Rmu_sc0000285.1_g000008

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000285.1
N/A
Physical Location & Seq
Reverse (-)
28345 .. 31673
3329 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 432 bp
atgagtcctcgaaggcatggacagagaggcggcggcggagaaagagaagaggaggagagtgagagaagacagaggaattgcttaaggggttcttggaagacagaggtgtcggtgaagggggaggtggacatggaggtgtcgagggagacgacgtcattgccgtcagaagaatcgatgggtcagggtcttttctggtccgactcaaagctagtgaggaagttgttgatgacccgacagagcgggatttatgacgacttggtggcgtttttttctactagtgggactgtgaagattgctcatgttaaacgcagcgctaacaatgctgcacatttaatggcagcgtatgcctccagtgctagtcaggaagttaggttcttttctactccatccttcttatccgctgcaattgcagctgaattaagtaccatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

143

Amino Acids

15.8

Weight (kDa)

7.92

Isoelectric Point (pI)

63.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 106
AatII GACGTC 1 cut(s) 155
AccBSI CCGCTC 1 cut(s) 240
AciI CCGC 5 cut(s) 30, 33, 36, 240, 399
AcyI GRCGYC 1 cut(s) 152
AfaI GTAC 1 cut(s) 424
AfeI AGCGCT 1 cut(s) 313
AflII CTTAAG 1 cut(s) 82
AhlI ACTAGT 1 cut(s) 275
AloI GAACNNNNNNTCC 2 cut(s) 356, 388
AluBI AGCT 2 cut(s) 208, 413
AluI AGCT 2 cut(s) 208, 413
Alw26I GTCTC 1 cut(s) 140
Aor51HI AGCGCT 1 cut(s) 313
ApeKI GCWGC 5 cut(s) 309, 323, 338, 401, 410
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 124
AvaII GGWCC 1 cut(s) 195
BbsI GAAGAC 2 cut(s) 73, 104
BbvI GCAGC 5 cut(s) 310, 321, 350, 388, 422
BccI CCATC 2 cut(s) 169, 394
BceAI ACGGC 1 cut(s) 145
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BcoDI GTCTC 1 cut(s) 140
BcuI ACTAGT 1 cut(s) 275
BfaI CTAG 3 cut(s) 209, 276, 357
BfoI RGCGCY 1 cut(s) 315
BfrI CTTAAG 1 cut(s) 82
BisI GCNGC 7 cut(s) 31, 34, 310, 324, 339, 402, 411
BlsI GCNGC 7 cut(s) 32, 35, 311, 325, 340, 403, 412
Bme18I GGWCC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 195
BpiI GAAGAC 2 cut(s) 73, 104
BpmI CTGGAG 1 cut(s) 334
Bsa29I ATCGAT 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bse1I ACTGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 155
BseCI ATCGAT 1 cut(s) 173
BseGI GGATG 1 cut(s) 386
BseMI GCAATG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 351
BseRI GAGGAG 2 cut(s) 65, 68
BseXI GCAGC 5 cut(s) 310, 321, 350, 388, 422
BsgI GTGCAG 1 cut(s) 309
BshVI ATCGAT 1 cut(s) 173
BslFI GGGAC 1 cut(s) 295
BsmAI GTCTC 1 cut(s) 140
BsmBI CGTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 295
BspACI CCGC 5 cut(s) 30, 33, 36, 240, 399
BspDI ATCGAT 1 cut(s) 173
BspTI CTTAAG 1 cut(s) 82
BsrBI CCGCTC 1 cut(s) 240
BsrDI GCAATG 1 cut(s) 155
BsrI ACTGG 1 cut(s) 351
BssNI GRCGYC 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 42
BstACI GRCGYC 1 cut(s) 152
BstAFI CTTAAG 1 cut(s) 82
BstAPI GCANNNNNTGC 1 cut(s) 344
BstF5I GGATG 1 cut(s) 386
BstH2I RGCGCY 1 cut(s) 315
BstHHI GCGC 1 cut(s) 314
BstMAI GTCTC 1 cut(s) 140
BstMWI GCNNNNNNNGC 5 cut(s) 320, 344, 353, 407, 410
BstV1I GCAGC 5 cut(s) 310, 321, 350, 388, 422
BstV2I GAAGAC 2 cut(s) 73, 104
Bsu15I ATCGAT 1 cut(s) 173
BsuTUI ATCGAT 1 cut(s) 173
BtsCI GGATG 1 cut(s) 386
BtsIMutI CAGTG 1 cut(s) 358
CfoI GCGC 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 195
ClaI ATCGAT 1 cut(s) 173
Csp6I GTAC 1 cut(s) 423
CviAII CATG 4 cut(s) 17, 130, 299, 427
CviJI RGCY 2 cut(s) 208, 413
CviKI_1 RGCY 2 cut(s) 208, 413
CviQI GTAC 1 cut(s) 423
DrdI GACNNNNNNGTC 1 cut(s) 106
DseDI GACNNNNNNGTC 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
EciI GGCGGA 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 195
Eco47III AGCGCT 1 cut(s) 313
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 4 cut(s) 20, 133, 302, 430
FaiI YATR 6 cut(s) 18, 131, 249, 300, 345, 428
FalI AAGNNNNNCTT 2 cut(s) 76, 108
FaqI GGGAC 1 cut(s) 295
FatI CATG 4 cut(s) 16, 129, 298, 426
FauI CCCGC 1 cut(s) 233
Fnu4HI GCNGC 7 cut(s) 31, 34, 310, 324, 339, 402, 411
FokI GGATG 1 cut(s) 373
Fsp4HI GCNGC 7 cut(s) 31, 34, 310, 324, 339, 402, 411
FspBI CTAG 3 cut(s) 209, 276, 357
GlaI GCGC 1 cut(s) 313
GluI GCNGC 7 cut(s) 31, 34, 310, 324, 339, 402, 411
GsuI CTGGAG 1 cut(s) 334
HaeII RGCGCY 1 cut(s) 315
HhaI GCGC 1 cut(s) 314
Hin1I GRCGYC 1 cut(s) 152
Hin1II CATG 4 cut(s) 20, 133, 302, 430
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HinfI GANTC 3 cut(s) 4, 170, 200
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 166, 199
Hpy188III TCNNGA 1 cut(s) 362
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 3 cut(s) 6, 109, 400
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 3 cut(s) 326, 404, 410
HpyF10VI GCNNNNNNNGC 5 cut(s) 320, 344, 353, 407, 410
HpySE526I ACGT 1 cut(s) 152
Hsp92I GRCGYC 1 cut(s) 152
Hsp92II CATG 4 cut(s) 20, 133, 302, 430
HspAI GCGC 1 cut(s) 312
LpnPI CCDG 4 cut(s) 167, 178, 347, 364
Lsp1109I GCAGC 5 cut(s) 310, 321, 350, 388, 422
MaeI CTAG 3 cut(s) 209, 276, 357
MaeII ACGT 1 cut(s) 152
MbiI CCGCTC 1 cut(s) 240
MboII GAAGA 5 cut(s) 59, 78, 109, 179, 301
MfeI CAATTG 1 cut(s) 405
MluCI AATT 3 cut(s) 76, 405, 416
MlyI GAGTC 2 cut(s) 13, 194
MmeI TCCRAC 1 cut(s) 222
MseI TTAA 4 cut(s) 83, 303, 332, 419
MslI CAYNNNNRTG 1 cut(s) 134
MspA1I CMGCKG 2 cut(s) 401, 413
MspCI CTTAAG 1 cut(s) 82
MunI CAATTG 1 cut(s) 405
MwoI GCNNNNNNNGC 5 cut(s) 320, 344, 353, 407, 410
NlaIII CATG 4 cut(s) 20, 133, 302, 430
PcsI WCGNNNNNNNCGW 2 cut(s) 146, 158
PfeI GAWTC 1 cut(s) 170
PflFI GACNNNGTC 1 cut(s) 151
PkrI GCNGC 7 cut(s) 32, 35, 311, 325, 340, 403, 412
PleI GAGTC 2 cut(s) 12, 194
PpsI GAGTC 2 cut(s) 12, 194
PspPI GGNCC 1 cut(s) 195
PsyI GACNNNGTC 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 413
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 4 cut(s) 83, 303, 332, 419
SatI GCNGC 7 cut(s) 31, 34, 310, 324, 339, 402, 411
Sau96I GGNCC 1 cut(s) 195
SchI GAGTC 2 cut(s) 13, 194
SetI ASST 7 cut(s) 108, 126, 138, 155, 210, 374, 415
SinI GGWCC 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
SpeI ACTAGT 1 cut(s) 275
Sse9I AATT 3 cut(s) 76, 405, 416
SsiI CCGC 5 cut(s) 30, 33, 36, 240, 399
SspMI CTAG 3 cut(s) 209, 276, 357
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 1 cut(s) 155
TaqI TCGA 3 cut(s) 10, 140, 173
TasI AATT 3 cut(s) 76, 405, 416
TauI GCSGC 2 cut(s) 33, 36
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 4 cut(s) 83, 303, 332, 419
Tru9I TTAA 4 cut(s) 83, 303, 332, 419
TscAI CASTG 1 cut(s) 358
TseI GCWGC 5 cut(s) 309, 323, 338, 401, 410
TspRI CASTG 1 cut(s) 358
Tth111I GACNNNGTC 1 cut(s) 151
Vha464I CTTAAG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 195
XspI CTAG 3 cut(s) 209, 276, 357
ZraI GACGTC 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.