Rmu_sc0000295.1_g000039

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000295.1
N/A
Physical Location & Seq
Reverse (-)
218222 .. 219403
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1182 bp
atgtcttggagttgtggcacaagcgactcaatagactgcctggttctagaccaacctctcaatagttattgttataatgctatccttcgtgggttttgccaaaaaggcgaaacttgtaaagctctaaaattgttggaggaaatgaagagctacgggatggtgccagatgtttattgctacaccatattgatagatggattttgcaaggaaggggatatagagaaagctcttgctttgtttgaggaaatggagctttgtaaaataaaaccttctttggttagctatagctcactcatatacggtctttgcaaacttggattgatagatcatatgttagatatatatcgtaatctggagtctgccggtgtgtgccctgatgctatcacttgcactctcattgttgatgggtattgcagggaagggcgcttggaggaagccttgagatttatttacaagatgtatcatcaaggcataagccctaactcgtatacttataatgcagtcctcaacagtttgtgcaagcaaggaaagccagaaaaagcatgggaactaatccctcaaatgcttaaaaggaatatactcccagaagttgcaaattataatactcttataaatggctttggaaaacagttgaattcaaagaaggcctgcatggtgtatggaggaatgctcaaagctggtgtcatgcccaatacagtcacatatacaatccttatgaatatactctgccatagaggcaaaatatatgaagcttgtaacatgttcaaggaaatgagtgaaaggggtttggctgcagatgtgatttcttatacatctctaattgctgggttttgtaggatgggagacatgaagaaggcttgggtactgttcaaagaaatgttgagcaaaaaccatttgcccaatgctatcacgtatacgtgtttaatagatggtttttgcaagtcctctcgcatggattatgccagtttcttgtttgaggaaatgaagaacaaaaatgttactcctgatctggtgacttacactgttctcatcattgggtactgtaggctccggaatattgatagagcaattcagttatttgatgaaatgaagcacagtggtatctcaggggatggttttgccaatgaagctttggggctttacaccaaagattggtttgtttacaaaagattagaaagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

393

Amino Acids

44.55

Weight (kDa)

7.35

Isoelectric Point (pI)

35.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 20 - 126 3e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 21 - 69 1.9e-17 PPR repeat family
PPR_1 PF12854 21 - 49 3.5e-07 PPR repeat
MRP-S27 PF10037 27 - 83 8.5e-07 Mitochondrial 28S ribosomal protein S27
PPR_3 PF13812 43 - 99 9.6e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 52 - 84 1.3e-14 PPR repeat
PPR PF01535 59 - 86 5.5e-09 PPR repeat
PPR_2 PF13041 60 - 104 1.5e-14 PPR repeat family
PPR_2 PF13041 93 - 139 3e-08 PPR repeat family
TPR_24 PF23276 113 - 221 5.5e-09 Fungal tetratrico peptide repeats
PPR_3 PF13812 114 - 171 3.9e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 122 - 153 5.6e-08 PPR repeat
PPR_2 PF13041 125 - 174 2.8e-15 PPR repeat family
PPR_long PF17177 143 - 246 1.4e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 157 - 188 2.2e-08 PPR repeat
PPR_2 PF13041 161 - 195 2.3e-09 PPR repeat family
PPR PF01535 163 - 193 8.3e-07 PPR repeat
TPR_24 PF23276 167 - 293 1.2e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 187 - 242 4.8e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 195 - 244 1.9e-13 PPR repeat family
PPR_1 PF12854 227 - 259 7.6e-09 PPR repeat
PPR_2 PF13041 230 - 279 8.6e-16 PPR repeat family
PPR PF01535 233 - 263 3.1e-07 PPR repeat
TPR_24 PF23276 251 - 362 8.1e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 254 - 310 4.1e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 261 - 293 9.1e-11 PPR repeat
PPR_2 PF13041 266 - 314 2.4e-19 PPR repeat family
PPR PF01535 268 - 297 1.6e-08 PPR repeat
PPR_long PF17177 289 - 369 5.5e-09 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 296 - 329 1e-10 PPR repeat
PPR_2 PF13041 300 - 349 3.1e-17 PPR repeat family
PPR PF01535 303 - 333 2.9e-07 PPR repeat
PPR_3 PF13812 324 - 369 8.9e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 331 - 364 2.2e-11 PPR repeat
PPR PF01535 338 - 368 4.9e-09 PPR repeat
PPR_2 PF13041 338 - 371 3.3e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 75, 495, 600, 611
AccB1I GGYRCC 1 cut(s) 160
AccB7I CCANNNNNTGG 1 cut(s) 1152
AccI GTMKAC 2 cut(s) 488, 914
AccIII TCCGGA 1 cut(s) 1050
AcsI RAATTY 1 cut(s) 634
AfaI GTAC 2 cut(s) 864, 1040
AfiI CCNNNNNNNGG 1 cut(s) 1152
AflIII ACRYGT 2 cut(s) 759, 917
AgsI TTSAA 4 cut(s) 634, 639, 766, 871
AjnI CCWGG 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 837
Aor13HI TCCGGA 1 cut(s) 1050
AoxI GGCC 1 cut(s) 645
ApeKI GCWGC 1 cut(s) 791
ApoI RAATTY 1 cut(s) 634
ArsI GACNNNNNNTTYG 2 cut(s) 666, 698
AspLEI GCGC 1 cut(s) 426
AsuHPI GGTGA 1 cut(s) 1024
BaeGI GKGCMC 1 cut(s) 374
BaeI ACNNNNGTAYC 2 cut(s) 1084, 1117
BanI GGYRCC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 778
BccI CCATC 6 cut(s) 151, 188, 398, 832, 923, 1106
BciT130I CCWGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 837
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 3 cut(s) 283, 792, 1042
BfoI RGCGCY 1 cut(s) 427
BglI GCCNNNNNGGC 2 cut(s) 105, 735
BisI GCNGC 1 cut(s) 792
BlsI GCNGC 1 cut(s) 793
Bme1390I CCNGG 1 cut(s) 41
BmiI GGNNCC 2 cut(s) 162, 1049
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 367
BplI GAGNNNNNCTC 2 cut(s) 654, 686
BpmI CTGGAG 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 460
BsaAI YACGTR 2 cut(s) 912, 918
BsaBI GATNNNNATC 1 cut(s) 342
BsaWI WCCGGW 1 cut(s) 1050
Bsc4I CCNNNNNNNGG 1 cut(s) 1152
Bse118I RCCGGY 1 cut(s) 362
Bse1I ACTGG 1 cut(s) 963
Bse8I GATNNNNATC 1 cut(s) 342
BseAI TCCGGA 1 cut(s) 1050
BseBI CCWGG 1 cut(s) 41
BseGI GGATG 3 cut(s) 162, 843, 1117
BseJI GATNNNNATC 1 cut(s) 342
BseLI CCNNNNNNNGG 1 cut(s) 1152
BseMII CTCAG 1 cut(s) 1119
BseNI ACTGG 1 cut(s) 963
BseSI GKGCMC 1 cut(s) 374
BseXI GCAGC 1 cut(s) 778
BseYI CCCAGC 1 cut(s) 824
BshFI GGCC 1 cut(s) 647
BshNI GGYRCC 1 cut(s) 160
BsiSI CCGG 2 cut(s) 363, 1051
BslI CCNNNNNNNGG 1 cut(s) 1152
BsmAI GTCTC 1 cut(s) 837
BsmI GAATGC 1 cut(s) 672
BsnI GGCC 1 cut(s) 647
Bsp1286I GDGCHC 1 cut(s) 374
Bsp13I TCCGGA 1 cut(s) 1050
Bsp143I GATC 2 cut(s) 325, 1006
BspANI GGCC 1 cut(s) 647
BspCNI CTCAG 1 cut(s) 1118
BspEI TCCGGA 1 cut(s) 1050
BspLI GGNNCC 2 cut(s) 162, 1049
BspMAI CTGCAG 1 cut(s) 796
BspQI GCTCTTC 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 160
BsrFI RCCGGY 1 cut(s) 362
BsrI ACTGG 1 cut(s) 963
BssAI RCCGGY 1 cut(s) 362
BssMI GATC 2 cut(s) 325, 1006
BssNAI GTATAC 2 cut(s) 489, 915
Bst1107I GTATAC 2 cut(s) 489, 915
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 8 cut(s) 302, 512, 630, 697, 867, 1024, 1043, 1097
Bst6I CTCTTC 1 cut(s) 140
BstBAI YACGTR 2 cut(s) 912, 918
BstC8I GCNNGC 2 cut(s) 521, 649
BstDEI CTNAG 1 cut(s) 1105
BstF5I GGATG 3 cut(s) 162, 843, 1117
BstH2I RGCGCY 1 cut(s) 427
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 2 cut(s) 328, 1009
BstMAI GTCTC 1 cut(s) 837
BstMBI GATC 2 cut(s) 325, 1006
BstMWI GCNNNNNNNGC 4 cut(s) 105, 529, 735, 1127
BstNI CCWGG 1 cut(s) 41
BstNSI RCATGY 1 cut(s) 763
BstSCI CCNGG 1 cut(s) 39
BstSFI CTRYAG 3 cut(s) 283, 792, 1042
BstSLI GKGCMC 1 cut(s) 374
BstV1I GCAGC 1 cut(s) 778
BstZ17I GTATAC 2 cut(s) 489, 915
BsuRI GGCC 1 cut(s) 647
BtsCI GGATG 3 cut(s) 162, 843, 1117
BtsIMutI CAGTG 2 cut(s) 1020, 1102
Cac8I GCNNGC 2 cut(s) 521, 649
CfoI GCGC 1 cut(s) 426
Cfr10I RCCGGY 1 cut(s) 362
Csp6I GTAC 2 cut(s) 863, 1039
CviAII CATG 6 cut(s) 543, 652, 685, 760, 847, 952
CviQI GTAC 2 cut(s) 863, 1039
DdeI CTNAG 1 cut(s) 1105
DpnI GATC 2 cut(s) 327, 1008
DpnII GATC 2 cut(s) 325, 1006
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Eco147I AGGCCT 1 cut(s) 647
EcoRI GAATTC 1 cut(s) 634
EcoRII CCWGG 1 cut(s) 39
FaeI CATG 6 cut(s) 546, 655, 688, 763, 850, 955
FatI CATG 6 cut(s) 542, 651, 684, 759, 846, 951
FauNDI CATATG 1 cut(s) 330
FblI GTMKAC 2 cut(s) 488, 914
Fnu4HI GCNGC 1 cut(s) 792
FokI GGATG 3 cut(s) 169, 850, 1124
Fsp4HI GCNGC 1 cut(s) 792
FspBI CTAG 1 cut(s) 47
GlaI GCGC 1 cut(s) 425
GluI GCNGC 1 cut(s) 792
GsaI CCCAGC 1 cut(s) 828
GsuI CTGGAG 1 cut(s) 374
HaeII RGCGCY 1 cut(s) 427
HaeIII GGCC 1 cut(s) 647
HapII CCGG 2 cut(s) 363, 1051
HhaI GCGC 1 cut(s) 426
Hin1II CATG 6 cut(s) 546, 655, 688, 763, 850, 955
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HindIII AAGCTT 2 cut(s) 750, 1128
HinfI GANTC 2 cut(s) 26, 356
HpaII CCGG 2 cut(s) 363, 1051
HphI GGTGA 1 cut(s) 1024
Hpy166II GTNNAC 3 cut(s) 489, 915, 1162
Hpy188III TCNNGA 4 cut(s) 47, 353, 1004, 1051
Hpy8I GTNNAC 3 cut(s) 489, 915, 1162
HpyAV CCTTC 6 cut(s) 95, 203, 279, 413, 637, 847
HpyCH4III ACNGT 8 cut(s) 302, 512, 630, 697, 867, 1024, 1043, 1097
HpyCH4IV ACGT 2 cut(s) 911, 917
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 529, 735, 1127
HpyF3I CTNAG 1 cut(s) 1105
HpySE526I ACGT 2 cut(s) 911, 917
Hsp92II CATG 6 cut(s) 546, 655, 688, 763, 850, 955
HspAI GCGC 1 cut(s) 424
Kpn2I TCCGGA 1 cut(s) 1050
Kzo9I GATC 2 cut(s) 325, 1006
LguI GCTCTTC 1 cut(s) 140
LmnI GCTCC 2 cut(s) 250, 1053
Lsp1109I GCAGC 1 cut(s) 778
LweI GCATC 1 cut(s) 367
MaeI CTAG 1 cut(s) 47
MaeII ACGT 2 cut(s) 911, 917
MaeIII GTNAC 4 cut(s) 697, 755, 997, 1012
MalI GATC 2 cut(s) 327, 1008
MboI GATC 2 cut(s) 325, 1006
MboII GAAGA 3 cut(s) 157, 862, 997
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 5 cut(s) 128, 595, 634, 819, 1068
MlyI GAGTC 2 cut(s) 20, 365
MmeI TCCRAC 1 cut(s) 114
MroI TCCGGA 1 cut(s) 1050
MseI TTAA 2 cut(s) 567, 923
MspI CCGG 2 cut(s) 363, 1051
MspR9I CCNGG 1 cut(s) 41
Mva1269I GAATGC 1 cut(s) 672
MvaI CCWGG 1 cut(s) 41
MwoI GCNNNNNNNGC 4 cut(s) 105, 529, 735, 1127
NdeI CATATG 1 cut(s) 330
NdeII GATC 2 cut(s) 325, 1006
NlaIII CATG 6 cut(s) 546, 655, 688, 763, 850, 955
NlaIV GGNNCC 2 cut(s) 162, 1049
NmuCI GTSAC 2 cut(s) 697, 1012
NspI RCATGY 1 cut(s) 763
PceI AGGCCT 1 cut(s) 647
PciI ACATGT 1 cut(s) 759
PciSI GCTCTTC 1 cut(s) 140
PctI GAATGC 1 cut(s) 672
PflMI CCANNNNNTGG 1 cut(s) 1152
PkrI GCNGC 1 cut(s) 793
PleI GAGTC 2 cut(s) 20, 364
PpsI GAGTC 2 cut(s) 20, 364
Ppu21I YACGTR 2 cut(s) 912, 918
PscI ACATGT 1 cut(s) 759
PsiI TTATAA 4 cut(s) 75, 495, 600, 611
Psp6I CCWGG 1 cut(s) 39
PspFI CCCAGC 1 cut(s) 824
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 2 cut(s) 162, 1049
PstI CTGCAG 1 cut(s) 796
RsaI GTAC 2 cut(s) 864, 1040
RsaNI GTAC 2 cut(s) 863, 1039
SapI GCTCTTC 1 cut(s) 140
SaqAI TTAA 2 cut(s) 567, 923
SatI GCNGC 1 cut(s) 792
Sau3AI GATC 2 cut(s) 325, 1006
SchI GAGTC 2 cut(s) 20, 365
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 1 cut(s) 374
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 3 cut(s) 283, 792, 1042
SmlI CTYRAG 1 cut(s) 439
SmoI CTYRAG 1 cut(s) 439
Sse9I AATT 5 cut(s) 128, 595, 634, 819, 1068
SseBI AGGCCT 1 cut(s) 647
SspI AATATT 1 cut(s) 1057
SspMI CTAG 1 cut(s) 47
StuI AGGCCT 1 cut(s) 647
StyD4I CCNGG 1 cut(s) 39
TaaI ACNGT 8 cut(s) 302, 512, 630, 697, 867, 1024, 1043, 1097
TaiI ACGT 2 cut(s) 914, 920
TasI AATT 5 cut(s) 128, 595, 634, 819, 1068
Tru1I TTAA 2 cut(s) 567, 923
Tru9I TTAA 2 cut(s) 567, 923
TscAI CASTG 2 cut(s) 1027, 1102
TseFI GTSAC 2 cut(s) 697, 1012
TseI GCWGC 1 cut(s) 791
Tsp45I GTSAC 2 cut(s) 697, 1012
TspDTI ATGAA 8 cut(s) 158, 731, 762, 863, 998, 1098, 1103, 1140
TspRI CASTG 2 cut(s) 1027, 1102
Van91I CCANNNNNTGG 1 cut(s) 1152
XapI RAATTY 1 cut(s) 634
XbaI TCTAGA 1 cut(s) 46
XceI RCATGY 1 cut(s) 763
XcmI CCANNNNNNNNNTGG 2 cut(s) 540, 1129
XmiI GTMKAC 2 cut(s) 488, 914
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.