Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000295.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

102897 .. 103259

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atggcagctcggaagcgagcttcaacaaactcgtcctcctcgactcaaaccaaaccaagcgatcgcgagccacccaaaacccaagaagcagcagcagaagcgccaatctcagcacccaagtctggtgtgattctgaagctgacggcgttgttctccgtcccctacttttacctggtcttgtaccattacaagattgagcaggagctcagaaattcgattctgatcaatgccgccctcagcctggcggcgttcttcgtcaccgttaagatgatccctgtggcttctagatacgttctcaggcgcaatctgtttggctacgatattaacaaaaagggtactcctcagggtactattaaagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003975 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006489 GO:0006490 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016740 GO:0016772 GO:0016780 GO:0019538 GO:0019637 GO:0031224 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046465 GO:0070085 GO:0071704 GO:0090407 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Glycos_transf_4

Protein Analysis

120

Amino Acids

13.26

Weight (kDa)

10.1

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	66
AciI	CCGC	2 cut(s)	231, 245
AclWI	GGATC	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	3 cut(s)	182, 337, 349
AfiI	CCNNNNNNNGG	2 cut(s)	122, 241
AgsI	TTSAA	1 cut(s)	24
AjnI	CCWGG	2 cut(s)	171, 240
AluBI	AGCT	4 cut(s)	8, 20, 139, 205
AluI	AGCT	4 cut(s)	8, 20, 139, 205
Alw21I	GWGCWC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	265
ApeKI	GCWGC	3 cut(s)	5, 89, 92
ApoI	RAATTY	1 cut(s)	211
AsiSI	GCGATCGC	1 cut(s)	64
AspLEI	GCGC	2 cut(s)	103, 303
AsuHPI	GGTGA	1 cut(s)	250
AxyI	CCTNAGG	1 cut(s)	342
BanII	GRGCYC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	207
BbvCI	CCTCAGC	1 cut(s)	236
BbvI	GCAGC	3 cut(s)	17, 101, 104
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	2 cut(s)	173, 242
BclI	TGATCA	1 cut(s)	222
BfaI	CTAG	1 cut(s)	285
BfoI	RGCGCY	1 cut(s)	104
BisI	GCNGC	5 cut(s)	6, 90, 93, 231, 246
BlsI	GCNGC	5 cut(s)	7, 91, 94, 232, 247
Bme1390I	CCNGG	2 cut(s)	173, 242
BmrFI	CCNGG	2 cut(s)	173, 242
Bpu10I	CCTNAGC	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 241
Bse21I	CCTNAGG	1 cut(s)	342
Bse8I	GATNNNNATC	1 cut(s)	221
BseBI	CCWGG	2 cut(s)	173, 242
BseJI	GATNNNNATC	1 cut(s)	221
BseLI	CCNNNNNNNGG	2 cut(s)	122, 241
BseMII	CTCAG	5 cut(s)	123, 220, 250, 310, 356
BseRI	GAGGAG	2 cut(s)	28, 330
BseXI	GCAGC	3 cut(s)	17, 101, 104
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	64
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	2 cut(s)	122, 241
BsmFI	GGGAC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	3 cut(s)	61, 222, 270
Bsp68I	TCGCGA	1 cut(s)	66
BspACI	CCGC	2 cut(s)	231, 245
BspCNI	CTCAG	5 cut(s)	122, 219, 249, 309, 355
BspFNI	CGCG	1 cut(s)	66
BspPI	GGATC	1 cut(s)	265
BssMI	GATC	3 cut(s)	61, 222, 270
Bst2UI	CCWGG	2 cut(s)	173, 242
Bst4CI	ACNGT	1 cut(s)	262
BstC8I	GCNNGC	2 cut(s)	18, 68
BstDEI	CTNAG	5 cut(s)	109, 206, 236, 296, 342
BstFNI	CGCG	1 cut(s)	66
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	2 cut(s)	103, 303
BstKTI	GATC	3 cut(s)	64, 225, 273
BstMBI	GATC	3 cut(s)	61, 222, 270
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	2 cut(s)	173, 242
BstSCI	CCNGG	2 cut(s)	171, 240
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	3 cut(s)	17, 101, 104
Bsu36I	CCTNAGG	1 cut(s)	342
BtuMI	TCGCGA	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	18, 68
CfoI	GCGC	2 cut(s)	103, 303
CsiI	ACCWGGT	1 cut(s)	171
Csp6I	GTAC	3 cut(s)	181, 336, 348
CviJI	RGCY	8 cut(s)	8, 20, 70, 139, 205, 240, 281, 315
CviKI_1	RGCY	8 cut(s)	8, 20, 70, 139, 205, 240, 281, 315
CviQI	GTAC	3 cut(s)	181, 336, 348
DdeI	CTNAG	5 cut(s)	109, 206, 236, 296, 342
DpnI	GATC	3 cut(s)	63, 224, 272
DpnII	GATC	3 cut(s)	61, 222, 270
Ecl136II	GAGCTC	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	155
Eco81I	CCTNAGG	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	205
EcoRII	CCWGG	2 cut(s)	171, 240
EcoT38I	GRGCYC	1 cut(s)	207
FaqI	GGGAC	1 cut(s)	143
FbaI	TGATCA	1 cut(s)	222
Fnu4HI	GCNGC	5 cut(s)	6, 90, 93, 231, 246
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	5 cut(s)	6, 90, 93, 231, 246
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	2 cut(s)	102, 302
GluI	GCNGC	5 cut(s)	6, 90, 93, 231, 246
HaeII	RGCGCY	1 cut(s)	104
HhaI	GCGC	2 cut(s)	103, 303
Hin6I	GCGC	2 cut(s)	101, 301
HinP1I	GCGC	2 cut(s)	101, 301
HinfI	GANTC	3 cut(s)	43, 130, 217
HphI	GGTGA	1 cut(s)	250
Hpy188I	TCNGA	4 cut(s)	12, 135, 209, 222
Hpy188III	TCNNGA	2 cut(s)	65, 285
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	5 cut(s)	109, 206, 236, 296, 342
HpySE526I	ACGT	1 cut(s)	291
HspAI	GCGC	2 cut(s)	101, 301
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	61, 222, 270
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	9 cut(s)	108, 158, 185, 185, 227, 254, 283, 288, 329
Lsp1109I	GCAGC	3 cut(s)	17, 101, 104
MabI	ACCWGGT	1 cut(s)	171
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	3 cut(s)	63, 224, 272
MboI	GATC	3 cut(s)	61, 222, 270
MboII	GAAGA	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	1 cut(s)	211
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	4 cut(s)	46, 49, 245, 351
MseI	TTAA	3 cut(s)	264, 324, 354
MspR9I	CCNGG	2 cut(s)	173, 242
MvaI	CCWGG	2 cut(s)	173, 242
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	3 cut(s)	61, 222, 270
NmuCI	GTSAC	1 cut(s)	256
NruI	TCGCGA	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	130, 217
PkrI	GCNGC	5 cut(s)	7, 91, 94, 232, 247
Ple19I	CGATCG	1 cut(s)	64
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Psp124BI	GAGCTC	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	171, 240
PspGI	CCWGG	2 cut(s)	171, 240
PvuI	CGATCG	1 cut(s)	64
RgaI	GCGATCGC	1 cut(s)	64
RruI	TCGCGA	1 cut(s)	66
RsaI	GTAC	3 cut(s)	182, 337, 349
RsaNI	GTAC	3 cut(s)	181, 336, 348
SacI	GAGCTC	1 cut(s)	207
SaqAI	TTAA	3 cut(s)	264, 324, 354
SatI	GCNGC	5 cut(s)	6, 90, 93, 231, 246
Sau3AI	GATC	3 cut(s)	61, 222, 270
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	2 cut(s)	173, 242
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	6 cut(s)	10, 22, 141, 174, 207, 294
SexAI	ACCWGGT	1 cut(s)	171
SfaAI	GCGATCGC	1 cut(s)	64
SgfI	GCGATCGC	1 cut(s)	64
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	2 cut(s)	231, 245
SspMI	CTAG	1 cut(s)	285
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	2 cut(s)	171, 240
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	41, 215
TasI	AATT	1 cut(s)	211
TauI	GCSGC	2 cut(s)	233, 248
TfiI	GAWTC	2 cut(s)	130, 217
Tru1I	TTAA	3 cut(s)	264, 324, 354
Tru9I	TTAA	3 cut(s)	264, 324, 354
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	3 cut(s)	5, 89, 92
Tsp45I	GTSAC	1 cut(s)	256
TspGWI	ACGGA	1 cut(s)	145
XapI	RAATTY	1 cut(s)	211
XbaI	TCTAGA	1 cut(s)	284
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.