Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000173.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

73325 .. 76460

Gene Structure 3136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atgttgcggcttcgacatgatggagcagtgcatatcacggcgacgcggcgacgtgttcggatggagcgtggccggatcatagtgcacgacgggtctgggaggagccggtggactgatccaaaccaagaggatgggcctgataccaaagggggattcccgctatgtctacgtattgattgtacaatgagtgggtctatgtttctatgtaccgttgtgggtactaccactatcttcttgtctgtaaatggcagcggaaggcatgcttacaacccagatgaggagtatgcagaggtagaatccagattgcgttcacatttggaatcttttctagaaactgcaagatcattcaatatgatttacaccaagttcctagggaacttgaggaatgttagagactcacatgatgctcttgctgttggatcatctgactcagttgctggtgagccctcttctgtcacaagaataatctcagaatgtgaatctgcgttgacattcttaaatcgtgatcttggaattctctcggcttccattgctcgagagcaaggcgggctaccgccagagcccgggatcaccccgagatcacagttaacgcgccaccacgcgccgcgccaagttagcatcagaagctccagacgctgggagtcgaagcacatcagtcccacatctaaaacaaggagaagatcaaccttcccctcacctataaaagtaattgacttaggcatcggagaagtgaagaccgcccaacgcggtctccctctgacgccctatctctcgtgttacagcaagcggaagtcatcaaatcctcggagtagcggtccgcctacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0008017 GO:0008092 GO:0009524 GO:0015630 GO:0015631 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051011 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_NMP1

Protein Analysis

275

Amino Acids

30.47

Weight (kDa)

10.07

Isoelectric Point (pI)

74.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_NMP1	PF06694	85 - 122	7.5e-13	Plant nuclear matrix protein 1 (NMP1)
Plant_NMP1	PF06694	122 - 180	5.4e-22	Plant nuclear matrix protein 1 (NMP1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	636
AccI	GTMKAC	1 cut(s)	166
AccII	CGCG	5 cut(s)	46, 592, 602, 607, 747
AclWI	GGATC	4 cut(s)	83, 110, 427, 575
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	513
AcyI	GRCGYC	1 cut(s)	761
AfaI	GTAC	3 cut(s)	181, 208, 220
AfiI	CCNNNNNNNGG	3 cut(s)	277, 563, 636
AflIII	ACRYGT	1 cut(s)	52
AgsI	TTSAA	1 cut(s)	349
AjiI	CACGTC	1 cut(s)	53
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	1 cut(s)	627
AluI	AGCT	1 cut(s)	627
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	2 cut(s)	387, 755
Alw44I	GTGCAC	1 cut(s)	83
AlwI	GGATC	4 cut(s)	83, 110, 427, 575
AlwNI	CAGNNNCTG	2 cut(s)	437, 636
Ama87I	CYCGRG	3 cut(s)	534, 563, 574
AoxI	GGCC	2 cut(s)	70, 134
ApaLI	GTGCAC	1 cut(s)	83
ApeKI	GCWGC	1 cut(s)	249
ApoI	RAATTY	1 cut(s)	513
Asp700I	GAANNNNTTC	1 cut(s)	324
AspA2I	CCTAGG	1 cut(s)	370
AspLEI	GCGC	3 cut(s)	594, 604, 609
AspS9I	GGNCC	2 cut(s)	134, 815
AsuC2I	CCSGG	2 cut(s)	564, 565
AsuHPI	GGTGA	3 cut(s)	452, 562, 687
AvaI	CYCGRG	3 cut(s)	534, 563, 574
AvaII	GGWCC	1 cut(s)	815
AvrII	CCTAGG	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	87
BanII	GRGCYC	2 cut(s)	447, 564
BauI	CACGAG	1 cut(s)	772
BbsI	GAAGAC	1 cut(s)	740
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	3 cut(s)	14, 55, 125
BceAI	ACGGC	1 cut(s)	54
BcnI	CCSGG	2 cut(s)	564, 565
BcoDI	GTCTC	2 cut(s)	387, 755
BfaI	CTAG	2 cut(s)	329, 371
BisI	GCNGC	4 cut(s)	8, 47, 250, 605
BlnI	CCTAGG	1 cut(s)	370
BlsI	GCNGC	4 cut(s)	9, 48, 251, 606
Bme1390I	CCNGG	2 cut(s)	564, 565
Bme18I	GGWCC	1 cut(s)	815
BmeT110I	CYCGRG	3 cut(s)	534, 563, 574
BmgBI	CACGTC	1 cut(s)	53
BmgT120I	GGNCC	2 cut(s)	134, 815
BmiI	GGNNCC	1 cut(s)	104
BmrFI	CCNGG	2 cut(s)	564, 565
BmsI	GCATC	3 cut(s)	394, 627, 729
BpiI	GAAGAC	1 cut(s)	740
BpmI	CTGGAG	1 cut(s)	613
BpuEI	CTTGAG	1 cut(s)	400
BpuMI	CCSGG	2 cut(s)	564, 565
BsaAI	YACGTR	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	761
BsaI	GGTCTC	1 cut(s)	755
BsaJI	CCNNGG	3 cut(s)	370, 563, 803
BsaXI	ACNNNNNCTCC	3 cut(s)	735, 765, 799
Bsc4I	CCNNNNNNNGG	3 cut(s)	277, 563, 636
Bse118I	RCCGGY	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	528
BseDI	CCNNGG	3 cut(s)	370, 563, 803
BseGI	GGATG	2 cut(s)	66, 136
BseLI	CCNNNNNNNGG	3 cut(s)	277, 563, 636
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	2 cut(s)	444, 483
BseRI	GAGGAG	2 cut(s)	115, 293
BseSI	GKGCMC	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	261
BseYI	CCCAGC	1 cut(s)	636
Bsh1236I	CGCG	5 cut(s)	46, 592, 602, 607, 747
BshFI	GGCC	2 cut(s)	72, 136
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	3 cut(s)	534, 563, 574
BsiSI	CCGG	3 cut(s)	73, 106, 564
BslFI	GGGAC	1 cut(s)	642
BslI	CCNNNNNNNGG	3 cut(s)	277, 563, 636
BsmAI	GTCTC	2 cut(s)	387, 755
BsmFI	GGGAC	1 cut(s)	642
BsnI	GGCC	2 cut(s)	72, 136
Bso31I	GGTCTC	1 cut(s)	755
BsoBI	CYCGRG	3 cut(s)	534, 563, 574
Bsp1286I	GDGCHC	3 cut(s)	87, 447, 564
Bsp1407I	TGTACA	1 cut(s)	179
Bsp143I	GATC	8 cut(s)	75, 115, 341, 419, 505, 567, 578, 680
BspANI	GGCC	2 cut(s)	72, 136
BspCNI	CTCAG	2 cut(s)	443, 482
BspFNI	CGCG	5 cut(s)	46, 592, 602, 607, 747
BspLI	GGNNCC	1 cut(s)	104
BspPI	GGATC	4 cut(s)	83, 110, 427, 575
BspTNI	GGTCTC	1 cut(s)	755
BsrDI	GCAATG	1 cut(s)	528
BsrFI	RCCGGY	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	370, 563, 803
BssMI	GATC	8 cut(s)	75, 115, 341, 419, 505, 567, 578, 680
BssNI	GRCGYC	1 cut(s)	761
BssSI	CACGAG	1 cut(s)	772
BssT1I	CCWWGG	1 cut(s)	370
Bst2BI	CACGAG	1 cut(s)	772
Bst4CI	ACNGT	2 cut(s)	211, 585
Bst6I	CTCTTC	1 cut(s)	454
BstACI	GRCGYC	1 cut(s)	761
BstAUI	TGTACA	1 cut(s)	179
BstBAI	YACGTR	1 cut(s)	170
BstC8I	GCNNGC	3 cut(s)	261, 548, 785
BstDEI	CTNAG	3 cut(s)	430, 469, 715
BstF5I	GGATG	2 cut(s)	66, 136
BstFNI	CGCG	5 cut(s)	46, 592, 602, 607, 747
BstHHI	GCGC	3 cut(s)	594, 604, 609
BstKTI	GATC	8 cut(s)	78, 118, 344, 422, 508, 570, 581, 683
BstMAI	GTCTC	2 cut(s)	387, 755
BstMBI	GATC	8 cut(s)	75, 115, 341, 419, 505, 567, 578, 680
BstMWI	GCNNNNNNNGC	5 cut(s)	530, 547, 615, 624, 633
BstNSI	RCATGY	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	562, 563
BstSLI	GKGCMC	1 cut(s)	87
BstSNI	TACGTA	1 cut(s)	170
BstUI	CGCG	5 cut(s)	46, 592, 602, 607, 747
BstV1I	GCAGC	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	740
BstXI	CCANNNNNNTGG	1 cut(s)	131
BsuRI	GGCC	2 cut(s)	72, 136
BtrI	CACGTC	1 cut(s)	53
BtsCI	GGATG	2 cut(s)	66, 136
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	3 cut(s)	261, 548, 785
CaiI	CAGNNNCTG	2 cut(s)	437, 636
CfoI	GCGC	3 cut(s)	594, 604, 609
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	2 cut(s)	134, 815
Cfr9I	CCCGGG	1 cut(s)	563
CpoI	CGGWCCG	1 cut(s)	815
CseI	GACGC	3 cut(s)	52, 642, 769
Csp6I	GTAC	3 cut(s)	180, 207, 219
CspI	CGGWCCG	1 cut(s)	815
CviAII	CATG	3 cut(s)	17, 260, 401
CviJI	RGCY	9 cut(s)	10, 72, 105, 136, 445, 524, 550, 562, 627
CviKI_1	RGCY	9 cut(s)	10, 72, 105, 136, 445, 524, 550, 562, 627
CviQI	GTAC	3 cut(s)	180, 207, 219
DdeI	CTNAG	3 cut(s)	430, 469, 715
DpnI	GATC	8 cut(s)	77, 117, 343, 421, 507, 569, 580, 682
DpnII	GATC	8 cut(s)	75, 115, 341, 419, 505, 567, 578, 680
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
EciI	GGCGGA	1 cut(s)	807
Eco105I	TACGTA	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	370
Eco24I	GRGCYC	2 cut(s)	447, 564
Eco31I	GGTCTC	1 cut(s)	755
Eco47I	GGWCC	1 cut(s)	815
Eco88I	CYCGRG	3 cut(s)	534, 563, 574
EcoRI	GAATTC	1 cut(s)	513
EcoT14I	CCWWGG	1 cut(s)	370
EcoT38I	GRGCYC	2 cut(s)	447, 564
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	3 cut(s)	20, 263, 404
FalI	AAGNNNNNCTT	2 cut(s)	247, 279
FaqI	GGGAC	1 cut(s)	642
FatI	CATG	3 cut(s)	16, 259, 400
FauI	CCCGC	2 cut(s)	165, 539
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	4 cut(s)	8, 47, 250, 605
FokI	GGATG	2 cut(s)	73, 143
FriOI	GRGCYC	2 cut(s)	447, 564
Fsp4HI	GCNGC	4 cut(s)	8, 47, 250, 605
FspBI	CTAG	2 cut(s)	329, 371
GlaI	GCGC	3 cut(s)	593, 603, 608
GluI	GCNGC	4 cut(s)	8, 47, 250, 605
GsaI	CCCAGC	1 cut(s)	640
GsuI	CTGGAG	1 cut(s)	613
HaeIII	GGCC	2 cut(s)	72, 136
HapII	CCGG	3 cut(s)	73, 106, 564
HgaI	GACGC	3 cut(s)	52, 642, 769
HhaI	GCGC	3 cut(s)	594, 604, 609
Hin1I	GRCGYC	1 cut(s)	761
Hin1II	CATG	3 cut(s)	20, 263, 404
Hin6I	GCGC	3 cut(s)	592, 602, 607
HinP1I	GCGC	3 cut(s)	592, 602, 607
HincII	GTYRAC	2 cut(s)	489, 588
HindII	GTYRAC	2 cut(s)	489, 588
HinfI	GANTC	7 cut(s)	153, 296, 320, 395, 428, 479, 641
HpaI	GTTAAC	1 cut(s)	588
HpaII	CCGG	3 cut(s)	73, 106, 564
HphI	GGTGA	3 cut(s)	452, 562, 687
Hpy166II	GTNNAC	6 cut(s)	85, 111, 167, 311, 489, 588
Hpy188I	TCNGA	7 cut(s)	60, 427, 472, 623, 725, 759, 807
Hpy188III	TCNNGA	5 cut(s)	300, 329, 503, 536, 630
Hpy8I	GTNNAC	6 cut(s)	85, 111, 167, 311, 489, 588
Hpy99I	CGWCG	3 cut(s)	46, 54, 92
HpyAV	CCTTC	2 cut(s)	249, 697
HpyCH4III	ACNGT	2 cut(s)	211, 585
HpyCH4IV	ACGT	2 cut(s)	52, 169
HpyCH4V	TGCA	4 cut(s)	31, 85, 287, 338
HpyF10VI	GCNNNNNNNGC	5 cut(s)	530, 547, 615, 624, 633
HpyF3I	CTNAG	3 cut(s)	430, 469, 715
HpySE526I	ACGT	2 cut(s)	52, 169
Hsp92I	GRCGYC	1 cut(s)	761
Hsp92II	CATG	3 cut(s)	20, 263, 404
HspAI	GCGC	3 cut(s)	592, 602, 607
KspAI	GTTAAC	1 cut(s)	588
Kzo9I	GATC	8 cut(s)	75, 115, 341, 419, 505, 567, 578, 680
LmnI	GCTCC	4 cut(s)	23, 64, 102, 632
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	3 cut(s)	394, 627, 729
MaeI	CTAG	2 cut(s)	329, 371
MaeII	ACGT	2 cut(s)	52, 169
MaeIII	GTNAC	2 cut(s)	454, 776
MalI	GATC	8 cut(s)	77, 117, 343, 421, 507, 569, 580, 682
MboI	GATC	8 cut(s)	75, 115, 341, 419, 505, 567, 578, 680
MboII	GAAGA	4 cut(s)	223, 441, 690, 745
MhlI	GDGCHC	3 cut(s)	87, 447, 564
MluCI	AATT	2 cut(s)	513, 708
MlyI	GAGTC	3 cut(s)	389, 422, 650
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	9 cut(s)	93, 121, 271, 283, 375, 457, 703, 765, 813
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	2 cut(s)	497, 587
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	3 cut(s)	73, 106, 564
MspR9I	CCNGG	2 cut(s)	564, 565
MteI	GCGCNGCGC	1 cut(s)	605
MvnI	CGCG	5 cut(s)	46, 592, 602, 607, 747
MwoI	GCNNNNNNNGC	5 cut(s)	530, 547, 615, 624, 633
NciI	CCSGG	2 cut(s)	564, 565
NdeII	GATC	8 cut(s)	75, 115, 341, 419, 505, 567, 578, 680
NlaIII	CATG	3 cut(s)	20, 263, 404
NlaIV	GGNNCC	1 cut(s)	104
NmeAIII	GCCGAG	1 cut(s)	500
NmuCI	GTSAC	1 cut(s)	454
NspI	RCATGY	1 cut(s)	263
PaeI	GCATGC	1 cut(s)	263
PaeR7I	CTCGAG	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	4 cut(s)	153, 296, 320, 479
PflMI	CCANNNNNTGG	1 cut(s)	636
PkrI	GCNGC	4 cut(s)	9, 48, 251, 606
PleI	GAGTC	3 cut(s)	389, 422, 649
PpsI	GAGTC	3 cut(s)	389, 422, 649
Ppu21I	YACGTR	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	636
PspN4I	GGNNCC	1 cut(s)	104
PspPI	GGNCC	2 cut(s)	134, 815
PstNI	CAGNNNCTG	2 cut(s)	437, 636
RsaI	GTAC	3 cut(s)	181, 208, 220
RsaNI	GTAC	3 cut(s)	180, 207, 219
Rsr2I	CGGWCCG	1 cut(s)	815
RsrII	CGGWCCG	1 cut(s)	815
SaqAI	TTAA	2 cut(s)	497, 587
SatI	GCNGC	4 cut(s)	8, 47, 250, 605
Sau3AI	GATC	8 cut(s)	75, 115, 341, 419, 505, 567, 578, 680
Sau96I	GGNCC	2 cut(s)	134, 815
SchI	GAGTC	3 cut(s)	389, 422, 650
ScrFI	CCNGG	2 cut(s)	564, 565
SduI	GDGCHC	3 cut(s)	87, 447, 564
SetI	ASST	7 cut(s)	55, 172, 294, 629, 689, 700, 827
SfaNI	GCATC	3 cut(s)	394, 627, 729
Sfr274I	CTCGAG	1 cut(s)	534
SinI	GGWCC	1 cut(s)	815
SlaI	CTCGAG	1 cut(s)	534
SmaI	CCCGGG	1 cut(s)	565
SmlI	CTYRAG	2 cut(s)	379, 534
SmoI	CTYRAG	2 cut(s)	379, 534
SnaBI	TACGTA	1 cut(s)	170
SphI	GCATGC	1 cut(s)	263
Sse9I	AATT	2 cut(s)	513, 708
SspMI	CTAG	2 cut(s)	329, 371
StyD4I	CCNGG	2 cut(s)	562, 563
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	2 cut(s)	211, 585
TaiI	ACGT	2 cut(s)	55, 172
TaqI	TCGA	3 cut(s)	13, 535, 644
TasI	AATT	2 cut(s)	513, 708
TatI	WGTACW	1 cut(s)	179
TauI	GCSGC	3 cut(s)	10, 49, 607
TfiI	GAWTC	4 cut(s)	153, 296, 320, 479
Tru1I	TTAA	2 cut(s)	497, 587
Tru9I	TTAA	2 cut(s)	497, 587
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	1 cut(s)	249
Tsp45I	GTSAC	1 cut(s)	454
TspMI	CCCGGG	1 cut(s)	563
TspRI	CASTG	1 cut(s)	33
Van91I	CCANNNNNTGG	1 cut(s)	636
VneI	GTGCAC	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	815
XapI	RAATTY	1 cut(s)	513
XbaI	TCTAGA	1 cut(s)	328
XceI	RCATGY	1 cut(s)	263
XhoI	CTCGAG	1 cut(s)	534
XmaI	CCCGGG	1 cut(s)	563
XmaJI	CCTAGG	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	2 cut(s)	329, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.