Rmu_sc0000288.1_g000024

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000288.1
N/A
Physical Location & Seq
Forward (+)
84079 .. 84363
285 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 285 bp
atgataatggcagtatgccagcagccggtagcggtcgatattaagacgacagatgattttcagttttacactggtggagtattcagtaaagactgtggaaatgggttgatagaccactctatgaccattgttggaatgggggagactgatgacggcgttaagtactggaaactgaagaactcgtggggtcaggattggggtgaaggagggtacatgagaatgatcagaggaactagcaagcgagaggtcattgtttcatcaatgcgagagcttcttatcccataa
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

94

Amino Acids

10.53

Weight (kDa)

5.2

Isoelectric Point (pI)

11.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 4 - 81 1.9e-24 Papain family cysteine protease
Peptidase_C1_2 PF03051 31 - 74 2.3e-08 Peptidase C1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 194
AfaI GTAC 2 cut(s) 164, 212
AfiI CCNNNNNNNGG 1 cut(s) 25
AluBI AGCT 1 cut(s) 271
AluI AGCT 1 cut(s) 271
Alw26I GTCTC 1 cut(s) 137
ApeKI GCWGC 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 212
BauI CACGAG 1 cut(s) 181
BbvI GCAGC 1 cut(s) 34
BceAI ACGGC 1 cut(s) 169
BclI TGATCA 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 1 cut(s) 234
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
BmcAI AGTACT 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 2 cut(s) 76, 170
BseLI CCNNNNNNNGG 1 cut(s) 25
BseNI ACTGG 2 cut(s) 76, 170
BseXI GCAGC 1 cut(s) 34
Bsh1285I CGRYCG 1 cut(s) 36
BsiEI CGRYCG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 137
Bsp143I GATC 1 cut(s) 222
BspACI CCGC 1 cut(s) 32
BsrFI RCCGGY 1 cut(s) 25
BsrI ACTGG 2 cut(s) 76, 170
BssAI RCCGGY 1 cut(s) 25
BssMI GATC 1 cut(s) 222
BssSI CACGAG 1 cut(s) 181
Bst2BI CACGAG 1 cut(s) 181
Bst4CI ACNGT 1 cut(s) 95
BstC8I GCNNGC 2 cut(s) 20, 239
BstKTI GATC 1 cut(s) 225
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 1 cut(s) 222
BstMCI CGRYCG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 2 cut(s) 20, 239
Cfr10I RCCGGY 1 cut(s) 25
Csp6I GTAC 2 cut(s) 163, 211
CviAII CATG 1 cut(s) 214
CviJI RGCY 2 cut(s) 25, 271
CviKI_1 RGCY 2 cut(s) 25, 271
CviQI GTAC 2 cut(s) 163, 211
DpnI GATC 1 cut(s) 224
DpnII GATC 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 194
FaeI CATG 1 cut(s) 217
FaiI YATR 4 cut(s) 16, 122, 215, 283
FatI CATG 1 cut(s) 213
FbaI TGATCA 1 cut(s) 222
Fnu4HI GCNGC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 1 cut(s) 234
GluI GCNGC 1 cut(s) 23
HapII CCGG 1 cut(s) 26
Hin1II CATG 1 cut(s) 217
HpaII CCGG 1 cut(s) 26
HphI GGTGA 1 cut(s) 212
Hpy188I TCNGA 1 cut(s) 227
Hpy188III TCNNGA 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 1 cut(s) 95
Hsp92II CATG 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 222
Kzo9I GATC 1 cut(s) 222
LpnPI CCDG 5 cut(s) 32, 39, 57, 151, 176
Lsp1109I GCAGC 1 cut(s) 34
MaeI CTAG 1 cut(s) 234
MalI GATC 1 cut(s) 224
MboI GATC 1 cut(s) 222
MboII GAAGA 1 cut(s) 187
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 3 cut(s) 200, 221, 238
MseI TTAA 2 cut(s) 42, 159
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 1 cut(s) 26
NdeII GATC 1 cut(s) 222
NlaIII CATG 1 cut(s) 217
PkrI GCNGC 1 cut(s) 24
RsaI GTAC 2 cut(s) 164, 212
RsaNI GTAC 2 cut(s) 163, 211
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 2 cut(s) 42, 159
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 1 cut(s) 222
ScaI AGTACT 1 cut(s) 164
SetI ASST 2 cut(s) 249, 273
SmiMI CAYNNNNRTG 1 cut(s) 218
SsiI CCGC 1 cut(s) 32
SspMI CTAG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 1 cut(s) 36
TatI WGTACW 1 cut(s) 162
Tru1I TTAA 2 cut(s) 42, 159
Tru9I TTAA 2 cut(s) 42, 159
TscAI CASTG 1 cut(s) 76
TseI GCWGC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 246
TspRI CASTG 1 cut(s) 76
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
XspI CTAG 1 cut(s) 234
ZrmI AGTACT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.