Rmu_sc0000276.1_g000064

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000276.1
N/A
Physical Location & Seq
Forward (+)
210647 .. 211000
354 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 354 bp
atgtcgaagccaaagcttgactttcctatccttgactcaactggcacggaatatcatagtttggtcactgatgttgagaaccatctcacttcaaaaaggatcctacccgtaattcaagcaccaaatcccgagctcatatttgagcgtacggctacaaataatgccaccgttctcatcttgatgagacgccacatagataaatcactccgattgaagtacatggcaatcaaggatgctagagaattatgggttgtgctagaagagcgatttggtaatgttaaggacaccctccttcccgacttgaaagttcaatggagcaatctacgattcgccgacttcaagtctgtagcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

117

Amino Acids

13.53

Weight (kDa)

9.0

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 94, 107
AcyI GRCGYC 1 cut(s) 187
AfaI GTAC 2 cut(s) 148, 218
AgsI TTSAA 6 cut(s) 93, 116, 214, 304, 311, 340
AhdI GACNNNNNGTC 1 cut(s) 340
AjuI GAANNNNNNNTTGG 2 cut(s) 252, 284
AluBI AGCT 2 cut(s) 16, 133
AluI AGCT 2 cut(s) 16, 133
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 2 cut(s) 94, 107
Ama87I CYCGRG 1 cut(s) 128
AvaI CYCGRG 1 cut(s) 128
BamHI GGATCC 1 cut(s) 99
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 135
BccI CCATC 1 cut(s) 90
BceAI ACGGC 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 2 cut(s) 237, 257
BfmI CTRYAG 1 cut(s) 345
BmeRI GACNNNNNGTC 1 cut(s) 340
BmeT110I CYCGRG 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 101
BmsI GCATC 1 cut(s) 223
BsaHI GRCGYC 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 238
BseNI ACTGG 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 128
BsiWI CGTACG 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 178
BsmBI CGTCTC 1 cut(s) 178
BsoBI CYCGRG 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 101
BspPI GGATC 2 cut(s) 94, 107
BspQI GCTCTTC 1 cut(s) 255
BsrI ACTGG 1 cut(s) 46
BssMI GATC 1 cut(s) 99
BssNI GRCGYC 1 cut(s) 187
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 255
BstACI GRCGYC 1 cut(s) 187
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 66
CseI GACGC 1 cut(s) 195
Csp6I GTAC 2 cut(s) 147, 217
CviAII CATG 1 cut(s) 220
CviJI RGCY 4 cut(s) 10, 16, 133, 152
CviKI_1 RGCY 4 cut(s) 10, 16, 133, 152
CviQI GTAC 2 cut(s) 147, 217
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
DriI GACNNNNNGTC 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 255
Eam1105I GACNNNNNGTC 1 cut(s) 340
EarI CTCTTC 1 cut(s) 255
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 135
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 1 cut(s) 223
FaiI YATR 5 cut(s) 57, 137, 194, 221, 247
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 1 cut(s) 219
FokI GGATG 1 cut(s) 245
FriOI GRGCYC 1 cut(s) 135
FspBI CTAG 2 cut(s) 237, 257
HgaI GACGC 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 187
Hin1II CATG 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 2 cut(s) 35, 327
Hpy188I TCNGA 1 cut(s) 209
Hpy188III TCNNGA 3 cut(s) 128, 178, 296
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
Hsp92I GRCGYC 1 cut(s) 187
Hsp92II CATG 1 cut(s) 223
Kzo9I GATC 1 cut(s) 99
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 315
LpnPI CCDG 1 cut(s) 27
LweI GCATC 1 cut(s) 223
MaeI CTAG 2 cut(s) 237, 257
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 1 cut(s) 272
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 2 cut(s) 111, 242
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 1 cut(s) 299
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 262
NdeII GATC 1 cut(s) 99
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 64
PciSI GCTCTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 327
Pfl23II CGTACG 1 cut(s) 146
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp124BI GAGCTC 1 cut(s) 135
PspLI CGTACG 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 2 cut(s) 148, 218
RsaNI GTAC 2 cut(s) 147, 217
RseI CAYNNNNRTG 1 cut(s) 179
SacI GAGCTC 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 1 cut(s) 279
Sau3AI GATC 1 cut(s) 99
SchI GAGTC 1 cut(s) 29
SduI GDGCHC 1 cut(s) 135
SetI ASST 2 cut(s) 18, 135
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 1 cut(s) 345
SmiMI CAYNNNNRTG 1 cut(s) 179
Sse9I AATT 2 cut(s) 111, 242
SspMI CTAG 2 cut(s) 237, 257
SstI GAGCTC 1 cut(s) 135
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 5
TasI AATT 2 cut(s) 111, 242
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 1 cut(s) 73
XspI CTAG 2 cut(s) 237, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.