Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000312.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

51102 .. 51473

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgtacggattgcaatcagcggtggactacggggataagtccacggactacgccgacaaggcccttatgacgccggagaacctgatccttcctatggattaccagagcctgctctcctccgtagctttccgagaccatcgggtcccgatgatgttcggatccgacgccggcgacttgtactcggccatatcctccgtgccggagtttcggcgcggggaggaagatgtttttggacccatcaaagccaaaattgcttcccatccaagctaccctagactcattgaggcctacatcgattgccagaaggtgaaaccaaaccgtccatggttgattcaactattctgtctgagtggagtggagtgggggatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010073 GO:0010093 GO:0010094 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

123

Amino Acids

13.86

Weight (kDa)

5.03

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	80 - 103	8e-12	KNOX1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
AccII	CGCG	1 cut(s)	213
AciI	CCGC	2 cut(s)	20, 213
AclWI	GGATC	3 cut(s)	79, 153, 166
AcoI	YGGCCR	1 cut(s)	183
AcyI	GRCGYC	2 cut(s)	71, 165
AfaI	GTAC	2 cut(s)	5, 179
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	1 cut(s)	335
AjuI	GAANNNNNNNTTGG	2 cut(s)	213, 245
AluBI	AGCT	2 cut(s)	125, 267
AluI	AGCT	2 cut(s)	125, 267
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	3 cut(s)	79, 153, 166
AlwNI	CAGNNNCTG	1 cut(s)	109
AoxI	GGCC	3 cut(s)	60, 183, 285
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	3 cut(s)	61, 142, 233
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	2 cut(s)	142, 233
BamHI	GGATCC	1 cut(s)	158
BccI	CCATC	3 cut(s)	144, 245, 267
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	273
BglI	GCCNNNNNGGC	1 cut(s)	59
Bme18I	GGWCC	2 cut(s)	142, 233
BmgT120I	GGNCC	3 cut(s)	61, 142, 233
BmiI	GGNNCC	4 cut(s)	143, 144, 160, 235
Bsa29I	ATCGAT	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	13
BsaHI	GRCGYC	2 cut(s)	71, 165
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	42, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse118I	RCCGGY	1 cut(s)	167
Bse8I	GATNNNNATC	1 cut(s)	13
BseCI	ATCGAT	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	42, 323
BseGI	GGATG	2 cut(s)	259, 372
BseJI	GATNNNNATC	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	3 cut(s)	62, 185, 287
BshVI	ATCGAT	1 cut(s)	294
BsiSI	CCGG	3 cut(s)	74, 168, 200
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	3 cut(s)	62, 185, 287
Bso31I	GGTCTC	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	84, 158
Bsp19I	CCATGG	1 cut(s)	323
BspACI	CCGC	2 cut(s)	20, 213
BspANI	GGCC	3 cut(s)	62, 185, 287
BspCNI	CTCAG	1 cut(s)	339
BspDI	ATCGAT	1 cut(s)	294
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	4 cut(s)	143, 144, 160, 235
BspPI	GGATC	3 cut(s)	79, 153, 166
BspTNI	GGTCTC	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	42, 323
BssMI	GATC	2 cut(s)	84, 158
BssNI	GRCGYC	2 cut(s)	71, 165
BssT1I	CCWWGG	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	320
BstACI	GRCGYC	2 cut(s)	71, 165
BstC8I	GCNNGC	2 cut(s)	110, 169
BstDEI	CTNAG	1 cut(s)	347
BstDSI	CCRYGG	2 cut(s)	42, 323
BstF5I	GGATG	2 cut(s)	259, 372
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	2 cut(s)	87, 161
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	2 cut(s)	84, 158
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 251
BstUI	CGCG	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
Bsu15I	ATCGAT	1 cut(s)	294
BsuRI	GGCC	3 cut(s)	62, 185, 287
BsuTUI	ATCGAT	1 cut(s)	294
BtgI	CCRYGG	2 cut(s)	42, 323
BtsCI	GGATG	2 cut(s)	259, 372
Cac8I	GCNNGC	2 cut(s)	110, 169
CaiI	CAGNNNCTG	1 cut(s)	109
CfoI	GCGC	1 cut(s)	213
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	3 cut(s)	61, 142, 233
ClaI	ATCGAT	1 cut(s)	294
CseI	GACGC	2 cut(s)	79, 173
Csp6I	GTAC	2 cut(s)	4, 178
CviAII	CATG	1 cut(s)	324
CviJI	RGCY	7 cut(s)	62, 108, 125, 185, 245, 267, 287
CviKI_1	RGCY	7 cut(s)	62, 108, 125, 185, 245, 267, 287
CviQI	GTAC	2 cut(s)	4, 178
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	2 cut(s)	86, 160
DpnII	GATC	2 cut(s)	84, 158
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
EaeI	YGGCCR	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	323
Eco147I	AGGCCT	1 cut(s)	287
Eco31I	GGTCTC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	142, 233
EcoO109I	RGGNCCY	2 cut(s)	61, 142
EcoT14I	CCWWGG	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	1 cut(s)	327
FaiI	YATR	4 cut(s)	68, 95, 188, 325
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	1 cut(s)	323
FauI	CCCGC	1 cut(s)	206
FokI	GGATG	1 cut(s)	246
FspBI	CTAG	1 cut(s)	273
GlaI	GCGC	1 cut(s)	212
HaeIII	GGCC	3 cut(s)	62, 185, 287
HapII	CCGG	3 cut(s)	74, 168, 200
HgaI	GACGC	2 cut(s)	79, 173
HhaI	GCGC	1 cut(s)	213
Hin1I	GRCGYC	2 cut(s)	71, 165
Hin1II	CATG	1 cut(s)	327
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	276, 331
HpaII	CCGG	3 cut(s)	74, 168, 200
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	2 cut(s)	25, 42
Hpy188I	TCNGA	4 cut(s)	131, 158, 163, 348
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	2 cut(s)	25, 42
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	98, 298
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 251
HpyF3I	CTNAG	1 cut(s)	347
Hsp92I	GRCGYC	2 cut(s)	71, 165
Hsp92II	CATG	1 cut(s)	327
HspAI	GCGC	1 cut(s)	211
KflI	GGGWCCC	1 cut(s)	142
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	84, 158
LpnPI	CCDG	7 cut(s)	87, 95, 116, 122, 181, 213, 314
MaeI	CTAG	1 cut(s)	273
MalI	GATC	2 cut(s)	86, 160
MboI	GATC	2 cut(s)	84, 158
MboII	GAAGA	1 cut(s)	233
MflI	RGATCY	1 cut(s)	158
MluCI	AATT	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	270
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	4 cut(s)	127, 202, 211, 277
MreI	CGCCGGCG	1 cut(s)	167
MroNI	GCCGGC	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	3 cut(s)	74, 168, 200
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	59, 251
NaeI	GCCGGC	1 cut(s)	169
NcoI	CCATGG	1 cut(s)	323
NdeII	GATC	2 cut(s)	84, 158
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	327
NlaIV	GGNNCC	4 cut(s)	143, 144, 160, 235
NmeAIII	GCCGAG	1 cut(s)	161
PceI	AGGCCT	1 cut(s)	287
PdiI	GCCGGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
PpuMI	RGGWCCY	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	142
PspN4I	GGNNCC	4 cut(s)	143, 144, 160, 235
PspPI	GGNCC	3 cut(s)	61, 142, 233
PspPPI	RGGWCCY	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	158
RsaI	GTAC	2 cut(s)	5, 179
RsaNI	GTAC	2 cut(s)	4, 178
Sau3AI	GATC	2 cut(s)	84, 158
Sau96I	GGNCC	3 cut(s)	61, 142, 233
SchI	GAGTC	1 cut(s)	270
SetI	ASST	4 cut(s)	84, 127, 269, 309
SgrAI	CRCCGGYG	1 cut(s)	167
SinI	GGWCC	2 cut(s)	142, 233
Sse9I	AATT	1 cut(s)	249
SseBI	AGGCCT	1 cut(s)	287
SsiI	CCGC	2 cut(s)	20, 213
SspMI	CTAG	1 cut(s)	273
StuI	AGGCCT	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	1 cut(s)	320
TaqI	TCGA	1 cut(s)	294
TasI	AATT	1 cut(s)	249
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	331
TspGWI	ACGGA	4 cut(s)	21, 59, 109, 184
VpaK11BI	GGWCC	2 cut(s)	142, 233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	321
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.