Rmu_sc0000215.1_g000003

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000215.1
N/A
Physical Location & Seq
Reverse (-)
33805 .. 34389
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000215.1_g000003.1.cds

Sequence Viewer

Length: 585 bp
atgaatgaagttgctaccattggaagaattcctcatgtaaacgtagtgcaactaattggctattgtgctgagggatcaaagcgtgctcctatatatgagtacatgagacttgataaacacatatttcctaaggaaggactcatttccttaagttgcaaggaagcatttgaagtttcactaggagtggcccgtggtattgattatctgcatcaaggatgtgatatgaaaattttgtatttcgatatcaagccacacaacattcttcttgacgagaagtttgtttcgaagatttcagacttcggtctggcaagattatgcccattagatgaaagcagtttaactttgaccgcagcaagaggaaccattggatacatagctctaaaattattttacaagaatattggaagtgtgtcgaacaaagctgatatctatagctttggaatgttgttgatggaaattgcagggaaaagaaggaatttaaatgcacttgcagcaaatacgagccaaatttactttccttcttgggtgtatgaccagttcaatgaagaaaaggaggtggaaattgaagatgccatgcacggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

194

Amino Acids

21.84

Weight (kDa)

5.96

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 348
AclWI GGATC 1 cut(s) 82
AcsI RAATTY 4 cut(s) 27, 228, 475, 507
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 134
AflII CTTAAG 1 cut(s) 148
AgsI TTSAA 3 cut(s) 170, 541, 566
AjuI GAANNNNNNNTTGG 2 cut(s) 498, 530
AluBI AGCT 3 cut(s) 377, 422, 435
AluI AGCT 3 cut(s) 377, 422, 435
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 1 cut(s) 82
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 2 cut(s) 350, 491
ApoI RAATTY 4 cut(s) 27, 228, 475, 507
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
AspS9I GGNCC 1 cut(s) 187
AsuII TTCGAA 1 cut(s) 284
AxyI CCTNAGG 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 88
BbvCI CCTCAGC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 362, 503
BccI CCATC 1 cut(s) 445
BciVI GTATCC 1 cut(s) 362
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 430
BfrI CTTAAG 1 cut(s) 148
BfuI GTATCC 1 cut(s) 362
BisI GCNGC 2 cut(s) 351, 492
BlsI GCNGC 2 cut(s) 352, 493
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 361
BmsI GCATC 2 cut(s) 217, 559
BoxI GACNNNNGTC 1 cut(s) 300
Bpu10I CCTNAGC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 190
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 535
Bse21I CCTNAGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 221
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 535
BseXI GCAGC 2 cut(s) 362, 503
BshFI GGCC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 100
BsnI GGCC 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 1 cut(s) 74
BspACI CCGC 1 cut(s) 348
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 361
BspPI GGATC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 284
BspTI CTTAAG 1 cut(s) 148
BsrI ACTGG 1 cut(s) 535
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 74
BstAFI CTTAAG 1 cut(s) 148
BstBI TTCGAA 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 69, 129
BstDSI CCRYGG 1 cut(s) 190
BstENI CCTNNNNNAGG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 221
BstKTI GATC 1 cut(s) 77
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 1 cut(s) 74
BstMWI GCNNNNNNNGC 1 cut(s) 491
BstPAI GACNNNNGTC 1 cut(s) 300
BstSFI CTRYAG 1 cut(s) 430
BstV1I GCAGC 2 cut(s) 362, 503
Bsu36I CCTNAGG 1 cut(s) 129
BsuI GTATCC 1 cut(s) 362
BsuRI GGCC 1 cut(s) 188
BtgI CCRYGG 1 cut(s) 190
BtsCI GGATG 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 100
CviAII CATG 3 cut(s) 35, 103, 574
CviJI RGCY 7 cut(s) 60, 188, 250, 377, 422, 435, 504
CviKI_1 RGCY 7 cut(s) 60, 188, 250, 377, 422, 435, 504
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 2 cut(s) 69, 129
DpnI GATC 1 cut(s) 76
DpnII GATC 1 cut(s) 74
DraI TTTAAA 1 cut(s) 480
Eco32I GATATC 2 cut(s) 244, 427
Eco81I CCTNAGG 1 cut(s) 129
EcoNI CCTNNNNNAGG 1 cut(s) 132
EcoRI GAATTC 1 cut(s) 27
EcoRV GATATC 2 cut(s) 244, 427
FaeI CATG 3 cut(s) 38, 106, 577
FatI CATG 3 cut(s) 34, 102, 573
Fnu4HI GCNGC 2 cut(s) 351, 492
FokI GGATG 1 cut(s) 228
Fsp4HI GCNGC 2 cut(s) 351, 492
FspBI CTAG 1 cut(s) 179
GluI GCNGC 2 cut(s) 351, 492
HaeIII GGCC 1 cut(s) 188
Hin1II CATG 3 cut(s) 38, 106, 577
HinfI GANTC 1 cut(s) 138
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 1 cut(s) 40
HpyAV CCTTC 3 cut(s) 128, 465, 528
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 7 cut(s) 49, 156, 208, 461, 485, 491, 577
HpyF10VI GCNNNNNNNGC 1 cut(s) 491
HpyF3I CTNAG 2 cut(s) 69, 129
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 3 cut(s) 38, 106, 577
Kzo9I GATC 1 cut(s) 74
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 3 cut(s) 290, 447, 548
Lsp1109I GCAGC 2 cut(s) 362, 503
LweI GCATC 2 cut(s) 217, 559
MaeI CTAG 1 cut(s) 179
MaeII ACGT 1 cut(s) 42
MalI GATC 1 cut(s) 76
MboI GATC 1 cut(s) 74
MboII GAAGA 5 cut(s) 36, 254, 298, 557, 578
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 8 cut(s) 27, 54, 228, 383, 456, 475, 507, 561
MlyI GAGTC 1 cut(s) 132
MnlI CCTC 4 cut(s) 42, 64, 350, 547
MseI TTAA 3 cut(s) 149, 338, 479
MspCI CTTAAG 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 491
NdeII GATC 1 cut(s) 74
NlaIII CATG 3 cut(s) 38, 106, 577
NlaIV GGNNCC 1 cut(s) 361
NspV TTCGAA 1 cut(s) 284
PkrI GCNGC 2 cut(s) 352, 493
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
PshAI GACNNNNGTC 1 cut(s) 300
PspN4I GGNNCC 1 cut(s) 361
PspPI GGNCC 1 cut(s) 187
PsrI GAACNNNNNNTAC 2 cut(s) 521, 553
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SaqAI TTAA 3 cut(s) 149, 338, 479
SatI GCNGC 2 cut(s) 351, 492
Sau3AI GATC 1 cut(s) 74
Sau96I GGNCC 1 cut(s) 187
SchI GAGTC 1 cut(s) 132
SduI GDGCHC 1 cut(s) 88
SetI ASST 5 cut(s) 45, 379, 424, 437, 558
SfaNI GCATC 2 cut(s) 217, 559
SfcI CTRYAG 1 cut(s) 430
SfuI TTCGAA 1 cut(s) 284
SmiI ATTTAAAT 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
Sse9I AATT 8 cut(s) 27, 54, 228, 383, 456, 475, 507, 561
SsiI CCGC 1 cut(s) 348
SspI AATATT 1 cut(s) 400
SspMI CTAG 1 cut(s) 179
SwaI ATTTAAAT 1 cut(s) 480
TaiI ACGT 1 cut(s) 45
TaqI TCGA 3 cut(s) 240, 284, 413
TaqII GACCGA 1 cut(s) 290
TasI AATT 8 cut(s) 27, 54, 228, 383, 456, 475, 507, 561
TatI WGTACW 1 cut(s) 99
Tru1I TTAA 3 cut(s) 149, 338, 479
Tru9I TTAA 3 cut(s) 149, 338, 479
TseI GCWGC 2 cut(s) 350, 491
TspDTI ATGAA 5 cut(s) 17, 21, 239, 342, 558
Vha464I CTTAAG 1 cut(s) 148
XagI CCTNNNNNAGG 1 cut(s) 132
XapI RAATTY 4 cut(s) 27, 228, 475, 507
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.