Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000309.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

243787 .. 244296

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atggcgaagaacgccgagacagcggaggcgatcgcgtcggtagcgaatggtgagacagtgcttgagatatggggaagcatcgtcaatggcttcaccgtgccgcttaaggaacatgacaagctgttcttgatgagggtacttgttcccttccacaagacaaaaggaatgcaggcttatcataggcaattggcttattatgtgtctcactttgtccagaaggaggccgtgctcggtggccgattgctgttagagggattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0008287 GO:0019220 GO:0019222 GO:0031323 GO:0032991 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051174 GO:0065007 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

B56

Protein Analysis

86

Amino Acids

9.62

Weight (kDa)

8.09

Isoelectric Point (pI)

15.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B56	PF01603	19 - 77	2.2e-17	Protein phosphatase 2A regulatory B subunit (B56 family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	35
AciI	CCGC	2 cut(s)	23, 101
AcoI	YGGCCR	1 cut(s)	235
AfaI	GTAC	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	220
AflII	CTTAAG	1 cut(s)	104
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	3 cut(s)	11, 47, 207
AoxI	GGCC	2 cut(s)	222, 235
AsiSI	GCGATCGC	1 cut(s)	33
AsuHPI	GGTGA	2 cut(s)	62, 85
Bbv12I	GWGCWC	1 cut(s)	231
BceAI	ACGGC	1 cut(s)	209
BcoDI	GTCTC	3 cut(s)	11, 47, 207
BfrI	CTTAAG	1 cut(s)	104
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
BmsI	GCATC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	220
Bsh1236I	CGCG	1 cut(s)	35
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	224, 237
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	3 cut(s)	11, 47, 207
BsmI	GAATGC	1 cut(s)	171
BsnI	GGCC	2 cut(s)	224, 237
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	2 cut(s)	23, 101
BspANI	GGCC	2 cut(s)	224, 237
BspFNI	CGCG	1 cut(s)	35
BspTI	CTTAAG	1 cut(s)	104
BssMI	GATC	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	58, 97
BstAFI	CTTAAG	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	171
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	3 cut(s)	11, 47, 207
BstMBI	GATC	1 cut(s)	30
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 20, 41
BstUI	CGCG	1 cut(s)	35
BsuRI	GGCC	2 cut(s)	224, 237
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	171
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	137
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	6 cut(s)	90, 121, 173, 191, 224, 237
CviKI_1	RGCY	6 cut(s)	90, 121, 173, 191, 224, 237
CviQI	GTAC	1 cut(s)	137
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	235
FaeI	CATG	1 cut(s)	116
FaiI	YATR	4 cut(s)	70, 114, 180, 198
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FatI	CATG	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	224, 237
HgaI	GACGC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	116
HinfI	GANTC	1 cut(s)	255
HphI	GGTGA	2 cut(s)	62, 85
Hpy188I	TCNGA	1 cut(s)	260
Hpy188III	TCNNGA	2 cut(s)	127, 214
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	157, 211
HpyCH4III	ACNGT	2 cut(s)	58, 97
HpyCH4V	TGCA	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 20, 41
Hsp92II	CATG	1 cut(s)	116
Kzo9I	GATC	1 cut(s)	30
LpnPI	CCDG	2 cut(s)	155, 227
LweI	GCATC	1 cut(s)	87
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	1 cut(s)	19
MfeI	CAATTG	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	1 cut(s)	185
MnlI	CCTC	4 cut(s)	19, 126, 214, 244
MseI	TTAA	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	23
MspCI	CTTAAG	1 cut(s)	104
MunI	CAATTG	1 cut(s)	185
Mva1269I	GAATGC	1 cut(s)	171
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	3 cut(s)	11, 20, 41
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	116
NmeAIII	GCCGAG	1 cut(s)	40
PctI	GAATGC	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	102
Ple19I	CGATCG	1 cut(s)	33
PvuI	CGATCG	1 cut(s)	33
RgaI	GCGATCGC	1 cut(s)	33
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	1 cut(s)	123
SfaAI	GCGATCGC	1 cut(s)	33
SfaNI	GCATC	1 cut(s)	87
SgfI	GCGATCGC	1 cut(s)	33
SmlI	CTYRAG	2 cut(s)	62, 104
SmoI	CTYRAG	2 cut(s)	62, 104
Sse9I	AATT	1 cut(s)	185
SsiI	CCGC	2 cut(s)	23, 101
TaaI	ACNGT	2 cut(s)	58, 97
TasI	AATT	1 cut(s)	185
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	255
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	63
TspRI	CASTG	1 cut(s)	63
Vha464I	CTTAAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.