Rmu_sc0000193.1_g000020

Condensin II non structural maintenance of chromosomes subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000193.1
N/A
Physical Location & Seq
Forward (+)
96394 .. 97643
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1185 bp
atggagaagcggctccgctcctctctccaatcctccgccgaagagtttctgacctccgccaccaagctcagcctcaaatcctcaaagccctctctcaaaaccctaatccacaaaatcaaaccctcctccgacctctcctcctctctccccatctctctctcccactccatttccgacgccatcctctccttccagacccttcttctgcaacccaaccctagatcccctcgctctccccccaccaagcgcccccgcaggtccagccggagctccaagacccgacccgaccgcgaacccgaaccagacctccatccggacccgaatcctgaggaggataagcatcaactgctctcgaagcttcagattctcgcctgtatagcgcaactatgcgctgggcatccggcgaaggcgttcccgccgttggatttgttgccgggagttcaagcgcttcacgacaatctgataattctggagtcggactcggcgctgtccctccctttcttgctctcgagatctctcactctgaacaagaaggcagactttcacagagtctacgccctccgcgaggctttcacctgcttcgatttcgaggacgacagcattgaggacttgaagctgttgctaatccggtgcgtgatttcgcctctgttttcagaaacagaggaggggaggaagtttctggcgtttctgtttgggttgagttcgcagctgttgaaggaggttttggctgtgatccagtctcagattccgtttggaaggaagtcgatgctggaggcctacggtgacgttttgttccgggcttggaaagtggcagagggggagctgaggagtgagattgagaacgggttcttgcaggttttgattgagggtgctatacacgccagctctgtagcatttgctgcatctattagaagggttttgggagggtttataaaccagaggaccactgctggtgtcgagaagcttcttttccagctctccgagcctgtcatatttcgctctttgcaggtagcttttttgttaacaagtttaatttgtggtatcagagactcgacttttggtatgtattttgaatggttggtttgttatggtagagactgtgttgatcatcttcctgatacaaagcaactggagaacgattcggtatgttttgagcttccgagcggaaagagttgtttaccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Condensin2nSMC

Protein Analysis

394

Amino Acids

43.92

Weight (kDa)

7.1

Isoelectric Point (pI)

64.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Condensin2nSMC PF12422 210 - 339 1.2e-44 Condensin II non structural maintenance of chromosomes subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 932
AarI CACCTGC 1 cut(s) 584
Acc36I ACCTGC 4 cut(s) 246, 584, 844, 997
AccBSI CCGCTC 2 cut(s) 18, 1164
AccI GTMKAC 1 cut(s) 552
AccII CGCG 2 cut(s) 291, 564
AccIII TCCGGA 1 cut(s) 313
AciI CCGC 9 cut(s) 10, 16, 36, 57, 253, 289, 416, 562, 1164
AclWI GGATC 2 cut(s) 216, 727
AcuI CTGAAG 1 cut(s) 344
AcyI GRCGYC 1 cut(s) 177
AfeI AGCGCT 1 cut(s) 447
AfiI CCNNNNNNNGG 3 cut(s) 313, 421, 565
AgsI TTSAA 4 cut(s) 443, 613, 715, 1073
AjuI GAANNNNNNNTTGG 2 cut(s) 707, 739
AloI GAACNNNNNNTCC 2 cut(s) 291, 323
Alw21I GWGCWC 1 cut(s) 272
Alw26I GTCTC 3 cut(s) 744, 1041, 1089
AlwI GGATC 2 cut(s) 216, 727
Ama87I CYCGRG 1 cut(s) 508
Aor13HI TCCGGA 1 cut(s) 313
Aor51HI AGCGCT 1 cut(s) 447
AoxI GGCC 1 cut(s) 774
ApeKI GCWGC 2 cut(s) 706, 899
ArsI GACNNNNNNTTYG 2 cut(s) 1040, 1072
Asp700I GAANNNNTTC 3 cut(s) 45, 410, 845
AspLEI GCGC 5 cut(s) 249, 382, 392, 448, 487
AspS9I GGNCC 3 cut(s) 258, 316, 942
AsuC2I CCSGG 2 cut(s) 435, 797
AsuHPI GGTGA 2 cut(s) 565, 794
AvaI CYCGRG 1 cut(s) 508
AvaII GGWCC 3 cut(s) 258, 316, 942
AxyI CCTNAGG 1 cut(s) 327
BanII GRGCYC 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 272
BbvCI CCTCAGC 1 cut(s) 824
BbvI GCAGC 2 cut(s) 718, 886
BccI CCATC 3 cut(s) 158, 188, 318
BceAI ACGGC 1 cut(s) 403
BclI TGATCA 1 cut(s) 1105
BcnI CCSGG 2 cut(s) 435, 797
BcoDI GTCTC 3 cut(s) 744, 1041, 1089
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 1 cut(s) 888
BfoI RGCGCY 3 cut(s) 250, 449, 488
BfuAI ACCTGC 4 cut(s) 246, 584, 844, 997
BglII AGATCT 1 cut(s) 512
BisI GCNGC 3 cut(s) 11, 707, 900
BlpI GCTNAGC 1 cut(s) 68
BlsI GCNGC 3 cut(s) 12, 708, 901
Bme1390I CCNGG 2 cut(s) 435, 797
Bme18I GGWCC 3 cut(s) 258, 316, 942
BmeT110I CYCGRG 1 cut(s) 508
BmgT120I GGNCC 3 cut(s) 258, 316, 942
BmiI GGNNCC 2 cut(s) 14, 318
BmrFI CCNGG 2 cut(s) 435, 797
BmsI GCATC 4 cut(s) 349, 406, 756, 911
BplI GAGNNNNNCTC 2 cut(s) 464, 496
BpmI CTGGAG 3 cut(s) 491, 791, 1151
Bpu10I CCTNAGC 1 cut(s) 824
Bpu1102I GCTNAGC 1 cut(s) 68
BpuMI CCSGG 2 cut(s) 435, 797
BsaBI GATNNNNATC 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 177
BsaWI WCCGGW 2 cut(s) 313, 627
BsaXI ACNNNNNCTCC 4 cut(s) 122, 152, 291, 321
Bsc4I CCNNNNNNNGG 3 cut(s) 313, 421, 565
Bse1I ACTGG 2 cut(s) 736, 1134
Bse21I CCTNAGG 1 cut(s) 327
Bse8I GATNNNNATC 1 cut(s) 339
BseAI TCCGGA 1 cut(s) 313
BseGI GGATG 3 cut(s) 180, 310, 397
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 3 cut(s) 313, 421, 565
BseMII CTCAG 4 cut(s) 82, 318, 755, 815
BseNI ACTGG 2 cut(s) 736, 1134
BseRI GAGGAG 7 cut(s) 10, 115, 127, 130, 344, 677, 841
BseXI GCAGC 2 cut(s) 718, 886
BseYI CCCAGC 1 cut(s) 392
Bsh1236I CGCG 2 cut(s) 291, 564
Bsh1285I CGRYCG 1 cut(s) 289
BshFI GGCC 1 cut(s) 776
BsiEI CGRYCG 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 272
BsiHKCI CYCGRG 1 cut(s) 508
BsiSI CCGG 6 cut(s) 265, 314, 401, 434, 628, 796
BslFI GGGAC 1 cut(s) 475
BslI CCNNNNNNNGG 3 cut(s) 313, 421, 565
BsmAI GTCTC 3 cut(s) 744, 1041, 1089
BsmFI GGGAC 1 cut(s) 475
BsnI GGCC 1 cut(s) 776
BsoBI CYCGRG 1 cut(s) 508
Bsp1286I GDGCHC 1 cut(s) 272
Bsp13I TCCGGA 1 cut(s) 313
Bsp143I GATC 4 cut(s) 221, 512, 732, 1105
Bsp1720I GCTNAGC 1 cut(s) 68
BspACI CCGC 9 cut(s) 10, 16, 36, 57, 253, 289, 416, 562, 1164
BspANI GGCC 1 cut(s) 776
BspCNI CTCAG 4 cut(s) 81, 319, 754, 816
BspEI TCCGGA 1 cut(s) 313
BspFNI CGCG 2 cut(s) 291, 564
BspLI GGNNCC 2 cut(s) 14, 318
BspMI ACCTGC 4 cut(s) 246, 584, 844, 997
BspPI GGATC 2 cut(s) 216, 727
BsrBI CCGCTC 2 cut(s) 18, 1164
BsrI ACTGG 2 cut(s) 736, 1134
BssMI GATC 4 cut(s) 221, 512, 732, 1105
BssNI GRCGYC 1 cut(s) 177
Bst4CI ACNGT 2 cut(s) 782, 1100
Bst6I CTCTTC 1 cut(s) 36
BstACI GRCGYC 1 cut(s) 177
BstAPI GCANNNNNTGC 2 cut(s) 346, 899
BstC8I GCNNGC 1 cut(s) 883
BstDEI CTNAG 4 cut(s) 68, 327, 741, 824
BstENI CCTNNNNNAGG 1 cut(s) 563
BstF5I GGATG 3 cut(s) 180, 310, 397
BstFNI CGCG 2 cut(s) 291, 564
BstH2I RGCGCY 3 cut(s) 250, 449, 488
BstHHI GCGC 5 cut(s) 249, 382, 392, 448, 487
BstKTI GATC 4 cut(s) 224, 515, 735, 1108
BstMAI GTCTC 3 cut(s) 744, 1041, 1089
BstMBI GATC 4 cut(s) 221, 512, 732, 1105
BstMCI CGRYCG 1 cut(s) 289
BstMWI GCNNNNNNNGC 7 cut(s) 261, 346, 355, 377, 878, 899, 982
BstSCI CCNGG 2 cut(s) 433, 795
BstSFI CTRYAG 1 cut(s) 888
BstUI CGCG 2 cut(s) 291, 564
BstV1I GCAGC 2 cut(s) 718, 886
BstX2I RGATCY 2 cut(s) 221, 512
BstYI RGATCY 2 cut(s) 221, 512
Bsu36I CCTNAGG 1 cut(s) 327
BsuRI GGCC 1 cut(s) 776
BtsCI GGATG 3 cut(s) 180, 310, 397
BtsI GCAGTG 1 cut(s) 945
BtsIMutI CAGTG 1 cut(s) 945
BveI ACCTGC 4 cut(s) 246, 584, 844, 997
Cac8I GCNNGC 1 cut(s) 883
CfoI GCGC 5 cut(s) 249, 382, 392, 448, 487
Cfr13I GGNCC 3 cut(s) 258, 316, 942
CseI GACGC 1 cut(s) 185
DdeI CTNAG 4 cut(s) 68, 327, 741, 824
DpnI GATC 4 cut(s) 223, 514, 734, 1107
DpnII GATC 4 cut(s) 221, 512, 732, 1105
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
EciI GGCGGA 2 cut(s) 25, 46
Ecl136II GAGCTC 1 cut(s) 270
Eco147I AGGCCT 1 cut(s) 776
Eco24I GRGCYC 1 cut(s) 272
Eco47I GGWCC 3 cut(s) 258, 316, 942
Eco47III AGCGCT 1 cut(s) 447
Eco53kI GAGCTC 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 344
Eco81I CCTNAGG 1 cut(s) 327
Eco88I CYCGRG 1 cut(s) 508
EcoICRI GAGCTC 1 cut(s) 270
EcoNI CCTNNNNNAGG 1 cut(s) 563
EcoT38I GRGCYC 1 cut(s) 272
FaiI YATR 8 cut(s) 377, 388, 875, 932, 992, 1064, 1089, 1147
FalI AAGNNNNNCTT 2 cut(s) 524, 556
FaqI GGGAC 1 cut(s) 475
FauI CCCGC 2 cut(s) 260, 423
FbaI TGATCA 1 cut(s) 1105
FblI GTMKAC 1 cut(s) 552
Fnu4HI GCNGC 3 cut(s) 11, 707, 900
FokI GGATG 3 cut(s) 167, 297, 384
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 3 cut(s) 11, 707, 900
FspBI CTAG 1 cut(s) 219
GlaI GCGC 5 cut(s) 248, 381, 391, 447, 486
GluI GCNGC 3 cut(s) 11, 707, 900
GsaI CCCAGC 1 cut(s) 396
GsuI CTGGAG 3 cut(s) 491, 791, 1151
HaeII RGCGCY 3 cut(s) 250, 449, 488
HaeIII GGCC 1 cut(s) 776
HapII CCGG 6 cut(s) 265, 314, 401, 434, 628, 796
HgaI GACGC 1 cut(s) 185
HhaI GCGC 5 cut(s) 249, 382, 392, 448, 487
Hin1I GRCGYC 1 cut(s) 177
Hin6I GCGC 5 cut(s) 247, 380, 390, 446, 485
HinP1I GCGC 5 cut(s) 247, 380, 390, 446, 485
HincII GTYRAC 1 cut(s) 1023
HindII GTYRAC 1 cut(s) 1023
HindIII AAGCTT 2 cut(s) 356, 962
HinfI GANTC 8 cut(s) 322, 364, 473, 479, 549, 745, 1049, 1139
HpaI GTTAAC 1 cut(s) 1023
HpaII CCGG 6 cut(s) 265, 314, 401, 434, 628, 796
HphI GGTGA 2 cut(s) 565, 794
Hpy166II GTNNAC 3 cut(s) 553, 1023, 1178
Hpy8I GTNNAC 3 cut(s) 553, 1023, 1178
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 7 cut(s) 199, 209, 400, 526, 709, 750, 906
HpyCH4III ACNGT 2 cut(s) 782, 1100
HpyCH4IV ACGT 1 cut(s) 786
HpyCH4V TGCA 4 cut(s) 208, 853, 902, 1006
HpyF10VI GCNNNNNNNGC 7 cut(s) 261, 346, 355, 377, 878, 899, 982
HpyF3I CTNAG 4 cut(s) 68, 327, 741, 824
HpySE526I ACGT 1 cut(s) 786
Hsp92I GRCGYC 1 cut(s) 177
HspAI GCGC 5 cut(s) 247, 380, 390, 446, 485
Kpn2I TCCGGA 1 cut(s) 313
Ksp22I TGATCA 1 cut(s) 1105
KspAI GTTAAC 1 cut(s) 1023
Kzo9I GATC 4 cut(s) 221, 512, 732, 1105
LmnI GCTCC 5 cut(s) 18, 23, 267, 275, 820
Lsp1109I GCAGC 2 cut(s) 718, 886
LweI GCATC 4 cut(s) 349, 406, 756, 911
MaeI CTAG 1 cut(s) 219
MaeII ACGT 1 cut(s) 786
MaeIII GTNAC 1 cut(s) 782
MalI GATC 4 cut(s) 223, 514, 734, 1107
MbiI CCGCTC 2 cut(s) 18, 1164
MboI GATC 4 cut(s) 221, 512, 732, 1105
MboII GAAGA 3 cut(s) 53, 194, 1103
MflI RGATCY 2 cut(s) 221, 512
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 2 cut(s) 465, 1032
MlyI GAGTC 4 cut(s) 473, 482, 558, 1043
MmeI TCCRAC 4 cut(s) 153, 198, 402, 456
MroI TCCGGA 1 cut(s) 313
MroXI GAANNNNTTC 3 cut(s) 45, 410, 845
MseI TTAA 3 cut(s) 1022, 1031, 1183
MspA1I CMGCKG 1 cut(s) 709
MspI CCGG 6 cut(s) 265, 314, 401, 434, 628, 796
MspR9I CCNGG 2 cut(s) 435, 797
MvnI CGCG 2 cut(s) 291, 564
MwoI GCNNNNNNNGC 7 cut(s) 261, 346, 355, 377, 878, 899, 982
NciI CCSGG 2 cut(s) 435, 797
NdeII GATC 4 cut(s) 221, 512, 732, 1105
NlaIV GGNNCC 2 cut(s) 14, 318
NmeAIII GCCGAG 1 cut(s) 461
NmuCI GTSAC 1 cut(s) 782
PaeR7I CTCGAG 1 cut(s) 508
PaqCI CACCTGC 1 cut(s) 584
PceI AGGCCT 1 cut(s) 776
PcsI WCGNNNNNNNCGW 1 cut(s) 561
PdmI GAANNNNTTC 3 cut(s) 45, 410, 845
PfeI GAWTC 4 cut(s) 322, 364, 745, 1139
PkrI GCNGC 3 cut(s) 12, 708, 901
PleI GAGTC 4 cut(s) 473, 481, 557, 1043
PpsI GAGTC 4 cut(s) 473, 481, 557, 1043
PsiI TTATAA 1 cut(s) 932
Psp124BI GAGCTC 1 cut(s) 272
PspFI CCCAGC 1 cut(s) 392
PspN4I GGNNCC 2 cut(s) 14, 318
PspPI GGNCC 3 cut(s) 258, 316, 942
PsuI RGATCY 2 cut(s) 221, 512
PvuII CAGCTG 1 cut(s) 709
SacI GAGCTC 1 cut(s) 272
SaqAI TTAA 3 cut(s) 1022, 1031, 1183
SatI GCNGC 3 cut(s) 11, 707, 900
Sau3AI GATC 4 cut(s) 221, 512, 732, 1105
Sau96I GGNCC 3 cut(s) 258, 316, 942
SchI GAGTC 4 cut(s) 473, 482, 558, 1043
ScrFI CCNGG 2 cut(s) 435, 797
SduI GDGCHC 1 cut(s) 272
SfaNI GCATC 4 cut(s) 349, 406, 756, 911
SfcI CTRYAG 1 cut(s) 888
Sfr274I CTCGAG 1 cut(s) 508
SinI GGWCC 3 cut(s) 258, 316, 942
SlaI CTCGAG 1 cut(s) 508
SmlI CTYRAG 1 cut(s) 508
SmoI CTYRAG 1 cut(s) 508
Sse9I AATT 2 cut(s) 465, 1032
SseBI AGGCCT 1 cut(s) 776
SsiI CCGC 9 cut(s) 10, 16, 36, 57, 253, 289, 416, 562, 1164
SspMI CTAG 1 cut(s) 219
SstI GAGCTC 1 cut(s) 272
StuI AGGCCT 1 cut(s) 776
StyD4I CCNGG 2 cut(s) 433, 795
TaaI ACNGT 2 cut(s) 782, 1100
TaiI ACGT 1 cut(s) 789
TaqI TCGA 7 cut(s) 353, 509, 582, 588, 764, 957, 1052
TasI AATT 2 cut(s) 465, 1032
TauI GCSGC 1 cut(s) 13
TfiI GAWTC 4 cut(s) 322, 364, 745, 1139
Tru1I TTAA 3 cut(s) 1022, 1031, 1183
Tru9I TTAA 3 cut(s) 1022, 1031, 1183
TscAI CASTG 1 cut(s) 952
TseFI GTSAC 1 cut(s) 782
TseI GCWGC 2 cut(s) 706, 899
Tsp45I GTSAC 1 cut(s) 782
TspGWI ACGGA 1 cut(s) 738
TspRI CASTG 1 cut(s) 952
VpaK11BI GGWCC 3 cut(s) 258, 316, 942
XagI CCTNNNNNAGG 1 cut(s) 563
XhoI CTCGAG 1 cut(s) 508
XmiI GTMKAC 1 cut(s) 552
XmnI GAANNNNTTC 3 cut(s) 45, 410, 845
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.