Rmu_sc0000220.1_g000011

Cancer-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000220.1
N/A
Physical Location & Seq
Forward (+)
77690 .. 78866
1177 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 612 bp
atgggttttcttaatctcaaagcggtggtcgattcagataaggaggaagaggaggatgagggtgaggttagacaaggaggtgagagagttgggttccaggtggtcacattagacggccgtactgctccgcttgcctcatccatcatttccagggtccagagtcctatccttagtggtccttcatgggaggtggatctacaaatttttctttgcccatcaatctctagtgggagacctattcttcattccaactgtttccaggtcttctcattcattcatttagttccagttaaggctcaatgcatcaatattgctatatatttcagccctgaatctttgagatggtccaatgtggggaagtacaaagtagatgttgcgtcgtttgagtccttggcaattcctgaattgcaggtgggatattgttttgcactgctaattgttaaacatgtaagagaagatactgacctatttatcatcgatgaagtcggtaagatggagttgttcggttcatctttcttccctgctgtcttaagagtgctggaatccaatgttccagttttggcgtcagttccaattccaaaagttggctgcgatatactagcaggtacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00730 ko01100 map00230 map00730 map01100
Pfam Domains
Protein Families
NTPase_1

Protein Analysis

203

Amino Acids

22.24

Weight (kDa)

4.8

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTPase_1 PF03266 115 - 192 5.1e-12 NTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 400
Acc36I ACCTGC 2 cut(s) 400, 593
AccB7I CCANNNNNTGG 1 cut(s) 584
AciI CCGC 2 cut(s) 23, 128
AclWI GGATC 1 cut(s) 201
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 1 cut(s) 201
AcyI GRCGYC 1 cut(s) 563
AfaI GTAC 3 cut(s) 121, 362, 607
AfiI CCNNNNNNNGG 2 cut(s) 354, 584
AflII CTTAAG 1 cut(s) 529
AflIII ACRYGT 1 cut(s) 445
AjnI CCWGG 3 cut(s) 96, 149, 258
Alw26I GTCTC 1 cut(s) 226
AlwI GGATC 1 cut(s) 201
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 588
ApoI RAATTY 1 cut(s) 201
ArsI GACNNNNNNTTYG 2 cut(s) 12, 44
AspS9I GGNCC 3 cut(s) 154, 176, 345
AsuHPI GGTGA 2 cut(s) 74, 92
AvaII GGWCC 3 cut(s) 154, 176, 345
BbsI GAAGAC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 575
BccI CCATC 4 cut(s) 149, 223, 336, 487
BceAI ACGGC 2 cut(s) 102, 130
BciT130I CCWGG 3 cut(s) 98, 151, 260
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 2 cut(s) 225, 599
BfrI CTTAAG 1 cut(s) 529
BfuAI ACCTGC 2 cut(s) 400, 593
BisI GCNGC 1 cut(s) 589
BlsI GCNGC 1 cut(s) 590
Bme1390I CCNGG 3 cut(s) 98, 151, 260
Bme18I GGWCC 3 cut(s) 154, 176, 345
BmgT120I GGNCC 3 cut(s) 154, 176, 345
BmiI GGNNCC 2 cut(s) 95, 155
BmrFI CCNGG 3 cut(s) 98, 151, 260
BmsI GCATC 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 256
Bsa29I ATCGAT 1 cut(s) 477
BsaHI GRCGYC 1 cut(s) 563
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 150, 390
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 584
Bse1I ACTGG 2 cut(s) 287, 554
BseBI CCWGG 3 cut(s) 98, 151, 260
BseCI ATCGAT 1 cut(s) 477
BseDI CCNNGG 2 cut(s) 150, 390
BseGI GGATG 2 cut(s) 61, 137
BseLI CCNNNNNNNGG 2 cut(s) 354, 584
BseNI ACTGG 2 cut(s) 287, 554
BseRI GAGGAG 1 cut(s) 65
BseX3I CGGCCG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 575
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 1 cut(s) 117
BshVI ATCGAT 1 cut(s) 477
BsiEI CGRYCG 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 354, 584
BsmAI GTCTC 1 cut(s) 226
BsnI GGCC 1 cut(s) 117
Bso31I GGTCTC 1 cut(s) 226
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 2 cut(s) 23, 128
BspANI GGCC 1 cut(s) 117
BspDI ATCGAT 1 cut(s) 477
BspLI GGNNCC 2 cut(s) 95, 155
BspMI ACCTGC 2 cut(s) 400, 593
BspPI GGATC 1 cut(s) 201
BspTI CTTAAG 1 cut(s) 529
BspTNI GGTCTC 1 cut(s) 226
BsrI ACTGG 2 cut(s) 287, 554
BssECI CCNNGG 2 cut(s) 150, 390
BssMI GATC 1 cut(s) 193
BssNI GRCGYC 1 cut(s) 563
BssT1I CCWWGG 1 cut(s) 390
Bst2UI CCWGG 3 cut(s) 98, 151, 260
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 42
BstACI GRCGYC 1 cut(s) 563
BstAFI CTTAAG 1 cut(s) 529
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 170
BstF5I GGATG 2 cut(s) 61, 137
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 1 cut(s) 193
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 3 cut(s) 98, 151, 260
BstNSI RCATGY 1 cut(s) 449
BstSCI CCNGG 3 cut(s) 96, 149, 258
BstV1I GCAGC 1 cut(s) 575
BstV2I GAAGAC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BstZI CGGCCG 1 cut(s) 115
Bsu15I ATCGAT 1 cut(s) 477
BsuRI GGCC 1 cut(s) 117
BsuTUI ATCGAT 1 cut(s) 477
BtsCI GGATG 2 cut(s) 61, 137
BtsI GCAGTG 1 cut(s) 428
BtsIMutI CAGTG 1 cut(s) 428
BveI ACCTGC 2 cut(s) 400, 593
Cac8I GCNNGC 1 cut(s) 132
Cfr13I GGNCC 3 cut(s) 154, 176, 345
ClaI ATCGAT 1 cut(s) 477
CseI GACGC 2 cut(s) 366, 552
Csp6I GTAC 3 cut(s) 120, 361, 606
CviAII CATG 2 cut(s) 183, 446
CviJI RGCY 4 cut(s) 117, 296, 327, 588
CviKI_1 RGCY 4 cut(s) 117, 296, 327, 588
CviQI GTAC 3 cut(s) 120, 361, 606
DdeI CTNAG 1 cut(s) 170
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 115
EagI CGGCCG 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
EclXI CGGCCG 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 390
Eco31I GGTCTC 1 cut(s) 226
Eco47I GGWCC 3 cut(s) 154, 176, 345
Eco52I CGGCCG 1 cut(s) 115
EcoRII CCWGG 3 cut(s) 96, 149, 258
EcoT14I CCWWGG 1 cut(s) 390
EcoT22I ATGCAT 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 2 cut(s) 186, 449
FaiI YATR 6 cut(s) 184, 317, 319, 447, 596, 610
FatI CATG 2 cut(s) 182, 445
Fnu4HI GCNGC 1 cut(s) 589
FokI GGATG 2 cut(s) 68, 124
Fsp4HI GCNGC 1 cut(s) 589
FspBI CTAG 2 cut(s) 225, 599
GluI GCNGC 1 cut(s) 589
HaeIII GGCC 1 cut(s) 117
HgaI GACGC 2 cut(s) 366, 552
Hin1I GRCGYC 1 cut(s) 563
Hin1II CATG 2 cut(s) 186, 449
HinfI GANTC 5 cut(s) 32, 160, 332, 386, 542
HphI GGTGA 2 cut(s) 74, 92
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 2 cut(s) 157, 401
Hpy99I CGWCG 1 cut(s) 382
HpyAV CCTTC 1 cut(s) 189
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4V TGCA 3 cut(s) 303, 409, 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 170
Hsp92I GRCGYC 1 cut(s) 563
Hsp92II CATG 2 cut(s) 186, 449
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 1 cut(s) 130
Lsp1109I GCAGC 1 cut(s) 575
LweI GCATC 1 cut(s) 312
MaeI CTAG 2 cut(s) 225, 599
MaeIII GTNAC 1 cut(s) 103
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 5 cut(s) 59, 233, 256, 467, 508
MflI RGATCY 1 cut(s) 193
MluCI AATT 5 cut(s) 201, 396, 404, 435, 573
MlyI GAGTC 2 cut(s) 169, 395
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 8 cut(s) 37, 43, 46, 52, 58, 71, 145, 181
Mph1103I ATGCAT 1 cut(s) 305
MseI TTAA 4 cut(s) 12, 291, 441, 530
MspCI CTTAAG 1 cut(s) 529
MspR9I CCNGG 3 cut(s) 98, 151, 260
MvaI CCWGG 3 cut(s) 98, 151, 260
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 1 cut(s) 193
NlaIII CATG 2 cut(s) 186, 449
NlaIV GGNNCC 2 cut(s) 95, 155
NmuCI GTSAC 1 cut(s) 103
NsiI ATGCAT 1 cut(s) 305
NspI RCATGY 1 cut(s) 449
PaqCI CACCTGC 1 cut(s) 400
PciI ACATGT 1 cut(s) 445
PfeI GAWTC 3 cut(s) 32, 332, 542
PflMI CCANNNNNTGG 1 cut(s) 584
PkrI GCNGC 1 cut(s) 590
PleI GAGTC 2 cut(s) 168, 394
PpsI GAGTC 2 cut(s) 168, 394
PscI ACATGT 1 cut(s) 445
Psp6I CCWGG 3 cut(s) 96, 149, 258
PspGI CCWGG 3 cut(s) 96, 149, 258
PspN4I GGNNCC 2 cut(s) 95, 155
PspPI GGNCC 3 cut(s) 154, 176, 345
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 3 cut(s) 121, 362, 607
RsaNI GTAC 3 cut(s) 120, 361, 606
SaqAI TTAA 4 cut(s) 12, 291, 441, 530
SatI GCNGC 1 cut(s) 589
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 3 cut(s) 154, 176, 345
SchI GAGTC 2 cut(s) 169, 395
ScrFI CCNGG 3 cut(s) 98, 151, 260
SetI ASST 9 cut(s) 69, 82, 102, 192, 238, 264, 414, 468, 607
SfaNI GCATC 1 cut(s) 312
SinI GGWCC 3 cut(s) 154, 176, 345
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 5 cut(s) 201, 396, 404, 435, 573
SsiI CCGC 2 cut(s) 23, 128
SspI AATATT 1 cut(s) 310
SspMI CTAG 2 cut(s) 225, 599
StyD4I CCNGG 3 cut(s) 96, 149, 258
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 1 cut(s) 254
TaqI TCGA 2 cut(s) 30, 477
TasI AATT 5 cut(s) 201, 396, 404, 435, 573
TatI WGTACW 1 cut(s) 360
TfiI GAWTC 3 cut(s) 32, 332, 542
Tru1I TTAA 4 cut(s) 12, 291, 441, 530
Tru9I TTAA 4 cut(s) 12, 291, 441, 530
TscAI CASTG 1 cut(s) 435
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 1 cut(s) 588
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 6 cut(s) 171, 233, 262, 266, 495, 498
TspRI CASTG 1 cut(s) 435
Van91I CCANNNNNTGG 1 cut(s) 584
Vha464I CTTAAG 1 cut(s) 529
VpaK11BI GGWCC 3 cut(s) 154, 176, 345
XapI RAATTY 1 cut(s) 201
XceI RCATGY 1 cut(s) 449
XspI CTAG 2 cut(s) 225, 599
Zsp2I ATGCAT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.