Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000200.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

127853 .. 130770

Gene Structure 2918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgtctgagatagtcaacgaggcttggagaaaataccgtatacaacttcagtcctaccctctcaggaccaaggcaattacagcaggagttttgattggggttagtgatggaatagcccagaagatctctgggatcaagaagcttcaactcagaagattgtttcttatgatgctctatgggtttgcgtatacggggccatttgggcacttcctccacaaattgatggatataatattcaagggaaagaaggacaacaaaactgttgcaaagaaggttctgctggaacagttaacttcatctccttggaacaacctgtttttcatgctgtactatggcttggtggttgaaggaagaccatggagtttagttcagacgaaagttcgaaacgactacccttctgttcagttgactgcatggaagttttggcctattgttggttgggtgaactaccagtatatgcctttgcagttccgggttttgtttcacagcttcattggttcatgctgggcaattttccttaatctgaaggctagatcagtgcttaaaagcccagattcatggcatgccgccgccatgatctggccactgaccactttgtccacgccgacgataccacccgagagaagcgaagaagcgtacctagccttgaccagcgaaaaggagaacaaggtacgaccccagagatcccaagataccgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0016020 GO:0016021 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

233

Amino Acids

26.98

Weight (kDa)

9.94

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mpv17_PMP22	PF04117	114 - 174	8.6e-20	Mpv17 / PMP22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	595
AccB7I	CCANNNNNTGG	1 cut(s)	579
AccI	GTMKAC	2 cut(s)	40, 188
AciI	CCGC	2 cut(s)	567, 570
AclWI	GGATC	2 cut(s)	140, 678
AcoI	YGGCCR	1 cut(s)	581
AcuI	CTGAAG	2 cut(s)	32, 545
AfaI	GTAC	3 cut(s)	329, 638, 672
AfiI	CCNNNNNNNGG	2 cut(s)	434, 579
AgsI	TTSAA	3 cut(s)	146, 238, 347
AluBI	AGCT	2 cut(s)	142, 489
AluI	AGCT	2 cut(s)	142, 489
AlwI	GGATC	2 cut(s)	140, 678
Ama87I	CYCGRG	1 cut(s)	617
AoxI	GGCC	3 cut(s)	194, 425, 581
AspS9I	GGNCC	2 cut(s)	66, 194
AsuC2I	CCSGG	1 cut(s)	473
AsuHPI	GGTGA	1 cut(s)	454
AsuII	TTCGAA	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	617
AvaII	GGWCC	1 cut(s)	66
BaeGI	GKGCMC	1 cut(s)	207
BalI	TGGCCA	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	358
BccI	CCATC	2 cut(s)	101, 217
BcnI	CCSGG	1 cut(s)	473
BfaI	CTAG	2 cut(s)	531, 641
BglI	GCCNNNNNGGC	1 cut(s)	202
BglII	AGATCT	1 cut(s)	123
BisI	GCNGC	2 cut(s)	567, 570
BlsI	GCNGC	2 cut(s)	568, 571
Bme1390I	CCNGG	1 cut(s)	473
Bme18I	GGWCC	1 cut(s)	66
BmeT110I	CYCGRG	1 cut(s)	617
BmgT120I	GGNCC	2 cut(s)	66, 194
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	473
BmsI	GCATC	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	358
Bpu14I	TTCGAA	1 cut(s)	382
BpuMI	CCSGG	1 cut(s)	473
BsaJI	CCNNGG	3 cut(s)	69, 302, 356
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 579
Bse1I	ACTGG	1 cut(s)	451
BseDI	CCNNGG	3 cut(s)	69, 302, 356
BseLI	CCNNNNNNNGG	2 cut(s)	434, 579
BseMII	CTCAG	2 cut(s)	76, 163
BseNI	ACTGG	1 cut(s)	451
BseSI	GKGCMC	1 cut(s)	207
BseYI	CCCAGC	1 cut(s)	504
BshFI	GGCC	3 cut(s)	196, 427, 583
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	1 cut(s)	472
BslI	CCNNNNNNNGG	2 cut(s)	434, 579
BsnI	GGCC	3 cut(s)	196, 427, 583
BsoBI	CYCGRG	1 cut(s)	617
Bsp119I	TTCGAA	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	5 cut(s)	123, 132, 533, 576, 683
Bsp19I	CCATGG	1 cut(s)	356
BspACI	CCGC	2 cut(s)	567, 570
BspANI	GGCC	3 cut(s)	196, 427, 583
BspCNI	CTCAG	2 cut(s)	75, 162
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	2 cut(s)	140, 678
BspT104I	TTCGAA	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	451
BssECI	CCNNGG	3 cut(s)	69, 302, 356
BssMI	GATC	5 cut(s)	123, 132, 533, 576, 683
BssNAI	GTATAC	2 cut(s)	41, 189
BssT1I	CCWWGG	3 cut(s)	69, 302, 356
Bst1107I	GTATAC	2 cut(s)	41, 189
Bst4CI	ACNGT	4 cut(s)	38, 262, 288, 697
BstBI	TTCGAA	1 cut(s)	382
BstC8I	GCNNGC	1 cut(s)	564
BstDEI	CTNAG	3 cut(s)	6, 62, 149
BstDSI	CCRYGG	1 cut(s)	356
BstKTI	GATC	5 cut(s)	126, 135, 536, 579, 686
BstMBI	GATC	5 cut(s)	123, 132, 533, 576, 683
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 202, 641
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	1 cut(s)	471
BstSLI	GKGCMC	1 cut(s)	207
BstV2I	GAAGAC	1 cut(s)	358
BstX2I	RGATCY	2 cut(s)	123, 683
BstXI	CCANNNNNNTGG	1 cut(s)	558
BstYI	RGATCY	2 cut(s)	123, 683
BstZ17I	GTATAC	2 cut(s)	41, 189
BsuRI	GGCC	3 cut(s)	196, 427, 583
BtgI	CCRYGG	1 cut(s)	356
BtsIMutI	CAGTG	2 cut(s)	543, 584
Cac8I	GCNNGC	1 cut(s)	564
Cfr13I	GGNCC	2 cut(s)	66, 194
Csp6I	GTAC	3 cut(s)	328, 637, 671
CviAII	CATG	7 cut(s)	322, 357, 414, 501, 558, 563, 574
CviQI	GTAC	3 cut(s)	328, 637, 671
DdeI	CTNAG	3 cut(s)	6, 62, 149
DpnI	GATC	5 cut(s)	125, 134, 535, 578, 685
DpnII	GATC	5 cut(s)	123, 132, 533, 576, 683
DrdI	GACNNNNNNGTC	1 cut(s)	595
DseDI	GACNNNNNNGTC	1 cut(s)	595
EaeI	YGGCCR	1 cut(s)	581
Eco130I	CCWWGG	3 cut(s)	69, 302, 356
Eco47I	GGWCC	1 cut(s)	66
Eco57I	CTGAAG	2 cut(s)	32, 545
Eco88I	CYCGRG	1 cut(s)	617
EcoT14I	CCWWGG	3 cut(s)	69, 302, 356
ErhI	CCWWGG	3 cut(s)	69, 302, 356
FaeI	CATG	7 cut(s)	325, 360, 417, 504, 561, 566, 577
FatI	CATG	7 cut(s)	321, 356, 413, 500, 557, 562, 573
FblI	GTMKAC	2 cut(s)	40, 188
Fnu4HI	GCNGC	2 cut(s)	567, 570
Fsp4HI	GCNGC	2 cut(s)	567, 570
FspBI	CTAG	2 cut(s)	531, 641
GluI	GCNGC	2 cut(s)	567, 570
GsaI	CCCAGC	1 cut(s)	508
HaeIII	GGCC	3 cut(s)	196, 427, 583
HapII	CCGG	1 cut(s)	472
Hin1II	CATG	7 cut(s)	325, 360, 417, 504, 561, 566, 577
HincII	GTYRAC	3 cut(s)	16, 291, 408
HindII	GTYRAC	3 cut(s)	16, 291, 408
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	1 cut(s)	554
HpaI	GTTAAC	1 cut(s)	291
HpaII	CCGG	1 cut(s)	472
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	7 cut(s)	16, 41, 189, 291, 408, 445, 600
Hpy188I	TCNGA	4 cut(s)	7, 152, 372, 525
Hpy188III	TCNNGA	2 cut(s)	64, 136
Hpy8I	GTNNAC	7 cut(s)	16, 41, 189, 291, 408, 445, 600
Hpy99I	CGWCG	1 cut(s)	610
HpyAV	CCTTC	5 cut(s)	241, 265, 341, 405, 520
HpyCH4III	ACNGT	4 cut(s)	38, 262, 288, 697
HpyCH4V	TGCA	3 cut(s)	266, 413, 466
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 202, 641
HpyF3I	CTNAG	3 cut(s)	6, 62, 149
Hsp92II	CATG	7 cut(s)	325, 360, 417, 504, 561, 566, 577
KspAI	GTTAAC	1 cut(s)	291
Kzo9I	GATC	5 cut(s)	123, 132, 533, 576, 683
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	2 cut(s)	531, 641
MalI	GATC	5 cut(s)	125, 134, 535, 578, 685
MboI	GATC	5 cut(s)	123, 132, 533, 576, 683
MboII	GAAGA	4 cut(s)	133, 165, 363, 641
MflI	RGATCY	2 cut(s)	123, 683
MhlI	GDGCHC	1 cut(s)	207
MlsI	TGGCCA	1 cut(s)	583
MluCI	AATT	3 cut(s)	75, 218, 510
MluNI	TGGCCA	1 cut(s)	583
MnlI	CCTC	3 cut(s)	13, 69, 221
Mox20I	TGGCCA	1 cut(s)	583
MscI	TGGCCA	1 cut(s)	583
MseI	TTAA	3 cut(s)	290, 519, 543
Msp20I	TGGCCA	1 cut(s)	583
MspI	CCGG	1 cut(s)	472
MspR9I	CCNGG	1 cut(s)	473
MwoI	GCNNNNNNNGC	3 cut(s)	80, 202, 641
NciI	CCSGG	1 cut(s)	473
NcoI	CCATGG	1 cut(s)	356
NdeII	GATC	5 cut(s)	123, 132, 533, 576, 683
NlaIII	CATG	7 cut(s)	325, 360, 417, 504, 561, 566, 577
NlaIV	GGNNCC	1 cut(s)	195
NspI	RCATGY	1 cut(s)	566
NspV	TTCGAA	1 cut(s)	382
PaeI	GCATGC	1 cut(s)	566
PfeI	GAWTC	1 cut(s)	554
PflMI	CCANNNNNTGG	1 cut(s)	579
PkrI	GCNGC	2 cut(s)	568, 571
PspFI	CCCAGC	1 cut(s)	504
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	2 cut(s)	66, 194
PsuI	RGATCY	2 cut(s)	123, 683
RsaI	GTAC	3 cut(s)	329, 638, 672
RsaNI	GTAC	3 cut(s)	328, 637, 671
SaqAI	TTAA	3 cut(s)	290, 519, 543
SatI	GCNGC	2 cut(s)	567, 570
Sau3AI	GATC	5 cut(s)	123, 132, 533, 576, 683
Sau96I	GGNCC	2 cut(s)	66, 194
ScrFI	CCNGG	1 cut(s)	473
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	6 cut(s)	144, 276, 315, 491, 642, 672
SfaNI	GCATC	1 cut(s)	159
SfuI	TTCGAA	1 cut(s)	382
SinI	GGWCC	1 cut(s)	66
SphI	GCATGC	1 cut(s)	566
Sse9I	AATT	3 cut(s)	75, 218, 510
SsiI	CCGC	2 cut(s)	567, 570
SspI	AATATT	1 cut(s)	234
SspMI	CTAG	2 cut(s)	531, 641
StyD4I	CCNGG	1 cut(s)	471
StyI	CCWWGG	3 cut(s)	69, 302, 356
TaaI	ACNGT	4 cut(s)	38, 262, 288, 697
TaqI	TCGA	1 cut(s)	382
TasI	AATT	3 cut(s)	75, 218, 510
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	2 cut(s)	569, 572
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	3 cut(s)	290, 519, 543
Tru9I	TTAA	3 cut(s)	290, 519, 543
TscAI	CASTG	2 cut(s)	543, 591
TspDTI	ATGAA	5 cut(s)	285, 310, 481, 489, 546
TspRI	CASTG	2 cut(s)	543, 591
Van91I	CCANNNNNTGG	1 cut(s)	579
VpaK11BI	GGWCC	1 cut(s)	66
XceI	RCATGY	1 cut(s)	566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125
XmiI	GTMKAC	2 cut(s)	40, 188
XspI	CTAG	2 cut(s)	531, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.