Rmu_sc0000190.1_g000003

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000190.1
N/A
Physical Location & Seq
Reverse (-)
4177 .. 4635
459 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
atgtcgaagccaaagcttgactttcctatgcttgactcaactggctctgaatatcatagttgtgtcacggatgttgagaaccacctcacttcaaaggggatcattcccgatgctagagaattttgggttgcgctagaagagcgtttcggtgatgttaaggataccctcctctctgacttgaaagttcaatggggcaatttacgattcgccaatttcaagtctgtagctgaatataattcagaagttctgcgcctcaaaaccatgttggggttctgtggacaacctgtcacaaagcaagaactaattgagaaaagtctctccactttccctgtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.6

Weight (kDa)

5.34

Isoelectric Point (pI)

29.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 107
AcsI RAATTY 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 4 cut(s) 93, 181, 188, 217
AhdI GACNNNNNGTC 1 cut(s) 284
AluBI AGCT 2 cut(s) 16, 227
AluI AGCT 2 cut(s) 16, 227
Alw26I GTCTC 1 cut(s) 320
AlwI GGATC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 119
AspLEI GCGC 2 cut(s) 133, 252
AsuHPI GGTGA 1 cut(s) 161
BciVI GTATCC 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 320
BfaI CTAG 2 cut(s) 114, 134
BfmI CTRYAG 1 cut(s) 222
BfuI GTATCC 1 cut(s) 154
BmeRI GACNNNNNGTC 1 cut(s) 284
BmsI GCATC 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 320
Bsp143I GATC 1 cut(s) 99
BspPI GGATC 1 cut(s) 107
BspQI GCTCTTC 1 cut(s) 132
BsrI ACTGG 1 cut(s) 46
BssMI GATC 1 cut(s) 99
Bst6I CTCTTC 1 cut(s) 132
BstF5I GGATG 1 cut(s) 76
BstHHI GCGC 2 cut(s) 133, 252
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 222
BsuI GTATCC 1 cut(s) 154
BtsCI GGATG 1 cut(s) 76
CfoI GCGC 2 cut(s) 133, 252
CviAII CATG 1 cut(s) 262
CviJI RGCY 4 cut(s) 10, 16, 45, 227
CviKI_1 RGCY 4 cut(s) 10, 16, 45, 227
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
DriI GACNNNNNGTC 1 cut(s) 284
Eam1104I CTCTTC 1 cut(s) 132
Eam1105I GACNNNNNGTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 132
FaeI CATG 1 cut(s) 265
FaiI YATR 4 cut(s) 29, 57, 234, 263
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 1 cut(s) 261
FokI GGATG 1 cut(s) 83
FspBI CTAG 2 cut(s) 114, 134
GlaI GCGC 2 cut(s) 132, 251
HhaI GCGC 2 cut(s) 133, 252
Hin1II CATG 1 cut(s) 265
Hin6I GCGC 2 cut(s) 131, 250
HinP1I GCGC 2 cut(s) 131, 250
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 2 cut(s) 35, 204
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 3 cut(s) 49, 175, 241
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
Hsp92II CATG 1 cut(s) 265
HspAI GCGC 2 cut(s) 131, 250
Kzo9I GATC 1 cut(s) 99
LguI GCTCTTC 1 cut(s) 132
LpnPI CCDG 2 cut(s) 27, 297
LweI GCATC 1 cut(s) 100
MaeI CTAG 2 cut(s) 114, 134
MaeIII GTNAC 2 cut(s) 64, 286
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 1 cut(s) 149
MluCI AATT 5 cut(s) 119, 196, 211, 235, 303
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 4 cut(s) 95, 176, 179, 263
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 139
NdeII GATC 1 cut(s) 99
NlaIII CATG 1 cut(s) 265
NmuCI GTSAC 2 cut(s) 64, 286
PciSI GCTCTTC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 204
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 156
Sau3AI GATC 1 cut(s) 99
SchI GAGTC 1 cut(s) 29
SetI ASST 4 cut(s) 18, 87, 229, 286
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 60
Sse9I AATT 5 cut(s) 119, 196, 211, 235, 303
SspMI CTAG 2 cut(s) 114, 134
TaqI TCGA 1 cut(s) 5
TasI AATT 5 cut(s) 119, 196, 211, 235, 303
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseFI GTSAC 2 cut(s) 64, 286
Tsp45I GTSAC 2 cut(s) 64, 286
TspGWI ACGGA 1 cut(s) 83
XapI RAATTY 1 cut(s) 119
XspI CTAG 2 cut(s) 114, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.