Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000258.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

111039 .. 111733

Gene Structure 695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atggaaccacaaacccagcaaccaaaagaggatggaggaagcaacaaagcagcagggagtagtgctaacaagctttgcaggcagagcagtaccaggtggactcccactacagatcagataagaatcctcaaggagctttactacaacaaaggagttaggtccccaactgcagagcagattcagaggatctgtctccacctgagatggcagatggggaactatggtgggtatggatctttgaacatggagattgaaacccttcctctgttccccatgcacggtgaggacatctttggcaacatgaagactacttacgatgaaggtggcggctacagctactattctggtggatggggcggcatcaacgatggctctcacatttcccttgagctcagcctcaactcctactgcttgaccccattttcctgcgaaggtgttttctcggcgagagaagagacaaagctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

155

Amino Acids

17.28

Weight (kDa)

5.6

Isoelectric Point (pI)

65.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	327, 357
AclWI	GGATC	2 cut(s)	194, 241
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	241, 254
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	5 cut(s)	73, 136, 336, 391, 463
AluI	AGCT	5 cut(s)	73, 136, 336, 391, 463
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	2 cut(s)	197, 449
AlwI	GGATC	2 cut(s)	194, 241
ApeKI	GCWGC	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	393
BarI	GAAGNNNNNNTAC	2 cut(s)	296, 328
BbsI	GAAGAC	1 cut(s)	311
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	5 cut(s)	26, 198, 205, 345, 362
BciT130I	CCWGG	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	197, 449
BfmI	CTRYAG	3 cut(s)	108, 168, 331
BisI	GCNGC	3 cut(s)	51, 328, 358
BlpI	GCTNAGC	1 cut(s)	392
BlsI	GCNGC	3 cut(s)	52, 329, 359
Bme1390I	CCNGG	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	6, 161
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	1 cut(s)	369
BpiI	GAAGAC	1 cut(s)	311
Bpu1102I	GCTNAGC	1 cut(s)	392
BpuEI	CTTGAG	2 cut(s)	113, 407
BsaBI	GATNNNNATC	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse8I	GATNNNNATC	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	94
BseGI	GGATG	2 cut(s)	37, 356
BseJI	GATNNNNATC	1 cut(s)	122
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMII	CTCAG	2 cut(s)	191, 406
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	393
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	2 cut(s)	197, 449
BsmFI	GGGAC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	3 cut(s)	112, 186, 233
Bsp1720I	GCTNAGC	1 cut(s)	392
BspACI	CCGC	2 cut(s)	327, 357
BspCNI	CTCAG	2 cut(s)	192, 405
BspLI	GGNNCC	2 cut(s)	6, 161
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	2 cut(s)	194, 241
BssMI	GATC	3 cut(s)	112, 186, 233
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	447
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	200, 392
BstF5I	GGATG	2 cut(s)	37, 356
BstKTI	GATC	3 cut(s)	115, 189, 236
BstMAI	GTCTC	2 cut(s)	197, 449
BstMBI	GATC	3 cut(s)	112, 186, 233
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 84, 333
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	3 cut(s)	108, 168, 331
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	2 cut(s)	186, 233
BstYI	RGATCY	2 cut(s)	186, 233
BtsCI	GGATG	2 cut(s)	37, 356
Cac8I	GCNNGC	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	159
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	3 cut(s)	244, 274, 301
CviJI	RGCY	8 cut(s)	73, 136, 330, 336, 372, 391, 396, 463
CviKI_1	RGCY	8 cut(s)	73, 136, 330, 336, 372, 391, 396, 463
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	2 cut(s)	200, 392
DpnI	GATC	3 cut(s)	114, 188, 235
DpnII	GATC	3 cut(s)	112, 186, 233
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Ecl136II	GAGCTC	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	391
EcoICRI	GAGCTC	1 cut(s)	391
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	393
FaeI	CATG	3 cut(s)	247, 277, 304
FaiI	YATR	5 cut(s)	222, 231, 245, 275, 302
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	3 cut(s)	243, 273, 300
Fnu4HI	GCNGC	3 cut(s)	51, 328, 358
FokI	GGATG	2 cut(s)	44, 363
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	3 cut(s)	51, 328, 358
GluI	GCNGC	3 cut(s)	51, 328, 358
GsaI	CCCAGC	1 cut(s)	19
Hin1II	CATG	3 cut(s)	247, 277, 304
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	3 cut(s)	100, 123, 178
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	2 cut(s)	117, 183
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	3 cut(s)	269, 314, 425
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	3 cut(s)	78, 170, 277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 84, 333
HpyF3I	CTNAG	2 cut(s)	200, 392
Hsp92II	CATG	3 cut(s)	247, 277, 304
Kzo9I	GATC	3 cut(s)	112, 186, 233
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	8 cut(s)	29, 39, 64, 79, 106, 212, 330, 439
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	369
MabI	ACCWGGT	1 cut(s)	92
MalI	GATC	3 cut(s)	114, 188, 235
MboI	GATC	3 cut(s)	112, 186, 233
MboII	GAAGA	2 cut(s)	316, 464
MflI	RGATCY	2 cut(s)	186, 233
MhlI	GDGCHC	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	7 cut(s)	22, 29, 137, 177, 273, 277, 407
MroXI	GAANNNNTTC	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	3 cut(s)	79, 84, 333
NdeII	GATC	3 cut(s)	112, 186, 233
NlaIII	CATG	3 cut(s)	247, 277, 304
NlaIV	GGNNCC	2 cut(s)	6, 161
NmeAIII	GCCGAG	1 cut(s)	422
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	123, 178
PkrI	GCNGC	3 cut(s)	52, 329, 359
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PpuMI	RGGWCCY	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	393
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	6, 161
PspPI	GGNCC	1 cut(s)	159
PspPPI	RGGWCCY	1 cut(s)	159
PstI	CTGCAG	1 cut(s)	172
PsuI	RGATCY	2 cut(s)	186, 233
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	393
SatI	GCNGC	3 cut(s)	51, 328, 358
Sau3AI	GATC	3 cut(s)	112, 186, 233
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	393
SexAI	ACCWGGT	1 cut(s)	92
SfaNI	GCATC	1 cut(s)	369
SfcI	CTRYAG	3 cut(s)	108, 168, 331
SinI	GGWCC	1 cut(s)	159
SmlI	CTYRAG	2 cut(s)	128, 386
SmoI	CTYRAG	2 cut(s)	128, 386
SsiI	CCGC	2 cut(s)	327, 357
SstI	GAGCTC	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	281
TauI	GCSGC	2 cut(s)	330, 360
TfiI	GAWTC	2 cut(s)	123, 178
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	317, 333
VpaK11BI	GGWCC	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.