Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000240.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

117416 .. 123090

Gene Structure 5675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atggtggtggtggaatcactgggatggctgacggagtcgaccatcgaccataatgccaagaagcaccgcgaggagaacggaggcctttacaaggcatcaattccattgattcaggccacaagcccagaagcagatgttttacttgcttatgagatgaatggagaggtgaagaccctaaatagggatcatgggtatccattgcgtgtggttgtacctggtgttattggcacccattctgttaaatggcttgattctattaatgtcattgcagaggaatgtaagtgtggaatttgttcttcagatgatgtgaatgctgtaaagcctggaaaggcccagacccaagccccaatacctccaaagtctaaacactgtgccagacttctattcgaaagcacagaggcattagcccaacaaaccgccaccagcatctctccttctcagctaccaccaccaccacaccaggctagcaatcccgaccaccaaccactatcggcagctcccaaagaaccaaaattaagaataaggacgcccaagtctcccaaagccaaaggattccaacgcttaccgctagtaccactgccatccagatccatagaggaagaaaaacttccttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006725 GO:0006778 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008482 GO:0009987 GO:0010035 GO:0010477 GO:0015994 GO:0016491 GO:0016667 GO:0016670 GO:0033013 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051186 GO:0055114 GO:0071704 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

Mo-co_dimer Oxidored_molyb

Protein Analysis

205

Amino Acids

22.26

Weight (kDa)

8.32

Isoelectric Point (pI)

53.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_molyb	PF00174	25 - 93	2.3e-21	Oxidoreductase molybdopterin binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	532
AccB1I	GGYRCC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	38
AccII	CGCG	1 cut(s)	69
AciI	CCGC	3 cut(s)	67, 417, 566
AclWI	GGATC	2 cut(s)	192, 582
AcsI	RAATTY	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	527
AfaI	GTAC	2 cut(s)	213, 573
AfiI	CCNNNNNNNGG	3 cut(s)	91, 180, 181
AjnI	CCWGG	3 cut(s)	214, 322, 459
AluBI	AGCT	2 cut(s)	442, 497
AluI	AGCT	2 cut(s)	442, 497
Alw26I	GTCTC	1 cut(s)	540
AlwI	GGATC	2 cut(s)	192, 582
AoxI	GGCC	3 cut(s)	82, 114, 330
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	1 cut(s)	288
AseI	ATTAAT	1 cut(s)	258
Asp700I	GAANNNNTTC	2 cut(s)	292, 606
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	1 cut(s)	178
AsuII	TTCGAA	1 cut(s)	387
AsuNHI	GCTAGC	1 cut(s)	464
BanI	GGYRCC	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	506
BccI	CCATC	3 cut(s)	18, 50, 589
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciT130I	CCWGG	3 cut(s)	216, 324, 461
BciVI	GTATCC	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	540
BfaI	CTAG	2 cut(s)	465, 569
BfuI	GTATCC	1 cut(s)	204
BisI	GCNGC	1 cut(s)	495
BlsI	GCNGC	1 cut(s)	496
Bme1390I	CCNGG	3 cut(s)	216, 324, 461
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	3 cut(s)	216, 324, 461
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	2 cut(s)	104, 435
BmtI	GCTAGC	1 cut(s)	468
BmuI	ACTGGG	1 cut(s)	29
BpiI	GAAGAC	1 cut(s)	176
Bpu14I	TTCGAA	1 cut(s)	387
BsaHI	GRCGYC	1 cut(s)	527
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 180, 181
Bse1I	ACTGG	1 cut(s)	24
Bse3DI	GCAATG	2 cut(s)	197, 264
BseBI	CCWGG	3 cut(s)	216, 324, 461
BseGI	GGATG	2 cut(s)	29, 581
BseLI	CCNNNNNNNGG	3 cut(s)	91, 180, 181
BseMI	GCAATG	2 cut(s)	197, 264
BseMII	CTCAG	1 cut(s)	452
BseNI	ACTGG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	506
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	3 cut(s)	84, 116, 332
BshNI	GGYRCC	1 cut(s)	227
BslI	CCNNNNNNNGG	3 cut(s)	91, 180, 181
BsmAI	GTCTC	1 cut(s)	540
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	3 cut(s)	84, 116, 332
Bsp119I	TTCGAA	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	184, 587
BspACI	CCGC	3 cut(s)	67, 417, 566
BspANI	GGCC	3 cut(s)	84, 116, 332
BspCNI	CTCAG	1 cut(s)	451
BspFNI	CGCG	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	614
BspLI	GGNNCC	1 cut(s)	229
BspOI	GCTAGC	1 cut(s)	468
BspPI	GGATC	2 cut(s)	192, 582
BspT104I	TTCGAA	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	227
BsrDI	GCAATG	2 cut(s)	197, 264
BsrI	ACTGG	1 cut(s)	24
BssMI	GATC	2 cut(s)	184, 587
BssNI	GRCGYC	1 cut(s)	527
Bst2UI	CCWGG	3 cut(s)	216, 324, 461
Bst4CI	ACNGT	1 cut(s)	371
BstACI	GRCGYC	1 cut(s)	527
BstBI	TTCGAA	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	1 cut(s)	438
BstENI	CCTNNNNNAGG	1 cut(s)	89
BstF5I	GGATG	2 cut(s)	29, 581
BstFNI	CGCG	1 cut(s)	69
BstKTI	GATC	2 cut(s)	187, 590
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	2 cut(s)	184, 587
BstNI	CCWGG	3 cut(s)	216, 324, 461
BstSCI	CCNGG	3 cut(s)	214, 322, 459
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	506
BstV2I	GAAGAC	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
BsuI	GTATCC	1 cut(s)	204
BsuRI	GGCC	3 cut(s)	84, 116, 332
BtsCI	GGATG	2 cut(s)	29, 581
BtsI	GCAGTG	1 cut(s)	575
BtsIMutI	CAGTG	3 cut(s)	17, 367, 575
Cac8I	GCNNGC	1 cut(s)	466
CciI	TCATGA	1 cut(s)	614
Cfr13I	GGNCC	1 cut(s)	331
CseI	GACGC	1 cut(s)	535
CsiI	ACCWGGT	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	212, 572
CviAII	CATG	2 cut(s)	188, 615
CviQI	GTAC	2 cut(s)	212, 572
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	2 cut(s)	186, 589
DpnII	GATC	2 cut(s)	184, 587
DrdI	GACNNNNNNGTC	1 cut(s)	532
DseDI	GACNNNNNNGTC	1 cut(s)	532
Eco147I	AGGCCT	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	282
EcoNI	CCTNNNNNAGG	1 cut(s)	89
EcoRII	CCWGG	3 cut(s)	214, 322, 459
FaeI	CATG	2 cut(s)	191, 618
FaiI	YATR	5 cut(s)	51, 150, 189, 593, 616
FalI	AAGNNNNNCTT	1 cut(s)	591
FatI	CATG	2 cut(s)	187, 614
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	1 cut(s)	495
FokI	GGATG	2 cut(s)	36, 568
Fsp4HI	GCNGC	1 cut(s)	495
FspBI	CTAG	2 cut(s)	465, 569
GluI	GCNGC	1 cut(s)	495
HaeIII	GGCC	3 cut(s)	84, 116, 332
HgaI	GACGC	1 cut(s)	535
Hin1I	GRCGYC	1 cut(s)	527
Hin1II	CATG	2 cut(s)	191, 618
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	5 cut(s)	14, 35, 109, 251, 552
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	3 cut(s)	473, 585, 615
Hpy8I	GTNNAC	1 cut(s)	39
HpyAV	CCTTC	1 cut(s)	444
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4V	TGCA	1 cut(s)	269
HpyF3I	CTNAG	1 cut(s)	438
Hsp92I	GRCGYC	1 cut(s)	527
Hsp92II	CATG	2 cut(s)	191, 618
Kzo9I	GATC	2 cut(s)	184, 587
LmnI	GCTCC	1 cut(s)	502
Lsp1109I	GCAGC	1 cut(s)	506
LweI	GCATC	2 cut(s)	104, 435
MabI	ACCWGGT	1 cut(s)	214
MaeI	CTAG	2 cut(s)	465, 569
MalI	GATC	2 cut(s)	186, 589
MboI	GATC	2 cut(s)	184, 587
MboII	GAAGA	3 cut(s)	181, 288, 611
MflI	RGATCY	1 cut(s)	587
MluCI	AATT	3 cut(s)	99, 288, 512
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	580
MnlI	CCTC	7 cut(s)	64, 74, 157, 265, 363, 391, 589
MroXI	GAANNNNTTC	2 cut(s)	292, 606
MseI	TTAA	3 cut(s)	240, 258, 515
MslI	CAYNNNNRTG	1 cut(s)	22
MspR9I	CCNGG	3 cut(s)	216, 324, 461
Mva1269I	GAATGC	1 cut(s)	316
MvaI	CCWGG	3 cut(s)	216, 324, 461
MvnI	CGCG	1 cut(s)	69
NdeII	GATC	2 cut(s)	184, 587
NheI	GCTAGC	1 cut(s)	464
NlaIII	CATG	2 cut(s)	191, 618
NlaIV	GGNNCC	1 cut(s)	229
NspV	TTCGAA	1 cut(s)	387
PagI	TCATGA	1 cut(s)	614
PceI	AGGCCT	1 cut(s)	84
PctI	GAATGC	1 cut(s)	316
PdmI	GAANNNNTTC	2 cut(s)	292, 606
PfeI	GAWTC	4 cut(s)	14, 109, 251, 552
PflFI	GACNNNGTC	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	496
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PshBI	ATTAAT	1 cut(s)	258
Psp6I	CCWGG	3 cut(s)	214, 322, 459
PspGI	CCWGG	3 cut(s)	214, 322, 459
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	587
PsyI	GACNNNGTC	1 cut(s)	34
RsaI	GTAC	2 cut(s)	213, 573
RsaNI	GTAC	2 cut(s)	212, 572
RseI	CAYNNNNRTG	1 cut(s)	22
SalI	GTCGAC	1 cut(s)	37
SaqAI	TTAA	3 cut(s)	240, 258, 515
SatI	GCNGC	1 cut(s)	495
Sau3AI	GATC	2 cut(s)	184, 587
Sau96I	GGNCC	1 cut(s)	331
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	3 cut(s)	216, 324, 461
SetI	ASST	5 cut(s)	168, 217, 355, 444, 499
SexAI	ACCWGGT	1 cut(s)	214
SfaNI	GCATC	2 cut(s)	104, 435
SfuI	TTCGAA	1 cut(s)	387
SmiMI	CAYNNNNRTG	1 cut(s)	22
Sse9I	AATT	3 cut(s)	99, 288, 512
SseBI	AGGCCT	1 cut(s)	84
SsiI	CCGC	3 cut(s)	67, 417, 566
SspMI	CTAG	2 cut(s)	465, 569
StuI	AGGCCT	1 cut(s)	84
StyD4I	CCNGG	3 cut(s)	214, 322, 459
TaaI	ACNGT	1 cut(s)	371
TaqI	TCGA	3 cut(s)	38, 45, 387
TasI	AATT	3 cut(s)	99, 288, 512
TfiI	GAWTC	4 cut(s)	14, 109, 251, 552
Tru1I	TTAA	3 cut(s)	240, 258, 515
Tru9I	TTAA	3 cut(s)	240, 258, 515
TscAI	CASTG	3 cut(s)	24, 374, 582
TseI	GCWGC	1 cut(s)	494
TspDTI	ATGAA	2 cut(s)	170, 603
TspGWI	ACGGA	2 cut(s)	47, 93
TspRI	CASTG	3 cut(s)	24, 374, 582
Tth111I	GACNNNGTC	1 cut(s)	34
VspI	ATTAAT	1 cut(s)	258
XagI	CCTNNNNNAGG	1 cut(s)	89
XapI	RAATTY	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	38
XmnI	GAANNNNTTC	2 cut(s)	292, 606
XspI	CTAG	2 cut(s)	465, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.