Rmu_sc0000221.1_g000006

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000221.1
N/A
Physical Location & Seq
Reverse (-)
25156 .. 25656
501 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 501 bp
ctgccaccattaccccccaaagatgatgaactatctaataaggtgaaagcagatgccttactgtttctgaggcgacatatttatcctagcctacactgggagtaccttcagttgaagacacctagagaactgtgggatgcccttaagggacgttttgggaacattcatgacattttgctcccagaactggtcgttcaatggaatgtaatccgcttgcttgactacaaaagggtcaatgacttcaacaaggacatgttgcgccttaaggcatgtctcaatttctgtggaagggaaatcacaaaagatgatatgatctacaagactcttactacctttcctacttcagcatttataatagcaaaccagtataagttggagtatgacaataaaagaatcacaactttcaataagttaataagcctactgcaagtggctgagagacataatgagattctcttgaacaacaacgtcaggcccactgggacaaaaaaaaattcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

166

Amino Acids

19.58

Weight (kDa)

9.44

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 353
AciI CCGC 1 cut(s) 211
AcsI RAATTY 1 cut(s) 493
AcuI CTGAAG 2 cut(s) 92, 327
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 2 cut(s) 97, 187
AflII CTTAAG 2 cut(s) 143, 263
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 5 cut(s) 115, 197, 244, 406, 460
Alw26I GTCTC 2 cut(s) 278, 433
AoxI GGCC 1 cut(s) 473
ApoI RAATTY 1 cut(s) 493
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 474
AsuHPI GGTGA 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 122
BcoDI GTCTC 2 cut(s) 278, 433
BfaI CTAG 2 cut(s) 87, 123
BfrI CTTAAG 2 cut(s) 143, 263
BmgT120I GGNCC 1 cut(s) 474
BmrI ACTGGG 2 cut(s) 106, 489
BmsI GCATC 2 cut(s) 43, 127
BmuI ACTGGG 2 cut(s) 106, 489
BpiI GAAGAC 1 cut(s) 122
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 187
Bse1I ACTGG 4 cut(s) 101, 192, 364, 484
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 97, 187
BseMII CTCAG 2 cut(s) 59, 426
BseNI ACTGG 4 cut(s) 101, 192, 364, 484
BshFI GGCC 1 cut(s) 475
BslFI GGGAC 2 cut(s) 162, 496
BslI CCNNNNNNNGG 2 cut(s) 97, 187
BsmAI GTCTC 2 cut(s) 278, 433
BsmFI GGGAC 2 cut(s) 162, 496
BsnI GGCC 1 cut(s) 475
Bsp143I GATC 1 cut(s) 312
BspACI CCGC 1 cut(s) 211
BspANI GGCC 1 cut(s) 475
BspCNI CTCAG 2 cut(s) 60, 427
BspHI TCATGA 1 cut(s) 166
BspTI CTTAAG 2 cut(s) 143, 263
BsrI ACTGG 4 cut(s) 101, 192, 364, 484
BssMI GATC 1 cut(s) 312
Bst4CI ACNGT 2 cut(s) 63, 132
BstAFI CTTAAG 2 cut(s) 143, 263
BstC8I GCNNGC 1 cut(s) 215
BstDEI CTNAG 2 cut(s) 68, 435
BstF5I GGATG 1 cut(s) 142
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 1 cut(s) 315
BstMAI GTCTC 2 cut(s) 278, 433
BstMBI GATC 1 cut(s) 312
BstNSI RCATGY 2 cut(s) 256, 273
BstV2I GAAGAC 1 cut(s) 122
BsuRI GGCC 1 cut(s) 475
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 2 cut(s) 94, 477
Cac8I GCNNGC 1 cut(s) 215
CciI TCATGA 1 cut(s) 166
CfoI GCGC 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 474
Csp6I GTAC 1 cut(s) 103
CspCI CAANNNNNGTGG 2 cut(s) 265, 300
CviAII CATG 3 cut(s) 167, 253, 270
CviJI RGCY 4 cut(s) 90, 420, 434, 475
CviKI_1 RGCY 4 cut(s) 90, 420, 434, 475
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 68, 435
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
Eco57I CTGAAG 2 cut(s) 92, 327
FaeI CATG 3 cut(s) 170, 256, 273
FaiI YATR 9 cut(s) 78, 168, 254, 271, 311, 353, 369, 381, 444
FaqI GGGAC 2 cut(s) 162, 496
FatI CATG 3 cut(s) 166, 252, 269
FokI GGATG 1 cut(s) 149
FspBI CTAG 2 cut(s) 87, 123
GlaI GCGC 1 cut(s) 260
HaeIII GGCC 1 cut(s) 475
HhaI GCGC 1 cut(s) 261
Hin1II CATG 3 cut(s) 170, 256, 273
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HinfI GANTC 3 cut(s) 322, 393, 451
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 3 cut(s) 167, 457, 498
HpyAV CCTTC 2 cut(s) 116, 282
HpyCH4III ACNGT 2 cut(s) 63, 132
HpyCH4IV ACGT 2 cut(s) 151, 468
HpyCH4V TGCA 1 cut(s) 427
HpyF3I CTNAG 2 cut(s) 68, 435
HpySE526I ACGT 2 cut(s) 151, 468
Hsp92II CATG 3 cut(s) 170, 256, 273
HspAI GCGC 1 cut(s) 259
Kzo9I GATC 1 cut(s) 312
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 6 cut(s) 82, 173, 195, 377, 457, 465
LweI GCATC 2 cut(s) 43, 127
MaeI CTAG 2 cut(s) 87, 123
MaeII ACGT 2 cut(s) 151, 468
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 1 cut(s) 127
MluCI AATT 2 cut(s) 277, 493
MlyI GAGTC 1 cut(s) 316
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 1 cut(s) 63
MseI TTAA 3 cut(s) 144, 264, 413
MspCI CTTAAG 2 cut(s) 143, 263
NdeII GATC 1 cut(s) 312
NlaIII CATG 3 cut(s) 170, 256, 273
NspI RCATGY 2 cut(s) 256, 273
PagI TCATGA 1 cut(s) 166
PciI ACATGT 1 cut(s) 252
PfeI GAWTC 2 cut(s) 393, 451
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
PscI ACATGT 1 cut(s) 252
PsiI TTATAA 1 cut(s) 353
PspPI GGNCC 1 cut(s) 474
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SaqAI TTAA 3 cut(s) 144, 264, 413
Sau3AI GATC 1 cut(s) 312
Sau96I GGNCC 1 cut(s) 474
SchI GAGTC 1 cut(s) 316
SetI ASST 6 cut(s) 45, 108, 124, 154, 335, 471
SfaNI GCATC 2 cut(s) 43, 127
SmlI CTYRAG 2 cut(s) 143, 263
SmoI CTYRAG 2 cut(s) 143, 263
Sse9I AATT 2 cut(s) 277, 493
SsiI CCGC 1 cut(s) 211
SspMI CTAG 2 cut(s) 87, 123
TaaI ACNGT 2 cut(s) 63, 132
TaiI ACGT 2 cut(s) 154, 471
TasI AATT 2 cut(s) 277, 493
TfiI GAWTC 2 cut(s) 393, 451
Tru1I TTAA 3 cut(s) 144, 264, 413
Tru9I TTAA 3 cut(s) 144, 264, 413
TscAI CASTG 2 cut(s) 101, 484
TspDTI ATGAA 2 cut(s) 42, 155
TspRI CASTG 2 cut(s) 101, 484
Vha464I CTTAAG 2 cut(s) 143, 263
XapI RAATTY 1 cut(s) 493
XceI RCATGY 2 cut(s) 256, 273
XspI CTAG 2 cut(s) 87, 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.