Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000311.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1796 .. 4335

Gene Structure 2540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgaacgcgttggaccctgcagagcgtaggtatttagaggatgaggatactcctactattaagacgtttaagggtgcaacaattggattggttaccggagctaattttgggacctgctacctgcattataggtcgaagagagactttctaaatggagctgtcggaggttttgttgctggatcaactgttctaggttacaaaggaaggagcattccaactgcaatttctgctggagccgccttggcagtcacttccgcactcattgaagctgggggccagaccacaagaatcgataatggcaaggagtactatccttataccaccaaaaaaagatccactgctgatccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0016020 GO:0019866 GO:0019867 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046983 GO:0051179 GO:0051641 GO:0070469 GO:0070727 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

116

Amino Acids

12.33

Weight (kDa)

9.07

Isoelectric Point (pI)

28.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	122, 129
AccII	CGCG	1 cut(s)	8
AciI	CCGC	2 cut(s)	237, 255
AclWI	GGATC	3 cut(s)	187, 327, 338
AfaI	GTAC	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	6
AgsI	TTSAA	1 cut(s)	266
AjuI	GAANNNNNNNTTGG	2 cut(s)	208, 240
AloI	GAACNNNNNNTCC	2 cut(s)	171, 203
AluBI	AGCT	3 cut(s)	101, 158, 269
AluI	AGCT	3 cut(s)	101, 158, 269
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	3 cut(s)	187, 327, 338
AoxI	GGCC	1 cut(s)	274
AspS9I	GGNCC	3 cut(s)	13, 111, 274
AvaII	GGWCC	2 cut(s)	13, 111
BciVI	GTATCC	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	18
BfuAI	ACCTGC	2 cut(s)	122, 129
BfuI	GTATCC	1 cut(s)	40
BglI	GCCNNNNNGGC	1 cut(s)	242
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
BmcAI	AGTACT	1 cut(s)	308
Bme18I	GGWCC	2 cut(s)	13, 111
BmgT120I	GGNCC	3 cut(s)	13, 111, 274
BmiI	GGNNCC	4 cut(s)	15, 112, 235, 275
BpmI	CTGGAG	1 cut(s)	252
Bsa29I	ATCGAT	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	95
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	46
BseYI	CCCAGC	1 cut(s)	269
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	276
BshVI	ATCGAT	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	276
Bsp143I	GATC	3 cut(s)	179, 332, 343
BspACI	CCGC	2 cut(s)	237, 255
BspANI	GGCC	1 cut(s)	276
BspDI	ATCGAT	1 cut(s)	291
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	4 cut(s)	15, 112, 235, 275
BspMAI	CTGCAG	1 cut(s)	22
BspMI	ACCTGC	2 cut(s)	122, 129
BspPI	GGATC	3 cut(s)	187, 327, 338
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	3 cut(s)	179, 332, 343
BssT1I	CCWWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	131
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstEII	GGTNACC	1 cut(s)	91
BstF5I	GGATG	1 cut(s)	46
BstFNI	CGCG	1 cut(s)	8
BstKTI	GATC	3 cut(s)	182, 335, 346
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	3 cut(s)	179, 332, 343
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 236, 242
BstPI	GGTNACC	1 cut(s)	91
BstSFI	CTRYAG	1 cut(s)	18
BstUI	CGCG	1 cut(s)	8
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
Bsu15I	ATCGAT	1 cut(s)	291
BsuI	GTATCC	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	276
BsuTUI	ATCGAT	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	46
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	336
BveI	ACCTGC	2 cut(s)	122, 129
Cfr13I	GGNCC	3 cut(s)	13, 111, 274
ClaI	ATCGAT	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	307
CviJI	RGCY	5 cut(s)	101, 158, 236, 269, 276
CviKI_1	RGCY	5 cut(s)	101, 158, 236, 269, 276
CviQI	GTAC	1 cut(s)	307
DpnI	GATC	3 cut(s)	181, 334, 345
DpnII	GATC	3 cut(s)	179, 332, 343
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	240
Eco47I	GGWCC	2 cut(s)	13, 111
Eco91I	GGTNACC	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	111
EcoO65I	GGTNACC	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaiI	YATR	3 cut(s)	129, 318, 349
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FaqI	GGGAC	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	1 cut(s)	237
GsaI	CCCAGC	1 cut(s)	273
GsuI	CTGGAG	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	276
HapII	CCGG	1 cut(s)	96
HinfI	GANTC	1 cut(s)	288
HpaII	CCGG	1 cut(s)	96
Hpy188I	TCNGA	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	198
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	4 cut(s)	20, 77, 124, 221
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 236, 242
HpySE526I	ACGT	1 cut(s)	65
Kzo9I	GATC	3 cut(s)	179, 332, 343
LmnI	GCTCC	4 cut(s)	98, 155, 207, 233
LpnPI	CCDG	8 cut(s)	30, 109, 127, 134, 162, 216, 255, 290
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	3 cut(s)	91, 194, 247
MalI	GATC	3 cut(s)	181, 334, 345
MboI	GATC	3 cut(s)	179, 332, 343
MboII	GAAGA	1 cut(s)	148
MfeI	CAATTG	1 cut(s)	81
MflI	RGATCY	1 cut(s)	332
MluCI	AATT	3 cut(s)	81, 103, 222
MluI	ACGCGT	1 cut(s)	6
MmeI	TCCRAC	2 cut(s)	142, 239
MnlI	CCTC	3 cut(s)	31, 37, 158
MseI	TTAA	2 cut(s)	60, 69
MspI	CCGG	1 cut(s)	96
MunI	CAATTG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	210
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	227, 236, 242
NdeII	GATC	3 cut(s)	179, 332, 343
NlaIV	GGNNCC	4 cut(s)	15, 112, 235, 275
NmuCI	GTSAC	1 cut(s)	247
PctI	GAATGC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	288
PkrI	GCNGC	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	111
Psp5II	RGGWCCY	1 cut(s)	111
PspEI	GGTNACC	1 cut(s)	91
PspFI	CCCAGC	1 cut(s)	269
PspN4I	GGNNCC	4 cut(s)	15, 112, 235, 275
PspPI	GGNCC	3 cut(s)	13, 111, 274
PspPPI	RGGWCCY	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	332
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SaqAI	TTAA	2 cut(s)	60, 69
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	3 cut(s)	179, 332, 343
Sau96I	GGNCC	3 cut(s)	13, 111, 274
ScaI	AGTACT	1 cut(s)	308
SfcI	CTRYAG	1 cut(s)	18
SinI	GGWCC	2 cut(s)	13, 111
Sse9I	AATT	3 cut(s)	81, 103, 222
SsiI	CCGC	2 cut(s)	237, 255
SspMI	CTAG	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	2 cut(s)	134, 291
TasI	AATT	3 cut(s)	81, 103, 222
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	288
Tru1I	TTAA	2 cut(s)	60, 69
Tru9I	TTAA	2 cut(s)	60, 69
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	343
VpaK11BI	GGWCC	2 cut(s)	13, 111
XspI	CTAG	1 cut(s)	191
ZrmI	AGTACT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.