Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000178.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

62287 .. 64697

Gene Structure 2411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ctgaagcagcttgcttcgaggactgttgcttcagatattgatccacttgttgctcttgtgcatcggccaaaggaatcctttttccttattcctcaggcagaaaaggtgaccgtggtatttcctatgagattcaaggactctattgacattgttcttgcaacttccttcctgcaggaatttgtggatgcaagacgtacggctggacttaataatgctccttactgtatgtggtctccgacccctcctttagaactaaagggagctcctgatgaagctctatctgtcaatgcgggatttgtcacttttgttgttttacctcgtcacgtggaaggcaagaaactggatcggacagtttggagtttatcaactttccatgcatatgttagttatcatgttaagtgttcagagggattcatgcatacaaggatgcgacgtcgtgtagaatctttgattgaggctcttgatcgtgctaagcttggaatggagaatgcaaggaataatgcagctcagaatagatcctttaaacggctgagcctcaaggaagctaggaaccattcttttaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0015629 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030479 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044085 GO:0044087 GO:0044089 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051493 GO:0051495 GO:0061645 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0098657 GO:0099568 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

P34-Arc

Protein Analysis

188

Amino Acids

21.33

Weight (kDa)

9.77

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P34-Arc	PF04045	13 - 159	7.4e-45	Arp2/3 complex, 34 kD subunit p34-Arc

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	436
AciI	CCGC	1 cut(s)	290
AclWI	GGATC	3 cut(s)	35, 351, 510
AcoI	YGGCCR	1 cut(s)	65
AcsI	RAATTY	1 cut(s)	176
AcuI	CTGAAG	2 cut(s)	15, 23
AcvI	CACGTG	1 cut(s)	325
AcyI	GRCGYC	1 cut(s)	433
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	525
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	6 cut(s)	10, 263, 275, 475, 506, 545
AluI	AGCT	6 cut(s)	10, 263, 275, 475, 506, 545
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	3 cut(s)	35, 351, 510
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	2 cut(s)	7, 503
ApoI	RAATTY	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	118
AxyI	CCTNAGG	1 cut(s)	93
BanII	GRGCYC	1 cut(s)	265
BbrPI	CACGTG	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	265
BbvI	GCAGC	2 cut(s)	19, 515
BceAI	ACGGC	2 cut(s)	213, 542
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	1 cut(s)	546
BfmI	CTRYAG	1 cut(s)	170
BisI	GCNGC	2 cut(s)	8, 504
BlpI	GCTNAGC	2 cut(s)	471, 530
BlsI	GCNGC	2 cut(s)	9, 505
BmiI	GGNNCC	1 cut(s)	551
BmsI	GCATC	3 cut(s)	70, 175, 417
Bpu1102I	GCTNAGC	2 cut(s)	471, 530
BpuEI	CTTGAG	1 cut(s)	521
BsaAI	YACGTR	1 cut(s)	325
BsaBI	GATNNNNATC	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	433
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	1 cut(s)	525
Bse1I	ACTGG	1 cut(s)	345
Bse21I	CCTNAGG	1 cut(s)	93
Bse8I	GATNNNNATC	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	2 cut(s)	190, 432
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	525
BseMII	CTCAG	3 cut(s)	107, 521, 521
BseNI	ACTGG	1 cut(s)	345
BseXI	GCAGC	2 cut(s)	19, 515
BshFI	GGCC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	265
BsiWI	CGTACG	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	525
BsmAI	GTCTC	1 cut(s)	237
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	1 cut(s)	67
Bso31I	GGTCTC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	4 cut(s)	40, 343, 463, 515
Bsp1720I	GCTNAGC	2 cut(s)	471, 530
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	3 cut(s)	106, 520, 522
BspLI	GGNNCC	1 cut(s)	551
BspMAI	CTGCAG	1 cut(s)	174
BspPI	GGATC	3 cut(s)	35, 351, 510
BspTNI	GGTCTC	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	4 cut(s)	40, 343, 463, 515
BssNI	GRCGYC	1 cut(s)	433
Bst4CI	ACNGT	4 cut(s)	25, 112, 224, 352
BstACI	GRCGYC	1 cut(s)	433
BstBAI	YACGTR	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	4 cut(s)	93, 471, 507, 530
BstDSI	CCRYGG	1 cut(s)	111
BstEII	GGTNACC	1 cut(s)	106
BstF5I	GGATG	2 cut(s)	190, 432
BstKTI	GATC	4 cut(s)	43, 346, 466, 518
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	4 cut(s)	40, 343, 463, 515
BstPI	GGTNACC	1 cut(s)	106
BstSFI	CTRYAG	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	19, 515
BstX2I	RGATCY	1 cut(s)	515
BstYI	RGATCY	1 cut(s)	515
Bsu36I	CCTNAGG	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	67
BtgI	CCRYGG	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	190, 432
Cac8I	GCNNGC	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	3 cut(s)	374, 392, 415
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	4 cut(s)	93, 471, 507, 530
DpnI	GATC	4 cut(s)	42, 345, 465, 517
DpnII	GATC	4 cut(s)	40, 343, 463, 515
DraI	TTTAAA	1 cut(s)	523
EaeI	YGGCCR	1 cut(s)	65
Ecl136II	GAGCTC	1 cut(s)	263
Eco24I	GRGCYC	1 cut(s)	265
Eco31I	GGTCTC	1 cut(s)	237
Eco53kI	GAGCTC	1 cut(s)	263
Eco57I	CTGAAG	2 cut(s)	15, 23
Eco72I	CACGTG	1 cut(s)	325
Eco81I	CCTNAGG	1 cut(s)	93
Eco91I	GGTNACC	1 cut(s)	106
EcoICRI	GAGCTC	1 cut(s)	263
EcoO65I	GGTNACC	1 cut(s)	106
EcoT22I	ATGCAT	2 cut(s)	379, 420
EcoT38I	GRGCYC	1 cut(s)	265
FaeI	CATG	3 cut(s)	377, 395, 418
FaiI	YATR	8 cut(s)	125, 227, 375, 379, 381, 393, 416, 420
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FatI	CATG	3 cut(s)	373, 391, 414
FauI	CCCGC	1 cut(s)	283
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	2 cut(s)	8, 504
FokI	GGATG	2 cut(s)	197, 439
FriOI	GRGCYC	1 cut(s)	265
Fsp4HI	GCNGC	2 cut(s)	8, 504
FspBI	CTAG	1 cut(s)	546
GluI	GCNGC	2 cut(s)	8, 504
HaeIII	GGCC	1 cut(s)	67
Hin1I	GRCGYC	1 cut(s)	433
Hin1II	CATG	3 cut(s)	377, 395, 418
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	5 cut(s)	74, 129, 137, 411, 443
HphI	GGTGA	1 cut(s)	118
Hpy188I	TCNGA	5 cut(s)	34, 237, 348, 406, 510
Hpy188III	TCNNGA	2 cut(s)	266, 461
Hpy99I	CGWCG	2 cut(s)	435, 438
HpyAV	CCTTC	2 cut(s)	175, 323
HpyCH4III	ACNGT	4 cut(s)	25, 112, 224, 352
HpyCH4IV	ACGT	3 cut(s)	193, 324, 433
HpyCH4V	TGCA	8 cut(s)	61, 158, 172, 188, 377, 418, 491, 503
HpyF3I	CTNAG	4 cut(s)	93, 471, 507, 530
HpySE526I	ACGT	3 cut(s)	193, 324, 433
Hsp92I	GRCGYC	1 cut(s)	433
Hsp92II	CATG	3 cut(s)	377, 395, 418
Kzo9I	GATC	4 cut(s)	40, 343, 463, 515
LmnI	GCTCC	3 cut(s)	220, 260, 268
LpnPI	CCDG	6 cut(s)	80, 158, 182, 186, 279, 326
Lsp1109I	GCAGC	2 cut(s)	19, 515
LweI	GCATC	3 cut(s)	70, 175, 417
MaeI	CTAG	1 cut(s)	546
MaeII	ACGT	3 cut(s)	193, 324, 433
MaeIII	GTNAC	3 cut(s)	106, 298, 320
MalI	GATC	4 cut(s)	42, 345, 465, 517
MboI	GATC	4 cut(s)	40, 343, 463, 515
MflI	RGATCY	1 cut(s)	515
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	2 cut(s)	176, 562
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	7 cut(s)	12, 102, 252, 327, 400, 448, 545
Mph1103I	ATGCAT	2 cut(s)	379, 420
MseI	TTAA	5 cut(s)	207, 396, 522, 561, 565
MslI	CAYNNNNRTG	1 cut(s)	378
Mva1269I	GAATGC	1 cut(s)	493
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	4 cut(s)	40, 343, 463, 515
NlaIII	CATG	3 cut(s)	377, 395, 418
NlaIV	GGNNCC	1 cut(s)	551
NmuCI	GTSAC	3 cut(s)	106, 298, 320
NsiI	ATGCAT	2 cut(s)	379, 420
PacI	TTAATTAA	1 cut(s)	565
PctI	GAATGC	1 cut(s)	493
PfeI	GAWTC	4 cut(s)	74, 129, 411, 443
Pfl23II	CGTACG	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	9, 505
PleI	GAGTC	1 cut(s)	131
PmaCI	CACGTG	1 cut(s)	325
PmlI	CACGTG	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	131
Ppu21I	YACGTR	1 cut(s)	325
Psp124BI	GAGCTC	1 cut(s)	265
PspCI	CACGTG	1 cut(s)	325
PspEI	GGTNACC	1 cut(s)	106
PspLI	CGTACG	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	551
PstI	CTGCAG	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	515
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	378
SacI	GAGCTC	1 cut(s)	265
SaqAI	TTAA	5 cut(s)	207, 396, 522, 561, 565
SatI	GCNGC	2 cut(s)	8, 504
Sau3AI	GATC	4 cut(s)	40, 343, 463, 515
SbfI	CCTGCAGG	1 cut(s)	174
SchI	GAGTC	1 cut(s)	131
SdaI	CCTGCAGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	265
SfaNI	GCATC	3 cut(s)	70, 175, 417
SfcI	CTRYAG	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse8387I	CCTGCAGG	1 cut(s)	174
Sse9I	AATT	2 cut(s)	176, 562
SsiI	CCGC	1 cut(s)	290
SspMI	CTAG	1 cut(s)	546
SstI	GAGCTC	1 cut(s)	265
TaaI	ACNGT	4 cut(s)	25, 112, 224, 352
TaiI	ACGT	3 cut(s)	196, 327, 436
TaqI	TCGA	1 cut(s)	17
TasI	AATT	2 cut(s)	176, 562
TfiI	GAWTC	4 cut(s)	74, 129, 411, 443
Tru1I	TTAA	5 cut(s)	207, 396, 522, 561, 565
Tru9I	TTAA	5 cut(s)	207, 396, 522, 561, 565
TseFI	GTSAC	3 cut(s)	106, 298, 320
TseI	GCWGC	2 cut(s)	7, 503
Tsp45I	GTSAC	3 cut(s)	106, 298, 320
TspDTI	ATGAA	2 cut(s)	285, 403
XapI	RAATTY	1 cut(s)	176
XspI	CTAG	1 cut(s)	546
ZraI	GACGTC	1 cut(s)	434
Zsp2I	ATGCAT	2 cut(s)	379, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.