Rmu_sc0000144.1_g000046

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000144.1
N/A
Physical Location & Seq
Forward (+)
204330 .. 207337
3008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000144.1_g000046.1.cds

Sequence Viewer

Length: 570 bp
atgaccctacacgtcacgactcgtcaatttttactcgcgtatctaagcttcaacagtttcaaaggggaaattcctaaggagcttgctaatcttccagctcttcgctatctctatctgcaagaaaatcgtcttattgggcgaattccacccgaactaggaactctgcaaaatcttcggcacttggatgtcggcaacaatcatttggtgggtactattcgggaactcatacgcattgagggctgctttccggctttgcgtaacctttacctaaacaacaattatcttacgggaggaattccagctcaacttgccaacttgaccaatttggaaatcttgtacctgtcttacaacaagatgtctgggattgttccattagcaatatcccatattcctcgattgacttacttgtacctggatcacaatcagttttcagggagaattcctgatgccttctataaacactcattcttgaaagacatgtatattgaagggaatgcattcaagccaggtgtaaaaccgataggcatacacaaagttcttgagctcactgacacggaattcctggtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

189

Amino Acids

21.6

Weight (kDa)

8.95

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 38
AclWI GGATC 1 cut(s) 423
AcsI RAATTY 5 cut(s) 69, 141, 294, 438, 557
AfaI GTAC 3 cut(s) 211, 338, 410
AfiI CCNNNNNNNGG 1 cut(s) 155
AflIII ACRYGT 2 cut(s) 10, 477
AgsI TTSAA 5 cut(s) 52, 61, 472, 488, 502
AjiI CACGTC 1 cut(s) 13
AjnI CCWGG 3 cut(s) 411, 505, 561
AluBI AGCT 5 cut(s) 48, 82, 98, 302, 544
AluI AGCT 5 cut(s) 48, 82, 98, 302, 544
Alw21I GWGCWC 1 cut(s) 546
AlwI GGATC 1 cut(s) 423
ApeKI GCWGC 1 cut(s) 240
ApoI RAATTY 5 cut(s) 69, 141, 294, 438, 557
Asp700I GAANNNNTTC 1 cut(s) 497
AxyI CCTNAGG 1 cut(s) 75
BaeI ACNNNNGTAYC 2 cut(s) 23, 56
BanII GRGCYC 1 cut(s) 546
BarI GAAGNNNNNNTAC 2 cut(s) 32, 64
Bbv12I GWGCWC 1 cut(s) 546
BbvI GCAGC 1 cut(s) 227
BcgI CGANNNNNNTGC 4 cut(s) 107, 141, 155, 189
BciT130I CCWGG 3 cut(s) 413, 507, 563
BfaI CTAG 2 cut(s) 155, 568
BisI GCNGC 1 cut(s) 241
BlsI GCNGC 1 cut(s) 242
Bme1390I CCNGG 3 cut(s) 413, 507, 563
BmgBI CACGTC 1 cut(s) 13
BmrFI CCNGG 3 cut(s) 413, 507, 563
BmsI GCATC 1 cut(s) 436
BpuEI CTTGAG 1 cut(s) 560
BsaBI GATNNNNATC 1 cut(s) 420
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse21I CCTNAGG 1 cut(s) 75
Bse8I GATNNNNATC 1 cut(s) 420
BseBI CCWGG 3 cut(s) 413, 507, 563
BseGI GGATG 1 cut(s) 190
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 546
BsiSI CCGG 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 155
BsmI GAATGC 2 cut(s) 497, 499
Bsp1286I GDGCHC 1 cut(s) 546
Bsp143I GATC 1 cut(s) 415
BspFNI CGCG 1 cut(s) 38
BspPI GGATC 1 cut(s) 423
BspQI GCTCTTC 1 cut(s) 105
BssMI GATC 1 cut(s) 415
Bst2UI CCWGG 3 cut(s) 413, 507, 563
Bst4CI ACNGT 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 44, 75
BstF5I GGATG 1 cut(s) 190
BstFNI CGCG 1 cut(s) 38
BstKTI GATC 1 cut(s) 418
BstMBI GATC 1 cut(s) 415
BstMWI GCNNNNNNNGC 2 cut(s) 237, 308
BstNI CCWGG 3 cut(s) 413, 507, 563
BstNSI RCATGY 1 cut(s) 481
BstSCI CCNGG 3 cut(s) 411, 505, 561
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 227
Bsu36I CCTNAGG 1 cut(s) 75
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 546
Cac8I GCNNGC 1 cut(s) 84
Csp6I GTAC 3 cut(s) 210, 337, 409
CviAII CATG 1 cut(s) 478
CviJI RGCY 8 cut(s) 48, 82, 98, 240, 251, 302, 505, 544
CviKI_1 RGCY 8 cut(s) 48, 82, 98, 240, 251, 302, 505, 544
CviQI GTAC 3 cut(s) 210, 337, 409
DdeI CTNAG 2 cut(s) 44, 75
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Ecl136II GAGCTC 1 cut(s) 544
Eco24I GRGCYC 1 cut(s) 546
Eco53kI GAGCTC 1 cut(s) 544
Eco81I CCTNAGG 1 cut(s) 75
EcoICRI GAGCTC 1 cut(s) 544
EcoRI GAATTC 4 cut(s) 141, 294, 438, 557
EcoRII CCWGG 3 cut(s) 411, 505, 561
EcoT22I ATGCAT 1 cut(s) 499
EcoT38I GRGCYC 1 cut(s) 546
FaeI CATG 1 cut(s) 481
FaiI YATR 6 cut(s) 227, 387, 456, 479, 483, 527
FatI CATG 1 cut(s) 477
Fnu4HI GCNGC 1 cut(s) 241
FokI GGATG 1 cut(s) 197
FriOI GRGCYC 1 cut(s) 546
Fsp4HI GCNGC 1 cut(s) 241
FspBI CTAG 2 cut(s) 155, 568
GluI GCNGC 1 cut(s) 241
HapII CCGG 1 cut(s) 248
Hin1II CATG 1 cut(s) 481
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 1 cut(s) 19
HpaII CCGG 1 cut(s) 248
Hpy188III TCNNGA 5 cut(s) 16, 218, 443, 469, 539
HpyAV CCTTC 2 cut(s) 460, 482
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 3 cut(s) 118, 166, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 237, 308
HpyF3I CTNAG 2 cut(s) 44, 75
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 1 cut(s) 481
Kzo9I GATC 1 cut(s) 415
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 79
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 1 cut(s) 436
MaeI CTAG 2 cut(s) 155, 568
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 2 cut(s) 13, 257
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MboII GAAGA 3 cut(s) 83, 92, 164
MhlI GDGCHC 1 cut(s) 546
MluCI AATT 8 cut(s) 26, 69, 141, 277, 294, 322, 438, 557
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 3 cut(s) 229, 284, 402
Mph1103I ATGCAT 1 cut(s) 499
MroXI GAANNNNTTC 1 cut(s) 497
MslI CAYNNNNRTG 1 cut(s) 183
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 3 cut(s) 413, 507, 563
Mva1269I GAATGC 2 cut(s) 497, 499
MvaI CCWGG 3 cut(s) 413, 507, 563
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 237, 308
NdeII GATC 1 cut(s) 415
NlaIII CATG 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 13
NsiI ATGCAT 1 cut(s) 499
NspI RCATGY 1 cut(s) 481
PciI ACATGT 1 cut(s) 477
PciSI GCTCTTC 1 cut(s) 105
PctI GAATGC 2 cut(s) 497, 499
PdmI GAANNNNTTC 1 cut(s) 497
PkrI GCNGC 1 cut(s) 242
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PscI ACATGT 1 cut(s) 477
Psp124BI GAGCTC 1 cut(s) 546
Psp6I CCWGG 3 cut(s) 411, 505, 561
PspGI CCWGG 3 cut(s) 411, 505, 561
RsaI GTAC 3 cut(s) 211, 338, 410
RsaNI GTAC 3 cut(s) 210, 337, 409
RseI CAYNNNNRTG 1 cut(s) 183
SacI GAGCTC 1 cut(s) 546
SapI GCTCTTC 1 cut(s) 105
SatI GCNGC 1 cut(s) 241
Sau3AI GATC 1 cut(s) 415
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 3 cut(s) 413, 507, 563
SduI GDGCHC 1 cut(s) 546
SfaNI GCATC 1 cut(s) 436
SmiMI CAYNNNNRTG 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 8 cut(s) 26, 69, 141, 277, 294, 322, 438, 557
SspMI CTAG 2 cut(s) 155, 568
SstI GAGCTC 1 cut(s) 546
StyD4I CCNGG 3 cut(s) 411, 505, 561
TaaI ACNGT 1 cut(s) 56
TaiI ACGT 1 cut(s) 15
TaqI TCGA 1 cut(s) 394
TasI AATT 8 cut(s) 26, 69, 141, 277, 294, 322, 438, 557
TscAI CASTG 1 cut(s) 553
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 1 cut(s) 240
Tsp45I GTSAC 1 cut(s) 13
TspGWI ACGGA 1 cut(s) 569
TspRI CASTG 1 cut(s) 553
XapI RAATTY 5 cut(s) 69, 141, 294, 438, 557
XceI RCATGY 1 cut(s) 481
XmnI GAANNNNTTC 1 cut(s) 497
XspI CTAG 2 cut(s) 155, 568
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.