Rmu_sc0000271.1_g000011
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000271.1
N/A
Physical Location & Seq
Reverse (-)
51454 .. 55688
4235 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2265 bp
atggatggaagttcgattgatgttgtcagagaacttcccatttcgattgatgttgtcagggaacttcccatttcgattgatgttgtcagggaacttcccatttcgattgatgttgtcagggaacttcccatttctaatgctgctcgcactttggtcttagttggacgcgctggtaatggaaaaagtgcaacaggcaacagcattcttggcaaaaacgccttcaaggccaatcatagctctagtggtgtcacgaccactactgaattgaagactgctatcttgagagatggacaacaaattaatgttatagacactcctggtatttttgataattctgccaaatcagactttattggcaaagaaattgcccaatgcattaatttggctgaggatgggatccatgctgttcttgtggttctctcaactagaactcgctttacaaaagaagaggagtctgcaatccttagcttgcaaactgtatttggaagtaaaatcattgactatatgattgttgtctttacgggaggagatggcttggaagaaaatgatgagactttggaagattatttgagccgtgattgcccggagcctttgaaggttgagctaaagatgagagagaaaaccatgatgcttgaacaaaagttagtagatgaacatgctgcacgactaagagcagaaaagactgcccaaaaggctcaacaagggtctgagaatgaaatccaaaagcttagagatgaactacaagcagagatgtggaaaagagccgaagagactgcccaagaggctcaacaaaggtctgaggatgaaatccgaaagcttagagacgatatgcaagcagagatactaaaaagagccgaagagactgcagagatgaggaaaaaagctgaagagactgcccaagaggctcaacaaaggtctgaggatgaaatccgaaagcttagagacgatctgcaagcagagatactaaaaagagccaaagagactgcagagatgaggaaaaaagctgaagagactgcccaagaggctcaacaaaggtctgaggatgaaatccgaaagcttagagacgatctgcaagcagagatactaaaaagagccaaagagactgcagagatgaggaaaaaagctgaagagactgcccaagaggctcaacaaagatttgaggatgaaatccggaagcttagagatgatctgcaagcagaaatgaggaaaaaagctgaagaaactgtagagatggggaaaaaagctgaagagactgcccaagaggctcaacaaaggtctgaggatgaaatccgaaagcttagagatgatctgcaagcagagatgaagaaaagagccgaagagactgcagagatgcggaaaagagccgaagagagtgcccaagaggctcaacaaaggtctgatgatgaaatccgaaagcttagagatgatctgcaagcaaagatggggaaaagagcccaagagactgcccaagaggctcaacaaaggtctgaggatgaaatcagaaagcttagagatgatctggaagcagagatgtggaaaagagccgaagagattgcagagatgttgaaaagagccgaagagattgccaaagcagaaattctaaagcttagagacgatctgcaagaagagatgcggaaaagagcagaagagactatagagatgcggaaaaaagttgaagagagtgcccaagaggctcaacaaaggtctgaggatgaaatccaaaagcttagagatgatctgcaagcagagatgaggaaaagagccgaagagactgcccaagaggctcaacaaaggtctgaggatgaaatccgaaagcttagagacgatctgcaagaagagatacggaaaagagtcgaagagactacagagatgagcaaaaaagccaaagagagtgcccaagaggctcaacaaaggtctgaggatgaaatccgaaagcttagagaagatctgcaagtagagatgaggaaaagagccgaagagactgcagagatgacgaaaaaagctgaagagactgcccaaggggctcaacaaagttctaaggatgaaatccgaaagcttagaaatgatctagaagtagagatgcgaaaaagagccgaagagactgcccaagaggctcaacagagatctaaggttgaaatccaaaagcttagagactatctgcaagtagagatacagaaaggagtccaagagattaaccacgaaattgctaaggctgcaatccgaaggatggttgagtcgaagccaagcgattgttctctaatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

754

Amino Acids

87.24

Weight (kDa)

5.03

Isoelectric Point (pI)

64.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIG1 PF04548 50 - 220 4.5e-58 AIG1 family
MMR_HSR1 PF01926 51 - 152 3.1e-09 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 168
AccIII TCCGGA 1 cut(s) 1170
AciI CCGC 3 cut(s) 1354, 1633, 1663
AclWI GGATC 2 cut(s) 391, 404
AcsI RAATTY 1 cut(s) 1596
AcuI CTGAAG 6 cut(s) 906, 1026, 1146, 1236, 1266, 2025
AfiI CCNNNNNNNGG 1 cut(s) 2227
AgsI TTSAA 7 cut(s) 223, 268, 595, 635, 1567, 1676, 2135
AjnI CCWGG 1 cut(s) 316
AjuI GAANNNNNNNTTGG 1 cut(s) 2236
AlwI GGATC 2 cut(s) 391, 404
Aor13HI TCCGGA 1 cut(s) 1170
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 3 cut(s) 140, 659, 2213
ApoI RAATTY 1 cut(s) 1596
AseI ATTAAT 2 cut(s) 300, 378
AspLEI GCGC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 584
BaeGI GKGCMC 3 cut(s) 1378, 1687, 1897
BamHI GGATCC 1 cut(s) 396
BanII GRGCYC 2 cut(s) 1456, 2026
BbsI GAAGAC 1 cut(s) 275
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 3 cut(s) 127, 646, 2200
BccI CCATC 6 cut(s) 281, 386, 524, 1225, 1435, 2221
BceAI ACGGC 1 cut(s) 558
BciT130I CCWGG 1 cut(s) 318
BcnI CCSGG 1 cut(s) 584
BfaI CTAG 3 cut(s) 240, 426, 2069
BfmI CTRYAG 8 cut(s) 864, 984, 1104, 1224, 1344, 1653, 1863, 1983
BglII AGATCT 2 cut(s) 1945, 2123
BisI GCNGC 3 cut(s) 141, 660, 2214
BlsI GCNGC 3 cut(s) 142, 661, 2215
Bme1390I CCNGG 2 cut(s) 318, 584
BmiI GGNNCC 2 cut(s) 398, 588
BmrFI CCNGG 2 cut(s) 318, 584
BmsI GCATC 5 cut(s) 618, 1341, 1620, 1650, 2070
BpiI GAAGAC 1 cut(s) 275
Bpu10I CCTNAGC 3 cut(s) 387, 464, 2208
BpuEI CTTGAG 1 cut(s) 301
BpuMI CCSGG 1 cut(s) 584
BsaJI CCNNGG 1 cut(s) 2017
BsaWI WCCGGW 1 cut(s) 1170
Bsc4I CCNNNNNNNGG 1 cut(s) 2227
BseAI TCCGGA 1 cut(s) 1170
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 2017
BseLI CCNNNNNNNGG 1 cut(s) 2227
BseRI GAGGAG 2 cut(s) 464, 540
BseSI GKGCMC 3 cut(s) 1378, 1687, 1897
BseXI GCAGC 3 cut(s) 127, 646, 2200
BsgI GTGCAG 1 cut(s) 645
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 1 cut(s) 227
BsiSI CCGG 2 cut(s) 584, 1171
BslI CCNNNNNNNGG 1 cut(s) 2227
BsmBI CGTCTC 5 cut(s) 816, 936, 1056, 1605, 1815
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 1 cut(s) 227
Bsp1286I GDGCHC 5 cut(s) 1378, 1456, 1687, 1897, 2026
Bsp13I TCCGGA 1 cut(s) 1170
BspACI CCGC 3 cut(s) 1354, 1633, 1663
BspANI GGCC 1 cut(s) 227
BspEI TCCGGA 1 cut(s) 1170
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 2 cut(s) 398, 588
BspMAI CTGCAG 5 cut(s) 868, 988, 1108, 1348, 1987
BspPI GGATC 2 cut(s) 391, 404
BssECI CCNNGG 1 cut(s) 2017
BssT1I CCWWGG 1 cut(s) 2017
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 2 cut(s) 478, 1225
BstC8I GCNNGC 9 cut(s) 145, 470, 834, 954, 1074, 1194, 1314, 1434, 1743
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 1 cut(s) 170
BstNI CCWGG 1 cut(s) 318
BstNSI RCATGY 1 cut(s) 659
BstSCI CCNGG 2 cut(s) 316, 582
BstSFI CTRYAG 8 cut(s) 864, 984, 1104, 1224, 1344, 1653, 1863, 1983
BstSLI GKGCMC 3 cut(s) 1378, 1687, 1897
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 3 cut(s) 127, 646, 2200
BstV2I GAAGAC 1 cut(s) 275
BstX2I RGATCY 3 cut(s) 396, 1945, 2123
BstYI RGATCY 3 cut(s) 396, 1945, 2123
BsuRI GGCC 1 cut(s) 227
Cac8I GCNNGC 9 cut(s) 145, 470, 834, 954, 1074, 1194, 1314, 1434, 1743
CfoI GCGC 1 cut(s) 170
CseI GACGC 1 cut(s) 174
CviAII CATG 3 cut(s) 401, 625, 656
Eco130I CCWWGG 1 cut(s) 2017
Eco24I GRGCYC 2 cut(s) 1456, 2026
Eco57I CTGAAG 6 cut(s) 906, 1026, 1146, 1236, 1266, 2025
EcoRII CCWGG 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 2017
EcoT22I ATGCAT 1 cut(s) 377
EcoT38I GRGCYC 2 cut(s) 1456, 2026
ErhI CCWWGG 1 cut(s) 2017
Esp3I CGTCTC 5 cut(s) 816, 936, 1056, 1605, 1815
FaeI CATG 3 cut(s) 404, 628, 659
FaiI YATR 9 cut(s) 234, 308, 402, 504, 506, 626, 657, 830, 1655
FatI CATG 3 cut(s) 400, 624, 655
Fnu4HI GCNGC 3 cut(s) 141, 660, 2214
FriOI GRGCYC 2 cut(s) 1456, 2026
Fsp4HI GCNGC 3 cut(s) 141, 660, 2214
FspBI CTAG 3 cut(s) 240, 426, 2069
GlaI GCGC 1 cut(s) 169
GluI GCNGC 3 cut(s) 141, 660, 2214
HaeIII GGCC 1 cut(s) 227
HapII CCGG 2 cut(s) 584, 1171
HgaI GACGC 1 cut(s) 174
HhaI GCGC 1 cut(s) 170
Hin1II CATG 3 cut(s) 404, 628, 659
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HinfI GANTC 4 cut(s) 452, 1851, 2181, 2234
HpaII CCGG 2 cut(s) 584, 1171
Hpy188III TCNNGA 5 cut(s) 250, 280, 1171, 1520, 2069
HpyAV CCTTC 3 cut(s) 229, 589, 2217
HpyCH4III ACNGT 2 cut(s) 478, 1225
Hsp92II CATG 3 cut(s) 404, 628, 659
HspAI GCGC 1 cut(s) 168
Kpn2I TCCGGA 1 cut(s) 1170
LmnI GCTCC 1 cut(s) 586
Lsp1109I GCAGC 3 cut(s) 127, 646, 2200
LweI GCATC 5 cut(s) 618, 1341, 1620, 1650, 2070
MaeI CTAG 3 cut(s) 240, 426, 2069
MaeIII GTNAC 1 cut(s) 247
MflI RGATCY 3 cut(s) 396, 1945, 2123
MhlI GDGCHC 5 cut(s) 1378, 1456, 1687, 1897, 2026
MluCI AATT 7 cut(s) 263, 297, 331, 363, 379, 1596, 2202
MlyI GAGTC 4 cut(s) 461, 1860, 2190, 2243
MmeI TCCRAC 1 cut(s) 142
Mph1103I ATGCAT 1 cut(s) 377
MroI TCCGGA 1 cut(s) 1170
MseI TTAA 3 cut(s) 300, 378, 2193
MspI CCGG 2 cut(s) 584, 1171
MspR9I CCNGG 2 cut(s) 318, 584
Mva1269I GAATGC 1 cut(s) 201
MvaI CCWGG 1 cut(s) 318
MvnI CGCG 1 cut(s) 168
NciI CCSGG 1 cut(s) 584
NlaIII CATG 3 cut(s) 404, 628, 659
NlaIV GGNNCC 2 cut(s) 398, 588
NmuCI GTSAC 1 cut(s) 247
NsiI ATGCAT 1 cut(s) 377
NspI RCATGY 1 cut(s) 659
PctI GAATGC 1 cut(s) 201
PkrI GCNGC 3 cut(s) 142, 661, 2215
PleI GAGTC 4 cut(s) 460, 1859, 2189, 2242
PpsI GAGTC 4 cut(s) 460, 1859, 2189, 2242
PshBI ATTAAT 2 cut(s) 300, 378
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 2 cut(s) 398, 588
PsrI GAACNNNNNNTAC 2 cut(s) 421, 453
PstI CTGCAG 5 cut(s) 868, 988, 1108, 1348, 1987
PsuI RGATCY 3 cut(s) 396, 1945, 2123
SaqAI TTAA 3 cut(s) 300, 378, 2193
SatI GCNGC 3 cut(s) 141, 660, 2214
SchI GAGTC 4 cut(s) 461, 1860, 2190, 2243
ScrFI CCNGG 2 cut(s) 318, 584
SduI GDGCHC 5 cut(s) 1378, 1456, 1687, 1897, 2026
SfaNI GCATC 5 cut(s) 618, 1341, 1620, 1650, 2070
SfcI CTRYAG 8 cut(s) 864, 984, 1104, 1224, 1344, 1653, 1863, 1983
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 7 cut(s) 263, 297, 331, 363, 379, 1596, 2202
SsiI CCGC 3 cut(s) 1354, 1633, 1663
SspMI CTAG 3 cut(s) 240, 426, 2069
StyD4I CCNGG 2 cut(s) 316, 582
StyI CCWWGG 1 cut(s) 2017
TaaI ACNGT 2 cut(s) 478, 1225
TaqI TCGA 6 cut(s) 14, 44, 74, 104, 1854, 2237
TasI AATT 7 cut(s) 263, 297, 331, 363, 379, 1596, 2202
Tru1I TTAA 3 cut(s) 300, 378, 2193
Tru9I TTAA 3 cut(s) 300, 378, 2193
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 3 cut(s) 140, 659, 2213
Tsp45I GTSAC 1 cut(s) 247
TspGWI ACGGA 1 cut(s) 1858
VspI ATTAAT 2 cut(s) 300, 378
XapI RAATTY 1 cut(s) 1596
XbaI TCTAGA 1 cut(s) 2068
XceI RCATGY 1 cut(s) 659
XspI CTAG 3 cut(s) 240, 426, 2069
Zsp2I ATGCAT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.