Rmu_sc0000315.1_g000055
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000315.1
N/A
Physical Location & Seq
Reverse (-)
244644 .. 245577
934 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 408 bp
atgagtagattcaccggcctaagcagcgatcaccaatcgcttggtcccggagaacagaagcagatccatctgattggatttgggattgagggacagcagtgggtgtctttggtggtgaagcatacacatgggataaatgtacctcctctaatggttgaaaatgctgggaacagcagccatgctgcaatttcaagtctaaactgcccaccatttgtagcagttgaactatgccgggaacatttgggtgttcatccatgtgataagagaagaagcattagcgagtataggcctcttttccctgcaattgatttctcactgatagcgaataatgatgacattttgtggacgcctgacataagagagaagaatgaagaagttgcagctagaggactgaagtttttgaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

135

Amino Acids

14.96

Weight (kDa)

6.13

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 58
AcyI GRCGYC 1 cut(s) 347
AfaI GTAC 1 cut(s) 141
AgsI TTSAA 4 cut(s) 158, 192, 224, 403
AluBI AGCT 1 cut(s) 383
AluI AGCT 1 cut(s) 383
AlwI GGATC 1 cut(s) 58
AoxI GGCC 2 cut(s) 16, 287
ApeKI GCWGC 4 cut(s) 24, 174, 182, 380
AspS9I GGNCC 1 cut(s) 44
AsuC2I CCSGG 2 cut(s) 48, 233
AsuHPI GGTGA 3 cut(s) 4, 23, 127
AvaII GGWCC 1 cut(s) 44
BbvI GCAGC 4 cut(s) 36, 169, 186, 392
BccI CCATC 1 cut(s) 75
BcnI CCSGG 2 cut(s) 48, 233
BfaI CTAG 2 cut(s) 384, 406
BisI GCNGC 4 cut(s) 25, 175, 183, 381
BlsI GCNGC 4 cut(s) 26, 176, 184, 382
Bme1390I CCNGG 2 cut(s) 48, 233
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 48, 233
Bpu10I CCTNAGC 1 cut(s) 20
BpuMI CCSGG 2 cut(s) 48, 233
BsaHI GRCGYC 1 cut(s) 347
Bse118I RCCGGY 1 cut(s) 14
BseGI GGATG 1 cut(s) 250
BseRI GAGGAG 1 cut(s) 135
BseXI GCAGC 4 cut(s) 36, 169, 186, 392
BseYI CCCAGC 1 cut(s) 164
BshFI GGCC 2 cut(s) 18, 289
BsiSI CCGG 3 cut(s) 15, 48, 232
BslFI GGGAC 2 cut(s) 30, 105
BsmFI GGGAC 2 cut(s) 30, 105
BsnI GGCC 2 cut(s) 18, 289
Bsp143I GATC 2 cut(s) 28, 63
BspANI GGCC 2 cut(s) 18, 289
BspLI GGNNCC 1 cut(s) 46
BspPI GGATC 1 cut(s) 58
BsrFI RCCGGY 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 14
BssMI GATC 2 cut(s) 28, 63
BssNI GRCGYC 1 cut(s) 347
BstACI GRCGYC 1 cut(s) 347
BstDEI CTNAG 1 cut(s) 20
BstF5I GGATG 1 cut(s) 250
BstKTI GATC 2 cut(s) 31, 66
BstMBI GATC 2 cut(s) 28, 63
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstSCI CCNGG 2 cut(s) 46, 231
BstV1I GCAGC 4 cut(s) 36, 169, 186, 392
BstX2I RGATCY 1 cut(s) 63
BstXI CCANNNNNNTGG 2 cut(s) 41, 74
BstYI RGATCY 1 cut(s) 63
BsuRI GGCC 2 cut(s) 18, 289
BtsCI GGATG 1 cut(s) 250
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 2 cut(s) 104, 314
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 44
CseI GACGC 1 cut(s) 355
Csp6I GTAC 1 cut(s) 140
CviAII CATG 3 cut(s) 128, 179, 255
CviJI RGCY 4 cut(s) 18, 177, 289, 383
CviKI_1 RGCY 4 cut(s) 18, 177, 289, 383
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 1 cut(s) 20
DpnI GATC 2 cut(s) 30, 65
DpnII GATC 2 cut(s) 28, 63
Eco147I AGGCCT 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 44
FaeI CATG 3 cut(s) 131, 182, 258
FaiI YATR 7 cut(s) 123, 129, 180, 229, 256, 285, 356
FaqI GGGAC 2 cut(s) 30, 105
FatI CATG 3 cut(s) 127, 178, 254
Fnu4HI GCNGC 4 cut(s) 25, 175, 183, 381
FokI GGATG 1 cut(s) 237
Fsp4HI GCNGC 4 cut(s) 25, 175, 183, 381
FspBI CTAG 2 cut(s) 384, 406
GluI GCNGC 4 cut(s) 25, 175, 183, 381
GsaI CCCAGC 1 cut(s) 168
HaeIII GGCC 2 cut(s) 18, 289
HapII CCGG 3 cut(s) 15, 48, 232
HgaI GACGC 1 cut(s) 355
Hin1I GRCGYC 1 cut(s) 347
Hin1II CATG 3 cut(s) 131, 182, 258
HinfI GANTC 1 cut(s) 9
HpaII CCGG 3 cut(s) 15, 48, 232
HphI GGTGA 3 cut(s) 4, 23, 127
Hpy166II GTNNAC 1 cut(s) 345
Hpy188I TCNGA 1 cut(s) 72
Hpy8I GTNNAC 1 cut(s) 345
HpyCH4V TGCA 3 cut(s) 185, 302, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpyF3I CTNAG 1 cut(s) 20
Hsp92I GRCGYC 1 cut(s) 347
Hsp92II CATG 3 cut(s) 131, 182, 258
Kzo9I GATC 2 cut(s) 28, 63
LpnPI CCDG 6 cut(s) 28, 61, 150, 245, 312, 363
Lsp1109I GCAGC 4 cut(s) 36, 169, 186, 392
MaeI CTAG 2 cut(s) 384, 406
MalI GATC 2 cut(s) 30, 65
MboI GATC 2 cut(s) 28, 63
MboII GAAGA 3 cut(s) 279, 376, 383
MfeI CAATTG 1 cut(s) 303
MflI RGATCY 1 cut(s) 63
MluCI AATT 2 cut(s) 186, 303
MnlI CCTC 5 cut(s) 82, 153, 156, 300, 380
MslI CAYNNNNRTG 3 cut(s) 126, 243, 255
MspI CCGG 3 cut(s) 15, 48, 232
MspR9I CCNGG 2 cut(s) 48, 233
MunI CAATTG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 24
NciI CCSGG 2 cut(s) 48, 233
NdeII GATC 2 cut(s) 28, 63
NlaIII CATG 3 cut(s) 131, 182, 258
NlaIV GGNNCC 1 cut(s) 46
PceI AGGCCT 1 cut(s) 289
PfeI GAWTC 1 cut(s) 9
PfoI TCCNGGA 1 cut(s) 46
PkrI GCNGC 4 cut(s) 26, 176, 184, 382
PspFI CCCAGC 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 44
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 3 cut(s) 126, 243, 255
SatI GCNGC 4 cut(s) 25, 175, 183, 381
Sau3AI GATC 2 cut(s) 28, 63
Sau96I GGNCC 1 cut(s) 44
ScrFI CCNGG 2 cut(s) 48, 233
SetI ASST 2 cut(s) 145, 385
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 3 cut(s) 126, 243, 255
Sse9I AATT 2 cut(s) 186, 303
SseBI AGGCCT 1 cut(s) 289
SspMI CTAG 2 cut(s) 384, 406
StuI AGGCCT 1 cut(s) 289
StyD4I CCNGG 2 cut(s) 46, 231
TasI AATT 2 cut(s) 186, 303
TfiI GAWTC 1 cut(s) 9
TscAI CASTG 2 cut(s) 104, 321
TseI GCWGC 4 cut(s) 24, 174, 182, 380
TspDTI ATGAA 2 cut(s) 239, 384
TspRI CASTG 2 cut(s) 104, 321
VpaK11BI GGWCC 1 cut(s) 44
XspI CTAG 2 cut(s) 384, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.