Rmu_sc0000303.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000303.1
N/A
Physical Location & Seq
Reverse (-)
48883 .. 55248
6366 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 654 bp
atgcttgactcaacaggctcggattaccacagttgggtaaccgatgttgagaatcatctcacttccaagggaatattacccataatccaggcacctaacccggatcttgtgttcaaccgaacatctacaaagcatgctcaagcagttatcttgatgcgacaccatatggacaaggcactcagattggagtatatgtcgatcaaggatgcaagagagttatgggtagcgctagaagagcgctttggcaatgtccaagattctctcttccctgacttgaaggttcaatggaacaatctgcgctttgctgacttcaagtctgtttttcatgctggttacaataacctctcaggaatacttccaatagagatgtataatgctaccacacttgaagaaatttcattacgtgctaattctctttctggagtccttggtgaggaactaccagctgatcttggcaatgttgaagactttgatggattccagaatcttcgacttttggatttgagtgattgtgagctcactggtcaaatacccttatggttatctcagctcaaaaagttacaaatgttgaattctaatagattatcagggtcaataccacttggtcggggactcttccaatgctctttcatattggcttggaaaggaacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

217

Amino Acids

24.51

Weight (kDa)

5.33

Isoelectric Point (pI)

34.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 2 cut(s) 393, 571
AfeI AGCGCT 2 cut(s) 228, 239
AfiI CCNNNNNNNGG 2 cut(s) 34, 433
AgsI TTSAA 7 cut(s) 115, 277, 284, 313, 389, 464, 571
AhdI GACNNNNNGTC 1 cut(s) 313
AjnI CCWGG 1 cut(s) 87
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 3 cut(s) 446, 517, 550
AluI AGCT 3 cut(s) 446, 517, 550
Alw21I GWGCWC 1 cut(s) 519
AlwI GGATC 1 cut(s) 111
Aor51HI AGCGCT 2 cut(s) 228, 239
ApoI RAATTY 2 cut(s) 393, 571
AspLEI GCGC 3 cut(s) 229, 240, 300
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 443
BanI GGYRCC 1 cut(s) 91
BanII GRGCYC 1 cut(s) 519
BbsI GAAGAC 1 cut(s) 471
Bbv12I GWGCWC 1 cut(s) 519
BccI CCATC 1 cut(s) 467
BciT130I CCWGG 1 cut(s) 89
BcnI CCSGG 1 cut(s) 101
BfaI CTAG 1 cut(s) 230
BfoI RGCGCY 2 cut(s) 230, 241
Bme1390I CCNGG 2 cut(s) 89, 101
BmeRI GACNNNNNGTC 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 93, 649
BmrFI CCNGG 2 cut(s) 89, 101
BmsI GCATC 2 cut(s) 144, 196
BpiI GAAGAC 1 cut(s) 471
BpmI CTGGAG 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 101
BsaAI YACGTR 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 66, 427
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 433
Bse1I ACTGG 1 cut(s) 526
Bse3DI GCAATG 2 cut(s) 253, 463
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 2 cut(s) 66, 427
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 2 cut(s) 34, 433
BseMI GCAATG 2 cut(s) 253, 463
BseMII CTCAG 3 cut(s) 193, 360, 560
BseNI ACTGG 1 cut(s) 526
BshNI GGYRCC 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 519
BsiSI CCGG 1 cut(s) 101
BslFI GGGAC 1 cut(s) 624
BslI CCNNNNNNNGG 2 cut(s) 34, 433
BsmFI GGGAC 1 cut(s) 624
Bsp1286I GDGCHC 1 cut(s) 519
Bsp143I GATC 3 cut(s) 103, 198, 448
BspCNI CTCAG 3 cut(s) 192, 359, 559
BspLI GGNNCC 2 cut(s) 93, 649
BspPI GGATC 1 cut(s) 111
BspQI GCTCTTC 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 91
BsrDI GCAATG 2 cut(s) 253, 463
BsrI ACTGG 1 cut(s) 526
BssECI CCNNGG 2 cut(s) 66, 427
BssMI GATC 3 cut(s) 103, 198, 448
BssT1I CCWWGG 2 cut(s) 66, 427
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 3 cut(s) 228, 269, 620
BstBAI YACGTR 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 3 cut(s) 179, 346, 546
BstEII GGTNACC 1 cut(s) 37
BstENI CCTNNNNNAGG 1 cut(s) 431
BstF5I GGATG 1 cut(s) 211
BstH2I RGCGCY 2 cut(s) 230, 241
BstHHI GCGC 3 cut(s) 229, 240, 300
BstKTI GATC 3 cut(s) 106, 201, 451
BstMBI GATC 3 cut(s) 103, 198, 448
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 137
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 2 cut(s) 87, 99
BstV2I GAAGAC 1 cut(s) 471
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 519
Cac8I GCNNGC 1 cut(s) 135
CfoI GCGC 3 cut(s) 229, 240, 300
CviAII CATG 2 cut(s) 134, 326
CviJI RGCY 5 cut(s) 18, 446, 517, 550, 638
CviKI_1 RGCY 5 cut(s) 18, 446, 517, 550, 638
DdeI CTNAG 3 cut(s) 179, 346, 546
DpnI GATC 3 cut(s) 105, 200, 450
DpnII GATC 3 cut(s) 103, 198, 448
DriI GACNNNNNGTC 1 cut(s) 313
Eam1104I CTCTTC 3 cut(s) 228, 269, 620
Eam1105I GACNNNNNGTC 1 cut(s) 313
EarI CTCTTC 3 cut(s) 228, 269, 620
Ecl136II GAGCTC 1 cut(s) 517
Eco130I CCWWGG 2 cut(s) 66, 427
Eco24I GRGCYC 1 cut(s) 519
Eco47III AGCGCT 2 cut(s) 228, 239
Eco53kI GAGCTC 1 cut(s) 517
Eco91I GGTNACC 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 517
EcoNI CCTNNNNNAGG 1 cut(s) 431
EcoO65I GGTNACC 1 cut(s) 37
EcoRI GAATTC 1 cut(s) 571
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 2 cut(s) 66, 427
EcoT38I GRGCYC 1 cut(s) 519
ErhI CCWWGG 2 cut(s) 66, 427
FaeI CATG 2 cut(s) 137, 329
FaqI GGGAC 1 cut(s) 624
FatI CATG 2 cut(s) 133, 325
FauNDI CATATG 1 cut(s) 165
FokI GGATG 1 cut(s) 218
FriOI GRGCYC 1 cut(s) 519
FspBI CTAG 1 cut(s) 230
GlaI GCGC 3 cut(s) 228, 239, 299
GsuI CTGGAG 1 cut(s) 441
HaeII RGCGCY 2 cut(s) 230, 241
HapII CCGG 1 cut(s) 101
HhaI GCGC 3 cut(s) 229, 240, 300
Hin1II CATG 2 cut(s) 137, 329
Hin6I GCGC 3 cut(s) 227, 238, 298
HinP1I GCGC 3 cut(s) 227, 238, 298
HinfI GANTC 7 cut(s) 8, 52, 257, 423, 477, 484, 612
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 443
Hpy188I TCNGA 2 cut(s) 22, 182
Hpy188III TCNNGA 4 cut(s) 151, 348, 420, 481
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 403
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 3 cut(s) 179, 346, 546
HpySE526I ACGT 1 cut(s) 403
Hsp92II CATG 2 cut(s) 137, 329
HspAI GCGC 3 cut(s) 227, 238, 298
Kzo9I GATC 3 cut(s) 103, 198, 448
LguI GCTCTTC 1 cut(s) 228
LweI GCATC 2 cut(s) 144, 196
MaeI CTAG 1 cut(s) 230
MaeII ACGT 1 cut(s) 403
MaeIII GTNAC 3 cut(s) 37, 332, 558
MalI GATC 3 cut(s) 105, 200, 450
MboI GATC 3 cut(s) 103, 198, 448
MboII GAAGA 6 cut(s) 245, 256, 401, 476, 479, 607
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 519
MluCI AATT 3 cut(s) 393, 409, 571
MlyI GAGTC 3 cut(s) 2, 432, 606
MnlI CCTC 2 cut(s) 353, 427
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 2 cut(s) 89, 101
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 235
NciI CCSGG 1 cut(s) 101
NdeI CATATG 1 cut(s) 165
NdeII GATC 3 cut(s) 103, 198, 448
NlaIII CATG 2 cut(s) 137, 329
NlaIV GGNNCC 2 cut(s) 93, 649
NspI RCATGY 1 cut(s) 137
PaeI GCATGC 1 cut(s) 137
PciSI GCTCTTC 1 cut(s) 228
PfeI GAWTC 4 cut(s) 52, 257, 477, 484
PleI GAGTC 3 cut(s) 2, 431, 606
PpsI GAGTC 3 cut(s) 2, 431, 606
Ppu21I YACGTR 1 cut(s) 404
Psp124BI GAGCTC 1 cut(s) 519
Psp6I CCWGG 1 cut(s) 87
PspEI GGTNACC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 2 cut(s) 93, 649
PsuI RGATCY 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 446
SacI GAGCTC 1 cut(s) 519
SapI GCTCTTC 1 cut(s) 228
Sau3AI GATC 3 cut(s) 103, 198, 448
SchI GAGTC 3 cut(s) 2, 432, 606
ScrFI CCNGG 2 cut(s) 89, 101
SduI GDGCHC 1 cut(s) 519
SetI ASST 8 cut(s) 97, 282, 345, 406, 448, 519, 552, 653
SfaNI GCATC 2 cut(s) 144, 196
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
SphI GCATGC 1 cut(s) 137
Sse9I AATT 3 cut(s) 393, 409, 571
SspI AATATT 1 cut(s) 75
SspMI CTAG 1 cut(s) 230
SstI GAGCTC 1 cut(s) 519
StyD4I CCNGG 2 cut(s) 87, 99
StyI CCWWGG 2 cut(s) 66, 427
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 406
TaqI TCGA 2 cut(s) 197, 490
TasI AATT 3 cut(s) 393, 409, 571
TfiI GAWTC 4 cut(s) 52, 257, 477, 484
TscAI CASTG 1 cut(s) 526
TspDTI ATGAA 3 cut(s) 314, 387, 619
TspRI CASTG 1 cut(s) 526
XagI CCTNNNNNAGG 1 cut(s) 431
XapI RAATTY 2 cut(s) 393, 571
XceI RCATGY 1 cut(s) 137
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.