Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000227.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

25332 .. 29355

Gene Structure 4024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

atggaatacgattcccagtccccaaagtttgctctgcacgtggactctgatcacaaggcaacagagttcagaatcttctccatagacaaacctcacatgcgagcttttcacttggcctggttctcatacttctcatgcttcctcaccacttttgccgcagcacctctactccccataatccgggacaacctcaacctcacgaccaccgacatcggcaaagccggaatcgcttcggtctccggcgcagtctttgcccgtatagccatgggaaatctttccgacttattcggaccgcgcctcgcctctgcctcactcctactcctcactgcaccagctgtcttcttgttctcaatggcctcgtcccccttttcttttctcttcttgcgtttttgcgtcggtatctctttggccaactttgttccaactttgttctggatgagctctatgttttcgcctccggtggtcggcacagcaaatggctttgcacgaggttgggggaacttcggtggtggagcgacacagctgatcatgccacttgtgtttggcttcattcaacataacgttggtgctgccaagttcactgcttggcgaatagcgtttcaaatccctgccgtgtttcagatgctctccgcaattgcaatcttgcttttcgggcaggacatgacggacgctgagtacttttacgacagattcaatctcaagcttcacactgcagggatgatagcggcgactttcgggttggccaatattgtttctagaccgacaggaggggtcttatcggatttgatggcgaggaggtttgggatgagggggaggctgtggactttgtgggtggtgcaaactttggggggtgtgttctgtgtgattcttggaagagttggttctttgaaggcttccattggtgtcatgattttgttctccttgtgttgccaaagtgcttgtgggcttacatttggagtggttccttttgtttccagaagattcaatctcaagcttcacactgcagggatgatagcggcgactttcgggttggccaatattgtttctagaccgacaggaggggtcttatcggatttgatggcgaggaggtttgggatgagggggaggctgtggactttgtgggtggtgcaaactttggggggtgtgttctgtgtgattcttggaagagttggttctttgaaggcttccattgaagtggagaagccgagaatggcagagctgcaggagtttagaggaggaggaggagactccggagagactgagagacgaactggagaatcgagaagtcgaagtcgagtgattggagtgaactggagtcggactcgggagtgggttaaggaattaggacggcctggacaggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0009705 GO:0009987 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:0071944 GO:0098588 GO:0098656 GO:0098805 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

MFS_1

Protein Analysis

454

Amino Acids

49.53

Weight (kDa)

10.37

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	40 - 219	1.2e-14	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	295
AccIII	TCCGGA	1 cut(s)	1250
AciI	CCGC	5 cut(s)	156, 293, 630, 725, 1016
AclI	AACGTT	1 cut(s)	561
AcoI	YGGCCR	3 cut(s)	408, 741, 1032
AcvI	CACGTG	1 cut(s)	40
AfaI	GTAC	1 cut(s)	677
AfiI	CCNNNNNNNGG	4 cut(s)	180, 464, 767, 1058
AgsI	TTSAA	7 cut(s)	554, 602, 694, 889, 985, 1180, 1193
AjnI	CCWGG	2 cut(s)	116, 1351
AluBI	AGCT	7 cut(s)	104, 335, 441, 523, 703, 994, 1219
AluI	AGCT	7 cut(s)	104, 335, 441, 523, 703, 994, 1219
Alw21I	GWGCWC	1 cut(s)	443
Alw26I	GTCTC	4 cut(s)	241, 1239, 1250, 1258
Ama87I	CYCGRG	1 cut(s)	1323
Aor13HI	TCCGGA	1 cut(s)	1250
AoxI	GGCC	6 cut(s)	114, 354, 408, 741, 1032, 1349
ApeKI	GCWGC	3 cut(s)	158, 569, 1219
Asp700I	GAANNNNTTC	2 cut(s)	229, 274
AspLEI	GCGC	2 cut(s)	245, 297
AspS9I	GGNCC	1 cut(s)	290
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	136
AvaI	CYCGRG	1 cut(s)	1323
AvaII	GGWCC	1 cut(s)	290
BalI	TGGCCA	3 cut(s)	410, 743, 1034
BanII	GRGCYC	1 cut(s)	443
BauI	CACGAG	1 cut(s)	486
BbrPI	CACGTG	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	443
BbvI	GCAGC	3 cut(s)	170, 556, 1206
BccI	CCATC	2 cut(s)	781, 1072
BceAI	ACGGC	1 cut(s)	596
BciT130I	CCWGG	2 cut(s)	118, 1353
BclI	TGATCA	2 cut(s)	49, 525
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	4 cut(s)	241, 1239, 1250, 1258
BfaI	CTAG	2 cut(s)	756, 1047
BfmI	CTRYAG	3 cut(s)	711, 1002, 1220
BisI	GCNGC	6 cut(s)	156, 159, 570, 726, 1017, 1220
BlsI	GCNGC	6 cut(s)	157, 160, 571, 727, 1018, 1221
BmcAI	AGTACT	1 cut(s)	677
Bme1390I	CCNGG	3 cut(s)	118, 182, 1353
Bme18I	GGWCC	1 cut(s)	290
BmeT110I	CYCGRG	1 cut(s)	1323
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	963
BmrFI	CCNGG	3 cut(s)	118, 182, 1353
BmrI	ACTGGG	1 cut(s)	10
BmsI	GCATC	1 cut(s)	612
BmuI	ACTGGG	1 cut(s)	10
BpiI	GAAGAC	1 cut(s)	331
BplI	GAGNNNNNCTC	2 cut(s)	1306, 1338
BpmI	CTGGAG	2 cut(s)	1293, 1333
BpuEI	CTTGAG	2 cut(s)	683, 974
BpuMI	CCSGG	1 cut(s)	182
BsaAI	YACGTR	1 cut(s)	40
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	2 cut(s)	457, 1250
BsaXI	ACNNNNNCTCC	4 cut(s)	153, 183, 303, 333
Bsc4I	CCNNNNNNNGG	4 cut(s)	180, 464, 767, 1058
Bse1I	ACTGG	3 cut(s)	16, 1276, 1316
BseAI	TCCGGA	1 cut(s)	1250
BseBI	CCWGG	2 cut(s)	118, 1353
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	5 cut(s)	441, 723, 810, 1014, 1101
BseLI	CCNNNNNNNGG	4 cut(s)	180, 464, 767, 1058
BseMII	CTCAG	2 cut(s)	663, 1251
BseNI	ACTGG	3 cut(s)	16, 1276, 1316
BseRI	GAGGAG	7 cut(s)	311, 808, 1099, 1248, 1251, 1254, 1257
BseXI	GCAGC	3 cut(s)	170, 556, 1206
BsgI	GTGCAG	2 cut(s)	20, 312
Bsh1236I	CGCG	1 cut(s)	295
BshFI	GGCC	6 cut(s)	116, 356, 410, 743, 1034, 1351
BsiHKAI	GWGCWC	1 cut(s)	443
BsiHKCI	CYCGRG	1 cut(s)	1323
BsiSI	CCGG	5 cut(s)	181, 222, 240, 458, 1251
BslFI	GGGAC	3 cut(s)	4, 197, 346
BslI	CCNNNNNNNGG	4 cut(s)	180, 464, 767, 1058
BsmAI	GTCTC	4 cut(s)	241, 1239, 1250, 1258
BsmBI	CGTCTC	1 cut(s)	1258
BsmFI	GGGAC	3 cut(s)	4, 197, 346
BsnI	GGCC	6 cut(s)	116, 356, 410, 743, 1034, 1351
Bso31I	GGTCTC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	1323
Bsp1286I	GDGCHC	1 cut(s)	443
Bsp13I	TCCGGA	1 cut(s)	1250
Bsp143I	GATC	2 cut(s)	49, 525
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	5 cut(s)	156, 293, 630, 725, 1016
BspANI	GGCC	6 cut(s)	116, 356, 410, 743, 1034, 1351
BspCNI	CTCAG	2 cut(s)	664, 1252
BspEI	TCCGGA	1 cut(s)	1250
BspFNI	CGCG	1 cut(s)	295
BspHI	TCATGA	1 cut(s)	906
BspLI	GGNNCC	1 cut(s)	963
BspMAI	CTGCAG	3 cut(s)	715, 1006, 1224
BspTNI	GGTCTC	1 cut(s)	241
BsrI	ACTGG	3 cut(s)	16, 1276, 1316
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	2 cut(s)	49, 525
BssSI	CACGAG	1 cut(s)	486
BssT1I	CCWWGG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	486
Bst2UI	CCWGG	2 cut(s)	118, 1353
Bst6I	CTCTTC	3 cut(s)	383, 868, 1159
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstBAI	YACGTR	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	672, 1260
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	5 cut(s)	441, 723, 810, 1014, 1101
BstFNI	CGCG	1 cut(s)	295
BstHHI	GCGC	2 cut(s)	245, 297
BstKTI	GATC	2 cut(s)	52, 528
BstMAI	GTCTC	4 cut(s)	241, 1239, 1250, 1258
BstMBI	GATC	2 cut(s)	49, 525
BstMWI	GCNNNNNNNGC	5 cut(s)	227, 251, 260, 529, 652
BstNI	CCWGG	2 cut(s)	118, 1353
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	3 cut(s)	116, 180, 1351
BstSFI	CTRYAG	3 cut(s)	711, 1002, 1220
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	3 cut(s)	170, 556, 1206
BstV2I	GAAGAC	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	1195
BsuRI	GGCC	6 cut(s)	116, 356, 410, 743, 1034, 1351
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	5 cut(s)	441, 723, 810, 1014, 1101
BtsI	GCAGTG	4 cut(s)	324, 579, 708, 999
BtsIMutI	CAGTG	4 cut(s)	324, 579, 708, 999
Cac8I	GCNNGC	1 cut(s)	102
CciI	TCATGA	1 cut(s)	906
CfoI	GCGC	2 cut(s)	245, 297
Cfr13I	GGNCC	1 cut(s)	290
CpoI	CGGWCCG	1 cut(s)	290
CseI	GACGC	2 cut(s)	382, 677
Csp6I	GTAC	1 cut(s)	676
CspI	CGGWCCG	1 cut(s)	290
CviAII	CATG	6 cut(s)	97, 135, 265, 529, 661, 907
CviQI	GTAC	1 cut(s)	676
DdeI	CTNAG	2 cut(s)	672, 1260
DpnI	GATC	2 cut(s)	51, 527
DpnII	GATC	2 cut(s)	49, 525
EaeI	YGGCCR	3 cut(s)	408, 741, 1032
Eam1104I	CTCTTC	3 cut(s)	383, 868, 1159
EarI	CTCTTC	3 cut(s)	383, 868, 1159
Ecl136II	GAGCTC	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	443
Eco31I	GGTCTC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	441
Eco72I	CACGTG	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	1323
EcoICRI	GAGCTC	1 cut(s)	441
EcoRII	CCWGG	2 cut(s)	116, 1351
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	443
ErhI	CCWWGG	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	1258
FaeI	CATG	6 cut(s)	100, 138, 268, 532, 664, 910
FaqI	GGGAC	3 cut(s)	4, 197, 346
FatI	CATG	6 cut(s)	96, 134, 264, 528, 660, 906
FbaI	TGATCA	2 cut(s)	49, 525
Fnu4HI	GCNGC	6 cut(s)	156, 159, 570, 726, 1017, 1220
FokI	GGATG	5 cut(s)	448, 730, 817, 1021, 1108
FriOI	GRGCYC	1 cut(s)	443
Fsp4HI	GCNGC	6 cut(s)	156, 159, 570, 726, 1017, 1220
FspBI	CTAG	2 cut(s)	756, 1047
GlaI	GCGC	2 cut(s)	244, 296
GluI	GCNGC	6 cut(s)	156, 159, 570, 726, 1017, 1220
GsuI	CTGGAG	2 cut(s)	1293, 1333
HaeIII	GGCC	6 cut(s)	116, 356, 410, 743, 1034, 1351
HapII	CCGG	5 cut(s)	181, 222, 240, 458, 1251
HgaI	GACGC	2 cut(s)	382, 677
HhaI	GCGC	2 cut(s)	245, 297
Hin1II	CATG	6 cut(s)	100, 138, 268, 532, 664, 910
Hin6I	GCGC	2 cut(s)	243, 295
HinP1I	GCGC	2 cut(s)	243, 295
HindIII	AAGCTT	2 cut(s)	701, 992
HpaII	CCGG	5 cut(s)	181, 222, 240, 458, 1251
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	5 cut(s)	43, 579, 822, 1113, 1309
Hpy188I	TCNGA	8 cut(s)	49, 71, 280, 290, 621, 781, 1072, 1320
Hpy188III	TCNNGA	9 cut(s)	199, 433, 756, 907, 975, 1047, 1251, 1281, 1325
Hpy8I	GTNNAC	5 cut(s)	43, 579, 822, 1113, 1309
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	2 cut(s)	883, 1174
HpyCH4IV	ACGT	2 cut(s)	39, 561
HpyCH4V	TGCA	9 cut(s)	37, 329, 485, 638, 713, 838, 1004, 1129, 1222
HpyF10VI	GCNNNNNNNGC	5 cut(s)	227, 251, 260, 529, 652
HpyF3I	CTNAG	2 cut(s)	672, 1260
HpySE526I	ACGT	2 cut(s)	39, 561
Hsp92II	CATG	6 cut(s)	100, 138, 268, 532, 664, 910
HspAI	GCGC	2 cut(s)	243, 295
Kpn2I	TCCGGA	1 cut(s)	1250
Ksp22I	TGATCA	2 cut(s)	49, 525
Kzo9I	GATC	2 cut(s)	49, 525
LmnI	GCTCC	1 cut(s)	512
Lsp1109I	GCAGC	3 cut(s)	170, 556, 1206
LweI	GCATC	1 cut(s)	612
MaeI	CTAG	2 cut(s)	756, 1047
MaeII	ACGT	2 cut(s)	39, 561
MalI	GATC	2 cut(s)	51, 527
MboI	GATC	2 cut(s)	49, 525
MboII	GAAGA	6 cut(s)	67, 331, 370, 885, 990, 1176
MfeI	CAATTG	1 cut(s)	633
MhlI	GDGCHC	1 cut(s)	443
MlsI	TGGCCA	3 cut(s)	410, 743, 1034
MluCI	AATT	2 cut(s)	633, 1340
MluNI	TGGCCA	3 cut(s)	410, 743, 1034
MlyI	GAGTC	4 cut(s)	38, 1241, 1315, 1324
MmeI	TCCRAC	3 cut(s)	303, 446, 1298
Mox20I	TGGCCA	3 cut(s)	410, 743, 1034
MroI	TCCGGA	1 cut(s)	1250
MroXI	GAANNNNTTC	2 cut(s)	229, 274
MscI	TGGCCA	3 cut(s)	410, 743, 1034
MseI	TTAA	1 cut(s)	1335
MslI	CAYNNNNRTG	1 cut(s)	1193
Msp20I	TGGCCA	3 cut(s)	410, 743, 1034
MspA1I	CMGCKG	2 cut(s)	335, 523
MspI	CCGG	5 cut(s)	181, 222, 240, 458, 1251
MspR9I	CCNGG	3 cut(s)	118, 182, 1353
MunI	CAATTG	1 cut(s)	633
MvaI	CCWGG	2 cut(s)	118, 1353
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	5 cut(s)	227, 251, 260, 529, 652
NciI	CCSGG	1 cut(s)	182
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	2 cut(s)	49, 525
NlaIII	CATG	6 cut(s)	100, 138, 268, 532, 664, 910
NlaIV	GGNNCC	1 cut(s)	963
NmeAIII	GCCGAG	1 cut(s)	1230
NspI	RCATGY	1 cut(s)	100
PagI	TCATGA	1 cut(s)	906
PdmI	GAANNNNTTC	2 cut(s)	229, 274
PfeI	GAWTC	8 cut(s)	11, 72, 225, 690, 865, 981, 1156, 1277
PfoI	TCCNGGA	1 cut(s)	180
PkrI	GCNGC	6 cut(s)	157, 160, 571, 727, 1018, 1221
PleI	GAGTC	4 cut(s)	38, 1241, 1315, 1323
PmaCI	CACGTG	1 cut(s)	40
PmlI	CACGTG	1 cut(s)	40
PpsI	GAGTC	4 cut(s)	38, 1241, 1315, 1323
Ppu21I	YACGTR	1 cut(s)	40
Psp124BI	GAGCTC	1 cut(s)	443
Psp1406I	AACGTT	1 cut(s)	561
Psp6I	CCWGG	2 cut(s)	116, 1351
PspCI	CACGTG	1 cut(s)	40
PspGI	CCWGG	2 cut(s)	116, 1351
PspN4I	GGNNCC	1 cut(s)	963
PspPI	GGNCC	1 cut(s)	290
PstI	CTGCAG	3 cut(s)	715, 1006, 1224
PvuII	CAGCTG	2 cut(s)	335, 523
RsaI	GTAC	1 cut(s)	677
RsaNI	GTAC	1 cut(s)	676
RseI	CAYNNNNRTG	1 cut(s)	1193
Rsr2I	CGGWCCG	1 cut(s)	290
RsrII	CGGWCCG	1 cut(s)	290
SacI	GAGCTC	1 cut(s)	443
SaqAI	TTAA	1 cut(s)	1335
SatI	GCNGC	6 cut(s)	156, 159, 570, 726, 1017, 1220
Sau3AI	GATC	2 cut(s)	49, 525
Sau96I	GGNCC	1 cut(s)	290
ScaI	AGTACT	1 cut(s)	677
SchI	GAGTC	4 cut(s)	38, 1241, 1315, 1324
ScrFI	CCNGG	3 cut(s)	118, 182, 1353
SduI	GDGCHC	1 cut(s)	443
SfaNI	GCATC	1 cut(s)	612
SfcI	CTRYAG	3 cut(s)	711, 1002, 1220
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	1193
SmlI	CTYRAG	2 cut(s)	698, 989
SmoI	CTYRAG	2 cut(s)	698, 989
Sse9I	AATT	2 cut(s)	633, 1340
SsiI	CCGC	5 cut(s)	156, 293, 630, 725, 1016
SspI	AATATT	2 cut(s)	748, 1039
SspMI	CTAG	2 cut(s)	756, 1047
SstI	GAGCTC	1 cut(s)	443
StyD4I	CCNGG	3 cut(s)	116, 180, 1351
StyI	CCWWGG	1 cut(s)	264
TaiI	ACGT	2 cut(s)	42, 564
TaqI	TCGA	3 cut(s)	1280, 1288, 1294
TaqII	GACCGA	3 cut(s)	223, 775, 1066
TasI	AATT	2 cut(s)	633, 1340
TatI	WGTACW	1 cut(s)	675
TauI	GCSGC	3 cut(s)	158, 728, 1019
TfiI	GAWTC	8 cut(s)	11, 72, 225, 690, 865, 981, 1156, 1277
Tru1I	TTAA	1 cut(s)	1335
Tru9I	TTAA	1 cut(s)	1335
TscAI	CASTG	4 cut(s)	331, 586, 715, 1006
TseI	GCWGC	3 cut(s)	158, 569, 1219
TspDTI	ATGAA	1 cut(s)	538
TspGWI	ACGGA	1 cut(s)	680
TspRI	CASTG	4 cut(s)	331, 586, 715, 1006
VpaK11BI	GGWCC	1 cut(s)	290
XbaI	TCTAGA	2 cut(s)	755, 1046
XceI	RCATGY	1 cut(s)	100
XcmI	CCANNNNNNNNNTGG	2 cut(s)	429, 938
XmnI	GAANNNNTTC	2 cut(s)	229, 274
XspI	CTAG	2 cut(s)	756, 1047
ZrmI	AGTACT	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.