Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000288.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

47019 .. 47356

Gene Structure 338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

atgccgtcgccttctagtgctccatcgacaacttggtcctctgccaagattgcgactgggacggaatgcgcgaatgactttggttgggggaggccggtggcggttcgaagcggctccggtaaaaaatttgataggaagttgatagtgtttgctgaggctgaagaagaaagtactgattttgaggttcaattgaattcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0006082 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009697 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010817 GO:0016053 GO:0016999 GO:0017000 GO:0017144 GO:0018958 GO:0019438 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0043207 GO:0043436 GO:0043900 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0046189 GO:0046394 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080134 GO:1900150 GO:1900424 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

66

Amino Acids

7.07

Weight (kDa)

4.89

Isoelectric Point (pI)

64.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	34
AccII	CGCG	1 cut(s)	71
AciI	CCGC	2 cut(s)	101, 111
AcsI	RAATTY	2 cut(s)	125, 193
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	188, 193
Alw21I	GWGCWC	1 cut(s)	22
AoxI	GGCC	1 cut(s)	92
ApoI	RAATTY	2 cut(s)	125, 193
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	36
AsuII	TTCGAA	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	22
BbvCI	CCTCAGC	1 cut(s)	153
BccI	CCATC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	15
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
BmcAI	AGTACT	1 cut(s)	172
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	115
BmrI	ACTGGG	1 cut(s)	66
BmuI	ACTGGG	1 cut(s)	66
Bpu10I	CCTNAGC	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	106
BsaWI	WCCGGW	1 cut(s)	116
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	22
BsiSI	CCGG	2 cut(s)	95, 117
BslFI	GGGAC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	94
Bsp119I	TTCGAA	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	22
BspACI	CCGC	2 cut(s)	101, 111
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	71
BspHI	TCATGA	1 cut(s)	197
BspLI	GGNNCC	1 cut(s)	115
BspT104I	TTCGAA	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	61
BssAI	RCCGGY	1 cut(s)	94
BstBI	TTCGAA	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstUI	CGCG	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	94
CciI	TCATGA	1 cut(s)	197
CfoI	GCGC	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	1 cut(s)	198
CviJI	RGCY	3 cut(s)	94, 114, 158
CviKI_1	RGCY	3 cut(s)	94, 114, 158
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	1 cut(s)	153
DrdI	GACNNNNNNGTC	1 cut(s)	34
DseDI	GACNNNNNNGTC	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	193
FaeI	CATG	1 cut(s)	201
FaiI	YATR	1 cut(s)	199
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	1 cut(s)	197
Fnu4HI	GCNGC	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	2 cut(s)	95, 117
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	201
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HpaII	CCGG	2 cut(s)	95, 117
Hpy188III	TCNNGA	1 cut(s)	198
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	21
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	201
HspAI	GCGC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	25, 119
LpnPI	CCDG	3 cut(s)	42, 108, 130
MaeI	CTAG	1 cut(s)	15
MboII	GAAGA	2 cut(s)	173, 176
MfeI	CAATTG	1 cut(s)	188
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	3 cut(s)	125, 188, 193
MnlI	CCTC	4 cut(s)	49, 84, 148, 175
MspI	CCGG	2 cut(s)	95, 117
MunI	CAATTG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	71
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	201
NlaIV	GGNNCC	1 cut(s)	115
NspV	TTCGAA	1 cut(s)	106
PagI	TCATGA	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PctI	GAATGC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	36
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
SatI	GCNGC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	36
ScaI	AGTACT	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	1 cut(s)	186
SfuI	TTCGAA	1 cut(s)	106
SgeI	CNNG	7 cut(s)	27, 45, 58, 69, 82, 107, 129
SinI	GGWCC	1 cut(s)	36
Sse9I	AATT	3 cut(s)	125, 188, 193
SsiI	CCGC	2 cut(s)	101, 111
SspMI	CTAG	1 cut(s)	15
TaqI	TCGA	2 cut(s)	26, 106
TasI	AATT	3 cut(s)	125, 188, 193
TatI	WGTACW	1 cut(s)	170
TauI	GCSGC	1 cut(s)	114
TspDTI	ATGAA	1 cut(s)	186
TspGWI	ACGGA	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	2 cut(s)	125, 193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	30
XspI	CTAG	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.