Rmu_sc0000315.1_g000009

SAL1 phosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000315.1
N/A
Physical Location & Seq
Reverse (-)
27860 .. 29385
1526 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 546 bp
atgccgcttctttgcttttataattttctggctaaaccaggcccattcgcatcctacatcattttctttgcaaaacttggtgcaggaacatatatgcagccattggatggttcatcatcgctaaaggtgtatgtcagtgctactgaaaatcctgaagacgcctcattctttgagtcttatgaagcagcacactccttgcacgtcttgtctagcaccattaccaagaaacttggagtcaaagcaccgctagttagaattgacagccaggcaaagtatggggcactttccagaggagatggagcaatatatcttcgtttcccccataaaggatatcgcgagaaaatatgggatcatgctgctgggtgcattgttgtcactgaagctggtggtgtagtcacagatgctgccgaaaatccattggacatttcaaaagggagctatctggatcttgaaacaggcataattgttaccaaccagaaattgatgccatcactcttgaaggcagttaaagaatccttggaggaagagaaagtttcatctttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 ko00920 ko01100 ko01120 ko04070 map00562 map00920 map01100 map01120 map04070
Pfam Domains
Protein Families
Inositol_P

Protein Analysis

181

Amino Acids

19.64

Weight (kDa)

6.08

Isoelectric Point (pI)

27.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inositol_P PF00459 36 - 172 3.1e-20 Inositol monophosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 21
AccB7I CCANNNNNTGG 1 cut(s) 107
AccII CGCG 1 cut(s) 336
AciI CCGC 2 cut(s) 5, 245
AclWI GGATC 2 cut(s) 357, 453
AcuI CTGAAG 2 cut(s) 174, 399
AcyI GRCGYC 1 cut(s) 159
AfiI CCNNNNNNNGG 2 cut(s) 107, 326
AgsI TTSAA 3 cut(s) 429, 452, 499
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 2 cut(s) 37, 264
AluBI AGCT 2 cut(s) 383, 438
AluI AGCT 2 cut(s) 383, 438
AlwI GGATC 2 cut(s) 357, 453
AlwNI CAGNNNCTG 1 cut(s) 404
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 4 cut(s) 97, 185, 356, 404
AspS9I GGNCC 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 4 cut(s) 109, 197, 343, 391
BccI CCATC 3 cut(s) 101, 290, 496
BciT130I CCWGG 2 cut(s) 39, 266
BfaI CTAG 2 cut(s) 210, 248
BisI GCNGC 5 cut(s) 5, 98, 186, 357, 405
BlsI GCNGC 5 cut(s) 6, 99, 187, 358, 406
Bme1390I CCNGG 2 cut(s) 39, 266
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 41
BmrFI CCNGG 2 cut(s) 39, 266
BmsI GCATC 3 cut(s) 59, 391, 474
BpiI GAAGAC 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 516
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 326
BseBI CCWGG 2 cut(s) 39, 266
BseDI CCNNGG 1 cut(s) 516
BseGI GGATG 2 cut(s) 50, 112
BseLI CCNNNNNNNGG 2 cut(s) 107, 326
BseRI GAGGAG 1 cut(s) 306
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 4 cut(s) 109, 197, 343, 391
BseYI CCCAGC 1 cut(s) 359
BsgI GTGCAG 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 336
BshFI GGCC 1 cut(s) 42
BslI CCNNNNNNNGG 2 cut(s) 107, 326
BsnI GGCC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 2 cut(s) 349, 445
Bsp68I TCGCGA 1 cut(s) 336
BspACI CCGC 2 cut(s) 5, 245
BspANI GGCC 1 cut(s) 42
BspFNI CGCG 1 cut(s) 336
BspPI GGATC 2 cut(s) 357, 453
BssECI CCNNGG 1 cut(s) 516
BssMI GATC 2 cut(s) 349, 445
BssNI GRCGYC 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 516
Bst2UI CCWGG 2 cut(s) 39, 266
Bst6I CTCTTC 1 cut(s) 519
BstACI GRCGYC 1 cut(s) 159
BstF5I GGATG 2 cut(s) 50, 112
BstFNI CGCG 1 cut(s) 336
BstKTI GATC 2 cut(s) 352, 448
BstMBI GATC 2 cut(s) 349, 445
BstNI CCWGG 2 cut(s) 39, 266
BstSCI CCNGG 2 cut(s) 37, 264
BstSLI GKGCMC 1 cut(s) 283
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 4 cut(s) 109, 197, 343, 391
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
BsuRI GGCC 1 cut(s) 42
BtgZI GCGATG 1 cut(s) 102
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 2 cut(s) 50, 112
BtsIMutI CAGTG 2 cut(s) 142, 375
BtuMI TCGCGA 1 cut(s) 336
CaiI CAGNNNCTG 1 cut(s) 404
Cfr13I GGNCC 1 cut(s) 41
CseI GACGC 1 cut(s) 167
CviAII CATG 1 cut(s) 353
CviJI RGCY 6 cut(s) 32, 42, 100, 264, 383, 438
CviKI_1 RGCY 6 cut(s) 32, 42, 100, 264, 383, 438
DpnI GATC 2 cut(s) 351, 447
DpnII GATC 2 cut(s) 349, 445
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
Eco130I CCWWGG 1 cut(s) 516
Eco32I GATATC 1 cut(s) 332
Eco57I CTGAAG 2 cut(s) 174, 399
EcoRII CCWGG 2 cut(s) 37, 264
EcoRV GATATC 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 516
ErhI CCWWGG 1 cut(s) 516
FaeI CATG 1 cut(s) 356
FatI CATG 1 cut(s) 352
Fnu4HI GCNGC 5 cut(s) 5, 98, 186, 357, 405
FokI GGATG 2 cut(s) 37, 119
Fsp4HI GCNGC 5 cut(s) 5, 98, 186, 357, 405
FspBI CTAG 2 cut(s) 210, 248
GluI GCNGC 5 cut(s) 5, 98, 186, 357, 405
GsaI CCCAGC 1 cut(s) 363
HaeIII GGCC 1 cut(s) 42
HgaI GACGC 1 cut(s) 167
Hin1I GRCGYC 1 cut(s) 159
Hin1II CATG 1 cut(s) 356
HinfI GANTC 3 cut(s) 173, 234, 512
Hpy188III TCNNGA 6 cut(s) 152, 288, 335, 443, 449, 496
HpyAV CCTTC 1 cut(s) 493
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 5 cut(s) 71, 83, 97, 199, 366
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 1 cut(s) 159
Hsp92II CATG 1 cut(s) 356
Kzo9I GATC 2 cut(s) 349, 445
LmnI GCTCC 2 cut(s) 299, 435
Lsp1109I GCAGC 4 cut(s) 109, 197, 343, 391
LweI GCATC 3 cut(s) 59, 391, 474
MaeI CTAG 2 cut(s) 210, 248
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 3 cut(s) 373, 394, 466
MalI GATC 2 cut(s) 351, 447
MboI GATC 2 cut(s) 349, 445
MboII GAAGA 3 cut(s) 167, 302, 536
MflI RGATCY 1 cut(s) 445
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 4 cut(s) 22, 255, 462, 479
MlyI GAGTC 2 cut(s) 182, 243
MnlI CCTC 3 cut(s) 172, 284, 514
MseI TTAA 1 cut(s) 507
MslI CAYNNNNRTG 1 cut(s) 541
MspR9I CCNGG 2 cut(s) 39, 266
MvaI CCWGG 2 cut(s) 39, 266
MvnI CGCG 1 cut(s) 336
NdeII GATC 2 cut(s) 349, 445
NlaIII CATG 1 cut(s) 356
NmuCI GTSAC 2 cut(s) 373, 394
NruI TCGCGA 1 cut(s) 336
PfeI GAWTC 1 cut(s) 512
PflMI CCANNNNNTGG 1 cut(s) 107
PkrI GCNGC 5 cut(s) 6, 99, 187, 358, 406
PleI GAGTC 2 cut(s) 181, 242
PpsI GAGTC 2 cut(s) 181, 242
PsiI TTATAA 1 cut(s) 21
Psp6I CCWGG 2 cut(s) 37, 264
PspFI CCCAGC 1 cut(s) 359
PspGI CCWGG 2 cut(s) 37, 264
PspPI GGNCC 1 cut(s) 41
PstNI CAGNNNCTG 1 cut(s) 404
PsuI RGATCY 1 cut(s) 445
RruI TCGCGA 1 cut(s) 336
RseI CAYNNNNRTG 1 cut(s) 541
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 5 cut(s) 5, 98, 186, 357, 405
Sau3AI GATC 2 cut(s) 349, 445
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 2 cut(s) 182, 243
ScrFI CCNGG 2 cut(s) 39, 266
SduI GDGCHC 1 cut(s) 283
SetI ASST 4 cut(s) 129, 204, 385, 440
SfaNI GCATC 3 cut(s) 59, 391, 474
SmiMI CAYNNNNRTG 1 cut(s) 541
Sse9I AATT 4 cut(s) 22, 255, 462, 479
SsiI CCGC 2 cut(s) 5, 245
SspMI CTAG 2 cut(s) 210, 248
StyD4I CCNGG 2 cut(s) 37, 264
StyI CCWWGG 1 cut(s) 516
TaiI ACGT 1 cut(s) 204
TasI AATT 4 cut(s) 22, 255, 462, 479
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 512
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 2 cut(s) 142, 382
TseFI GTSAC 2 cut(s) 373, 394
TseI GCWGC 4 cut(s) 97, 185, 356, 404
Tsp45I GTSAC 2 cut(s) 373, 394
TspDTI ATGAA 3 cut(s) 102, 195, 525
TspRI CASTG 2 cut(s) 142, 382
Van91I CCANNNNNTGG 1 cut(s) 107
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
XspI CTAG 2 cut(s) 210, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.