Rmu_sc0000240.1_g000038

RING finger and transmembrane domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000240.1
N/A
Physical Location & Seq
Reverse (-)
202085 .. 205036
2952 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 810 bp
atggaccatggaaaagagtccggagcgacgctgttcttgtttctcggcggccagaataaagccggcgactccttcttcgtcttgagcatcagccttttaagggtggagcaccatcacggtcaggtggatcaatcgagcaatgatggggaggtttcgattaggataattggtgcaggggagcaagagcatgatagggaagggggtggtttagtagttggacagttgagggagagtagtcttctgcaaaatgatgtttccggacagccaatagctagggtgggctctgttacagtggtatcggaggagggtcagggagatggtaggacggatgttggttctggagacggcatgtcacaatcgatgaatggaagtgctgatggagaagctggtgatggtgctggggctaatggcagggattcttcgtaccagagatatgatattcagcaggcagctaggtggattgagcaggtcctgcccttttccttgcttctattggtggtcttcattcgccagcatttgcaaggtttctttgttactatctggattgctgctgttatgtttaagtcgaatgatatcctaaggaaacagactgctttgaaggtcagtgcagctggcgatctatgtgccatctgccaggagaaaatgcatgctcctatcttacttcgttgtaaacacatcttctgtgaggactgtgtatcagagtggtttgagagggaacgaacctgcccgttgtgcagggctttggtaaaacctgcagatcttagatcgtttggcgatggatcaacgagtttgttcttccagctgttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3 zf-RING_2

Protein Analysis

269

Amino Acids

29.24

Weight (kDa)

5.25

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 206 - 249 2.8e-10 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 206 - 246 5.1e-06 RING-H2 zinc finger domain
zf-RING_2 PF13639 207 - 246 8.8e-11 Ring finger domain
zf-C3HC4 PF00097 208 - 245 1.5e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 208 - 245 3e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 208 - 243 3.7e-08 RING-type zinc-finger
zf-RING_5 PF14634 208 - 246 1.2e-07 zinc-RING finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 457, 731, 760
AccIII TCCGGA 2 cut(s) 20, 257
AciI CCGC 1 cut(s) 48
AclWI GGATC 2 cut(s) 135, 787
AcoI YGGCCR 1 cut(s) 49
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 1 cut(s) 598
AhdI GACNNNNNGTC 1 cut(s) 349
AjnI CCWGG 1 cut(s) 633
AluBI AGCT 5 cut(s) 272, 386, 452, 611, 802
AluI AGCT 5 cut(s) 272, 386, 452, 611, 802
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 336
AlwI GGATC 2 cut(s) 135, 787
AlwNI CAGNNNCTG 1 cut(s) 472
Aor13HI TCCGGA 2 cut(s) 20, 257
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 3 cut(s) 449, 548, 608
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AspS9I GGNCC 2 cut(s) 4, 469
AsuHPI GGTGA 1 cut(s) 401
AvaII GGWCC 2 cut(s) 4, 469
AxyI CCTNAGG 1 cut(s) 578
BaeI ACNNNNGTAYC 2 cut(s) 279, 312
BanII GRGCYC 1 cut(s) 284
BbsI GAAGAC 2 cut(s) 230, 493
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 3 cut(s) 461, 535, 620
BccI CCATC 7 cut(s) 120, 137, 311, 371, 386, 635, 770
BceAI ACGGC 1 cut(s) 361
BcgI CGANNNNNNTGC 2 cut(s) 605, 639
BciT130I CCWGG 1 cut(s) 635
BcoDI GTCTC 1 cut(s) 336
BfaI CTAG 2 cut(s) 273, 453
BfmI CTRYAG 1 cut(s) 753
BfuAI ACCTGC 3 cut(s) 457, 731, 760
BglII AGATCT 1 cut(s) 757
BisI GCNGC 4 cut(s) 49, 450, 549, 609
BlsI GCNGC 4 cut(s) 50, 451, 550, 610
Bme1390I CCNGG 1 cut(s) 635
Bme18I GGWCC 2 cut(s) 4, 469
BmeRI GACNNNNNGTC 1 cut(s) 349
BmgT120I GGNCC 2 cut(s) 4, 469
BmrFI CCNGG 1 cut(s) 635
BmsI GCATC 1 cut(s) 96
BpiI GAAGAC 2 cut(s) 230, 493
BpmI CTGGAG 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 103
Bsa29I ATCGAT 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 7
BsaWI WCCGGW 2 cut(s) 20, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse118I RCCGGY 1 cut(s) 62
Bse21I CCTNAGG 1 cut(s) 578
Bse3DI GCAATG 1 cut(s) 145
BseAI TCCGGA 2 cut(s) 20, 257
BseBI CCWGG 1 cut(s) 635
BseCI ATCGAT 1 cut(s) 359
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 317
BseXI GCAGC 3 cut(s) 461, 535, 620
BseYI CCCAGC 1 cut(s) 398
BsgI GTGCAG 3 cut(s) 192, 627, 754
BshFI GGCC 1 cut(s) 51
BshVI ATCGAT 1 cut(s) 359
BsiHKAI GWGCWC 1 cut(s) 111
BsiSI CCGG 3 cut(s) 21, 63, 258
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 336
BsmBI CGTCTC 1 cut(s) 336
BsnI GGCC 1 cut(s) 51
Bsp1286I GDGCHC 2 cut(s) 111, 284
Bsp13I TCCGGA 2 cut(s) 20, 257
Bsp143I GATC 5 cut(s) 127, 616, 757, 764, 779
Bsp19I CCATGG 1 cut(s) 7
BspACI CCGC 1 cut(s) 48
BspANI GGCC 1 cut(s) 51
BspDI ATCGAT 1 cut(s) 359
BspEI TCCGGA 2 cut(s) 20, 257
BspMAI CTGCAG 1 cut(s) 757
BspMI ACCTGC 3 cut(s) 457, 731, 760
BspPI GGATC 2 cut(s) 135, 787
BsrDI GCAATG 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 5 cut(s) 127, 616, 757, 764, 779
BssT1I CCWWGG 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 635
Bst4CI ACNGT 4 cut(s) 119, 222, 292, 692
BstAPI GCANNNNNTGC 1 cut(s) 472
BstC8I GCNNGC 5 cut(s) 64, 447, 512, 613, 648
BstDEI CTNAG 2 cut(s) 578, 761
BstDSI CCRYGG 1 cut(s) 7
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 5 cut(s) 130, 619, 760, 767, 782
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 5 cut(s) 127, 616, 757, 764, 779
BstMWI GCNNNNNNNGC 2 cut(s) 472, 732
BstNI CCWGG 1 cut(s) 635
BstNSI RCATGY 2 cut(s) 352, 650
BstSCI CCNGG 1 cut(s) 633
BstSFI CTRYAG 1 cut(s) 753
BstV1I GCAGC 3 cut(s) 461, 535, 620
BstV2I GAAGAC 2 cut(s) 230, 493
BstX2I RGATCY 1 cut(s) 757
BstYI RGATCY 1 cut(s) 757
Bsu15I ATCGAT 1 cut(s) 359
Bsu36I CCTNAGG 1 cut(s) 578
BsuRI GGCC 1 cut(s) 51
BsuTUI ATCGAT 1 cut(s) 359
BtgI CCRYGG 1 cut(s) 7
BtgZI GCGATG 1 cut(s) 789
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 2 cut(s) 297, 610
BveI ACCTGC 3 cut(s) 457, 731, 760
Cac8I GCNNGC 5 cut(s) 64, 447, 512, 613, 648
CaiI CAGNNNCTG 1 cut(s) 472
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 2 cut(s) 4, 469
ClaI ATCGAT 1 cut(s) 359
CseI GACGC 1 cut(s) 37
Csp6I GTAC 1 cut(s) 424
CviAII CATG 4 cut(s) 8, 188, 349, 647
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 2 cut(s) 578, 761
DpnI GATC 5 cut(s) 129, 618, 759, 766, 781
DpnII GATC 5 cut(s) 127, 616, 757, 764, 779
DriI GACNNNNNGTC 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 49
Eam1105I GACNNNNNGTC 1 cut(s) 349
Eco130I CCWWGG 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 284
Eco32I GATATC 1 cut(s) 574
Eco47I GGWCC 2 cut(s) 4, 469
Eco81I CCTNAGG 1 cut(s) 578
EcoO109I RGGNCCY 1 cut(s) 469
EcoRII CCWGG 1 cut(s) 633
EcoRV GATATC 1 cut(s) 574
EcoT14I CCWWGG 1 cut(s) 7
EcoT22I ATGCAT 1 cut(s) 648
EcoT38I GRGCYC 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 7
Esp3I CGTCTC 1 cut(s) 336
FaeI CATG 4 cut(s) 11, 191, 352, 650
FaiI YATR 7 cut(s) 9, 189, 350, 435, 557, 622, 648
FatI CATG 4 cut(s) 7, 187, 348, 646
Fnu4HI GCNGC 4 cut(s) 49, 450, 549, 609
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 4 cut(s) 49, 450, 549, 609
FspBI CTAG 2 cut(s) 273, 453
GluI GCNGC 4 cut(s) 49, 450, 549, 609
GsaI CCCAGC 1 cut(s) 402
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 1 cut(s) 51
HapII CCGG 3 cut(s) 21, 63, 258
HgaI GACGC 1 cut(s) 37
Hin1II CATG 4 cut(s) 11, 191, 352, 650
HinfI GANTC 3 cut(s) 17, 68, 416
HpaII CCGG 3 cut(s) 21, 63, 258
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 1 cut(s) 671
Hpy188I TCNGA 2 cut(s) 301, 700
Hpy188III TCNNGA 5 cut(s) 21, 82, 258, 339, 541
Hpy8I GTNNAC 1 cut(s) 671
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 3 cut(s) 82, 191, 592
HpyCH4III ACNGT 4 cut(s) 119, 222, 292, 692
HpyCH4V TGCA 7 cut(s) 173, 244, 520, 608, 646, 735, 755
HpyF10VI GCNNNNNNNGC 2 cut(s) 472, 732
HpyF3I CTNAG 2 cut(s) 578, 761
Hsp92II CATG 4 cut(s) 11, 191, 352, 650
Kpn2I TCCGGA 2 cut(s) 20, 257
KroI GCCGGC 1 cut(s) 62
KroNI GCCGGC 1 cut(s) 64
Kzo9I GATC 5 cut(s) 127, 616, 757, 764, 779
LmnI GCTCC 4 cut(s) 23, 106, 178, 655
Lsp1109I GCAGC 3 cut(s) 461, 535, 620
LweI GCATC 1 cut(s) 96
MaeI CTAG 2 cut(s) 273, 453
MaeIII GTNAC 3 cut(s) 286, 351, 532
MalI GATC 5 cut(s) 129, 618, 759, 766, 781
MboI GATC 5 cut(s) 127, 616, 757, 764, 779
MboII GAAGA 6 cut(s) 67, 230, 411, 493, 670, 787
MflI RGATCY 1 cut(s) 757
MhlI GDGCHC 2 cut(s) 111, 284
MluCI AATT 1 cut(s) 165
MlyI GAGTC 2 cut(s) 26, 62
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 6 cut(s) 142, 219, 295, 298, 679, 705
Mph1103I ATGCAT 1 cut(s) 648
MroI TCCGGA 2 cut(s) 20, 257
MroNI GCCGGC 1 cut(s) 62
MseI TTAA 3 cut(s) 98, 561, 808
MspA1I CMGCKG 2 cut(s) 611, 802
MspI CCGG 3 cut(s) 21, 63, 258
MspR9I CCNGG 1 cut(s) 635
MvaI CCWGG 1 cut(s) 635
MwoI GCNNNNNNNGC 2 cut(s) 472, 732
NaeI GCCGGC 1 cut(s) 64
NcoI CCATGG 1 cut(s) 7
NdeII GATC 5 cut(s) 127, 616, 757, 764, 779
NgoMIV GCCGGC 1 cut(s) 62
NlaIII CATG 4 cut(s) 11, 191, 352, 650
NmeAIII GCCGAG 1 cut(s) 24
NmuCI GTSAC 1 cut(s) 351
NsiI ATGCAT 1 cut(s) 648
NspI RCATGY 2 cut(s) 352, 650
PaeI GCATGC 1 cut(s) 650
PdiI GCCGGC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 416
PkrI GCNGC 4 cut(s) 50, 451, 550, 610
PleI GAGTC 2 cut(s) 25, 62
PpsI GAGTC 2 cut(s) 25, 62
PpuMI RGGWCCY 1 cut(s) 469
Psp5II RGGWCCY 1 cut(s) 469
Psp6I CCWGG 1 cut(s) 633
PspFI CCCAGC 1 cut(s) 398
PspGI CCWGG 1 cut(s) 633
PspPI GGNCC 2 cut(s) 4, 469
PspPPI RGGWCCY 1 cut(s) 469
PstI CTGCAG 1 cut(s) 757
PstNI CAGNNNCTG 1 cut(s) 472
PsuI RGATCY 1 cut(s) 757
PvuII CAGCTG 2 cut(s) 611, 802
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
SaqAI TTAA 3 cut(s) 98, 561, 808
SatI GCNGC 4 cut(s) 49, 450, 549, 609
Sau3AI GATC 5 cut(s) 127, 616, 757, 764, 779
Sau96I GGNCC 2 cut(s) 4, 469
SchI GAGTC 2 cut(s) 26, 62
ScrFI CCNGG 1 cut(s) 635
SduI GDGCHC 2 cut(s) 111, 284
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 1 cut(s) 753
SinI GGWCC 2 cut(s) 4, 469
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
SphI GCATGC 1 cut(s) 650
Sse9I AATT 1 cut(s) 165
SsiI CCGC 1 cut(s) 48
SspMI CTAG 2 cut(s) 273, 453
StyD4I CCNGG 1 cut(s) 633
StyI CCWWGG 1 cut(s) 7
TaaI ACNGT 4 cut(s) 119, 222, 292, 692
TaqI TCGA 4 cut(s) 134, 155, 359, 566
TasI AATT 1 cut(s) 165
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 3 cut(s) 98, 561, 808
Tru9I TTAA 3 cut(s) 98, 561, 808
TscAI CASTG 2 cut(s) 297, 610
TseFI GTSAC 1 cut(s) 351
TseI GCWGC 3 cut(s) 449, 548, 608
Tsp45I GTSAC 1 cut(s) 351
TspDTI ATGAA 2 cut(s) 377, 493
TspGWI ACGGA 1 cut(s) 341
TspRI CASTG 2 cut(s) 297, 610
VpaK11BI GGWCC 2 cut(s) 4, 469
XceI RCATGY 2 cut(s) 352, 650
XspI CTAG 2 cut(s) 273, 453
Zsp2I ATGCAT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.