagaagcacgttgaggagggcggcaaagataccgagaaggacaaggccggcgactcgccgttgaaggagttcgactccgatttcatcaaggtcgaccagaacgtcctgttcgacctcatcttggctgccaactatctgaacatcaagggccttctggatctgacttgccagactgtggcagacatgattaaggggaagactcctgaagagatccgcaagactttcaacattaagaatgacttcactcctgaagaagaggaggagaagctagctagctgcaaggcatctttgcttttcacgccacacttcctcctccattttccacttctcggcaactcccactcctttgtctccgctcctaatcctttatcttctctggtgctccccaacatccataccatatctagcgttgaggatgttacgacgtgccttgctgctacagtgctatccacggttatggcggcctctaagagccagagttggaagcacactagcaaagcctacctaccactacctggtaggccaccagagccctttgattcggccatcatcgctctccatcatttcatgtcccagattggttataattggccggtgccggagccgaacttggtggtttgcgagtggcctaatggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

300

Amino Acids

32.82

Weight (kDa)

5.07

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 6 - 58 7.3e-21 Skp1 family, tetramerisation domain
Skp1_POZ PF03931 56 - 92 6.1e-16 Skp1 family, tetramerisation domain
Skp1 PF01466 137 - 176 2.5e-25 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 849
AasI GACNNNNNNGTC 1 cut(s) 365
AccB1I GGYRCC 3 cut(s) 152, 233, 859
AccB7I CCANNNNNTGG 2 cut(s) 439, 779
AccBSI CCGCTC 1 cut(s) 620
AccI GTMKAC 1 cut(s) 357
AciI CCGC 5 cut(s) 68, 285, 478, 618, 725
AclWI GGATC 4 cut(s) 124, 205, 429, 469
AcoI YGGCCR 2 cut(s) 807, 854
AcuI CTGAAG 2 cut(s) 489, 534
AcyI GRCGYC 1 cut(s) 153
AdeI CACNNNGTG 2 cut(s) 103, 184
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 5 cut(s) 247, 385, 439, 593, 779
AgeI ACCGGT 1 cut(s) 230
AgsI TTSAA 2 cut(s) 328, 490
AjiI CACGTC 1 cut(s) 690
AjnI CCWGG 2 cut(s) 75, 778
AluBI AGCT 4 cut(s) 36, 532, 536, 540
AluI AGCT 4 cut(s) 36, 532, 536, 540
Alw21I GWGCWC 2 cut(s) 38, 648
Alw26I GTCTC 2 cut(s) 41, 619
AlwI GGATC 4 cut(s) 124, 205, 429, 469
AoxI GGCC 8 cut(s) 72, 309, 412, 726, 785, 807, 854, 890
ApeKI GCWGC 5 cut(s) 114, 195, 389, 540, 698
AsiGI ACCGGT 1 cut(s) 230
Asp700I GAANNNNTTC 2 cut(s) 332, 503
AspLEI GCGC 3 cut(s) 119, 155, 200
AspS9I GGNCC 2 cut(s) 73, 412
AsuHPI GGTGA 3 cut(s) 139, 220, 262
AsuNHI GCTAGC 2 cut(s) 532, 536
BanI GGYRCC 3 cut(s) 152, 233, 859
BanII GRGCYC 2 cut(s) 38, 798
BbsI GAAGAC 1 cut(s) 467
Bbv12I GWGCWC 2 cut(s) 38, 648
BbvI GCAGC 5 cut(s) 101, 182, 376, 527, 685
BccI CCATC 6 cut(s) 98, 164, 179, 245, 818, 831
BceAI ACGGC 3 cut(s) 127, 208, 307
BcgI CGANNNNNNTGC 4 cut(s) 118, 152, 199, 233
BciT130I CCWGG 2 cut(s) 77, 780
BcoDI GTCTC 2 cut(s) 41, 619
BfaI CTAG 6 cut(s) 161, 242, 533, 537, 669, 756
BfmI CTRYAG 1 cut(s) 702
BfoI RGCGCY 1 cut(s) 156
BisI GCNGC 7 cut(s) 115, 196, 286, 390, 541, 699, 726
BlsI GCNGC 7 cut(s) 116, 197, 287, 391, 542, 700, 727
BmcAI AGTACT 1 cut(s) 260
Bme1390I CCNGG 2 cut(s) 77, 780
BmgBI CACGTC 1 cut(s) 690
BmgT120I GGNCC 2 cut(s) 73, 412
BmiI GGNNCC 4 cut(s) 154, 235, 861, 867
BmrFI CCNGG 2 cut(s) 77, 780
BmsI GCATC 1 cut(s) 557
BmtI GCTAGC 2 cut(s) 536, 540
BpiI GAAGAC 1 cut(s) 467
BplI GAGNNNNNCTC 2 cut(s) 323, 355
BsaHI GRCGYC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 3 cut(s) 75, 246, 714
BsaWI WCCGGW 1 cut(s) 230
BsaXI ACNNNNNCTCC 4 cut(s) 558, 588, 590, 620
Bsc4I CCNNNNNNNGG 5 cut(s) 247, 385, 439, 593, 779
Bse118I RCCGGY 4 cut(s) 149, 230, 311, 856
BseBI CCWGG 2 cut(s) 77, 780
BseDI CCNNGG 3 cut(s) 75, 246, 714
BseGI GGATG 4 cut(s) 156, 237, 654, 685
BseLI CCNNNNNNNGG 5 cut(s) 247, 385, 439, 593, 779
BseRI GAGGAG 4 cut(s) 293, 536, 539, 566
BseXI GCAGC 5 cut(s) 101, 182, 376, 527, 685
BshFI GGCC 8 cut(s) 74, 311, 414, 728, 787, 809, 856, 892
BshNI GGYRCC 3 cut(s) 152, 233, 859
BshTI ACCGGT 1 cut(s) 230
BsiHKAI GWGCWC 2 cut(s) 38, 648
BsiSI CCGG 5 cut(s) 150, 231, 312, 857, 863
BslFI GGGAC 1 cut(s) 820
BslI CCNNNNNNNGG 5 cut(s) 247, 385, 439, 593, 779
BsmAI GTCTC 2 cut(s) 41, 619
BsmFI GGGAC 1 cut(s) 820
BsnI GGCC 8 cut(s) 74, 311, 414, 728, 787, 809, 856, 892
Bso31I GGTCTC 1 cut(s) 41
Bsp1286I GDGCHC 3 cut(s) 38, 648, 798
Bsp143I GATC 6 cut(s) 18, 129, 210, 252, 421, 474
BspACI CCGC 5 cut(s) 68, 285, 478, 618, 725
BspANI GGCC 8 cut(s) 74, 311, 414, 728, 787, 809, 856, 892
BspLI GGNNCC 4 cut(s) 154, 235, 861, 867
BspOI GCTAGC 2 cut(s) 536, 540
BspPI GGATC 4 cut(s) 124, 205, 429, 469
BspT107I GGYRCC 3 cut(s) 152, 233, 859
BspTNI GGTCTC 1 cut(s) 41
BsrBI CCGCTC 1 cut(s) 620
BsrFI RCCGGY 4 cut(s) 149, 230, 311, 856
BssAI RCCGGY 4 cut(s) 149, 230, 311, 856
BssECI CCNNGG 3 cut(s) 75, 246, 714
BssMI GATC 6 cut(s) 18, 129, 210, 252, 421, 474
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 2 cut(s) 77, 780
Bst4CI ACNGT 3 cut(s) 439, 706, 718
Bst6I CTCTTC 2 cut(s) 465, 513
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 3 cut(s) 313, 534, 538
BstDEI CTNAG 1 cut(s) 732
BstDSI CCRYGG 1 cut(s) 714
BstENI CCTNNNNNAGG 1 cut(s) 245
BstF5I GGATG 4 cut(s) 156, 237, 654, 685
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 3 cut(s) 119, 155, 200
BstKTI GATC 6 cut(s) 21, 132, 213, 255, 424, 477
BstMAI GTCTC 2 cut(s) 41, 619
BstMBI GATC 6 cut(s) 18, 129, 210, 252, 421, 474
BstMWI GCNNNNNNNGC 7 cut(s) 125, 161, 206, 242, 562, 793, 815
BstNI CCWGG 2 cut(s) 77, 780
BstSCI CCNGG 2 cut(s) 75, 778
BstSFI CTRYAG 1 cut(s) 702
BstV1I GCAGC 5 cut(s) 101, 182, 376, 527, 685
BstV2I GAAGAC 1 cut(s) 467
BstX2I RGATCY 2 cut(s) 421, 474
BstXI CCANNNNNNTGG 1 cut(s) 721
BstYI RGATCY 2 cut(s) 421, 474
BsuRI GGCC 8 cut(s) 74, 311, 414, 728, 787, 809, 856, 892
BtgI CCRYGG 1 cut(s) 714
BtgZI GCGATG 1 cut(s) 799
BtrI CACGTC 1 cut(s) 690
BtsCI GGATG 4 cut(s) 156, 237, 654, 685
BtsIMutI CAGTG 1 cut(s) 711
Cac8I GCNNGC 3 cut(s) 313, 534, 538
CfoI GCGC 3 cut(s) 119, 155, 200
Cfr10I RCCGGY 4 cut(s) 149, 230, 311, 856
Cfr13I GGNCC 2 cut(s) 73, 412
CsiI ACCWGGT 1 cut(s) 778
Csp6I GTAC 1 cut(s) 259
CspAI ACCGGT 1 cut(s) 230
CviAII CATG 4 cut(s) 100, 181, 448, 832
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 1 cut(s) 732
DinI GGCGCC 1 cut(s) 154
DpnI GATC 6 cut(s) 20, 131, 212, 254, 423, 476
DpnII GATC 6 cut(s) 18, 129, 210, 252, 421, 474
DraIII CACNNNGTG 2 cut(s) 103, 184
DrdI GACNNNNNNGTC 1 cut(s) 365
DseDI GACNNNNNNGTC 1 cut(s) 365
EaeI YGGCCR 2 cut(s) 807, 854
Eam1104I CTCTTC 2 cut(s) 465, 513
EarI CTCTTC 2 cut(s) 465, 513
Ecl136II GAGCTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 246
Eco24I GRGCYC 2 cut(s) 38, 798
Eco31I GGTCTC 1 cut(s) 41
Eco53kI GAGCTC 1 cut(s) 36
Eco57I CTGAAG 2 cut(s) 489, 534
EcoICRI GAGCTC 1 cut(s) 36
EcoNI CCTNNNNNAGG 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 412
EcoRII CCWGG 2 cut(s) 75, 778
EcoT14I CCWWGG 1 cut(s) 246
EcoT38I GRGCYC 2 cut(s) 38, 798
EgeI GGCGCC 1 cut(s) 154
EheI GGCGCC 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 4 cut(s) 103, 184, 451, 835
FaiI YATR 9 cut(s) 23, 101, 182, 449, 660, 665, 722, 833, 849
FalI AAGNNNNNCTT 2 cut(s) 488, 520
FaqI GGGAC 1 cut(s) 820
FatI CATG 4 cut(s) 99, 180, 447, 831
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 7 cut(s) 115, 196, 286, 390, 541, 699, 726
FokI GGATG 4 cut(s) 143, 224, 641, 692
FriOI GRGCYC 2 cut(s) 38, 798
Fsp4HI GCNGC 7 cut(s) 115, 196, 286, 390, 541, 699, 726
FspBI CTAG 6 cut(s) 161, 242, 533, 537, 669, 756
GlaI GCGC 3 cut(s) 118, 154, 199
GluI GCNGC 7 cut(s) 115, 196, 286, 390, 541, 699, 726
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 8 cut(s) 74, 311, 414, 728, 787, 809, 856, 892
HapII CCGG 5 cut(s) 150, 231, 312, 857, 863
HhaI GCGC 3 cut(s) 119, 155, 200
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 4 cut(s) 103, 184, 451, 835
Hin6I GCGC 3 cut(s) 117, 153, 198
HinP1I GCGC 3 cut(s) 117, 153, 198
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 5 cut(s) 80, 317, 338, 463, 803
HpaII CCGG 5 cut(s) 150, 231, 312, 857, 863
HphI GGTGA 3 cut(s) 139, 220, 262
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 5 cut(s) 10, 40, 343, 402, 426
Hpy188III TCNNGA 3 cut(s) 419, 467, 512
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 1 cut(s) 691
HpyAV CCTTC 4 cut(s) 61, 295, 322, 425
HpyCH4III ACNGT 3 cut(s) 439, 706, 718
HpyCH4IV ACGT 5 cut(s) 144, 225, 273, 366, 689
HpyCH4V TGCA 2 cut(s) 264, 543
HpyF10VI GCNNNNNNNGC 7 cut(s) 125, 161, 206, 242, 562, 793, 815
HpyF3I CTNAG 1 cut(s) 732
HpySE526I ACGT 5 cut(s) 144, 225, 273, 366, 689
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 4 cut(s) 103, 184, 451, 835
HspAI GCGC 3 cut(s) 117, 153, 198
KasI GGCGCC 1 cut(s) 152
KroI GCCGGC 1 cut(s) 311
KroNI GCCGGC 1 cut(s) 313
Kzo9I GATC 6 cut(s) 18, 129, 210, 252, 421, 474
LmnI GCTCC 4 cut(s) 41, 625, 651, 865
Lsp1109I GCAGC 5 cut(s) 101, 182, 376, 527, 685
LweI GCATC 1 cut(s) 557
MabI ACCWGGT 1 cut(s) 778
MaeI CTAG 6 cut(s) 161, 242, 533, 537, 669, 756
MaeII ACGT 5 cut(s) 144, 225, 273, 366, 689
MaeIII GTNAC 3 cut(s) 145, 226, 682
MalI GATC 6 cut(s) 20, 131, 212, 254, 423, 476
MbiI CCGCTC 1 cut(s) 620
MboI GATC 6 cut(s) 18, 129, 210, 252, 421, 474
MboII GAAGA 7 cut(s) 25, 28, 472, 482, 527, 530, 627
MflI RGATCY 2 cut(s) 421, 474
MhlI GDGCHC 3 cut(s) 38, 648, 798
MluCI AATT 1 cut(s) 850
Mly113I GGCGCC 1 cut(s) 153
MlyI GAGTC 3 cut(s) 311, 332, 457
MmeI TCCRAC 2 cut(s) 63, 725
MroNI GCCGGC 1 cut(s) 311
MroXI GAANNNNTTC 2 cut(s) 332, 503
MseI TTAA 2 cut(s) 453, 495
MslI CAYNNNNRTG 1 cut(s) 719
MspI CCGG 5 cut(s) 150, 231, 312, 857, 863
MspR9I CCNGG 2 cut(s) 77, 780
MvaI CCWGG 2 cut(s) 77, 780
MwoI GCNNNNNNNGC 7 cut(s) 125, 161, 206, 242, 562, 793, 815
NaeI GCCGGC 1 cut(s) 313
NarI GGCGCC 1 cut(s) 153
NdeII GATC 6 cut(s) 18, 129, 210, 252, 421, 474
NgoMIV GCCGGC 1 cut(s) 311
NheI GCTAGC 2 cut(s) 532, 536
NlaIII CATG 4 cut(s) 103, 184, 451, 835
NlaIV GGNNCC 4 cut(s) 154, 235, 861, 867
NmeAIII GCCGAG 1 cut(s) 573
NmuCI GTSAC 2 cut(s) 145, 226
PcsI WCGNNNNNNNCGW 5 cut(s) 51, 117, 198, 363, 372
PdiI GCCGGC 1 cut(s) 313
PdmI GAANNNNTTC 2 cut(s) 332, 503
PfeI GAWTC 2 cut(s) 80, 803
PflMI CCANNNNNTGG 2 cut(s) 439, 779
PinAI ACCGGT 1 cut(s) 230
PkrI GCNGC 7 cut(s) 116, 197, 287, 391, 542, 700, 727
PleI GAGTC 3 cut(s) 311, 332, 457
PluTI GGCGCC 1 cut(s) 156
PpsI GAGTC 3 cut(s) 311, 332, 457
PsiI TTATAA 1 cut(s) 849
Psp124BI GAGCTC 1 cut(s) 38
Psp6I CCWGG 2 cut(s) 75, 778
PspGI CCWGG 2 cut(s) 75, 778
PspN4I GGNNCC 4 cut(s) 154, 235, 861, 867
PspPI GGNCC 2 cut(s) 73, 412
PsuI RGATCY 2 cut(s) 421, 474
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 719
SacI GAGCTC 1 cut(s) 38
SalI GTCGAC 1 cut(s) 356
SaqAI TTAA 2 cut(s) 453, 495
SatI GCNGC 7 cut(s) 115, 196, 286, 390, 541, 699, 726
Sau3AI GATC 6 cut(s) 18, 129, 210, 252, 421, 474
Sau96I GGNCC 2 cut(s) 73, 412
ScaI AGTACT 1 cut(s) 260
SchI GAGTC 3 cut(s) 311, 332, 457
ScrFI CCNGG 2 cut(s) 77, 780
SduI GDGCHC 3 cut(s) 38, 648, 798
SexAI ACCWGGT 1 cut(s) 778
SfaNI GCATC 1 cut(s) 557
SfcI CTRYAG 1 cut(s) 702
SfoI GGCGCC 1 cut(s) 154
SgrAI CRCCGGYG 2 cut(s) 149, 230
SmiMI CAYNNNNRTG 1 cut(s) 719
Sse9I AATT 1 cut(s) 850
SsiI CCGC 5 cut(s) 68, 285, 478, 618, 725
SspDI GGCGCC 1 cut(s) 152
SspMI CTAG 6 cut(s) 161, 242, 533, 537, 669, 756
SstI GAGCTC 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 75, 778
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 3 cut(s) 439, 706, 718
TaiI ACGT 5 cut(s) 147, 228, 276, 369, 692
TaqI TCGA 6 cut(s) 54, 60, 255, 336, 357, 375
TasI AATT 1 cut(s) 850
TatI WGTACW 1 cut(s) 258
TauI GCSGC 2 cut(s) 288, 728
TfiI GAWTC 2 cut(s) 80, 803
Tru1I TTAA 2 cut(s) 453, 495
Tru9I TTAA 2 cut(s) 453, 495
TscAI CASTG 1 cut(s) 711
TseFI GTSAC 2 cut(s) 145, 226
TseI GCWGC 5 cut(s) 114, 195, 389, 540, 698
Tsp45I GTSAC 2 cut(s) 145, 226
TspDTI ATGAA 2 cut(s) 337, 820
TspRI CASTG 1 cut(s) 711
Van91I CCANNNNNTGG 2 cut(s) 439, 779
XagI CCTNNNNNAGG 1 cut(s) 245
XcmI CCANNNNNNNNNTGG 2 cut(s) 97, 178
XmiI GTMKAC 1 cut(s) 357
XmnI GAANNNNTTC 2 cut(s) 332, 503
XspI CTAG 6 cut(s) 161, 242, 533, 537, 669, 756
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.