Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000318.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

51577 .. 53666

Gene Structure 2090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atgagagatcctagtggcggtttgctgtgtgcaacttgtaccactaagacaccccagagatctaagatcaaagttgaccaccaccaaggtcctctctctctctatccttcccgatcttcaccaaggactccgccgccaccgccattatcaacctccaccacctcgccacctcacaataaccgctcattgaccgtgaaaaccttaagttcattctcatcatcctcctcatcgtcgtcgtcaccatcgttgcttcattcttcctctaccgaatccgccgctgcatccacgacgctcctgcccgagtctccagccgcggagtatctccggccaaattcgccaccgccaccgctgccgatcaagattggcaacctcagccgctgccaaacaactatgacgtccaactccagcccgcatcgctcctacttcattggatcgttcgactacctcgttgacgacgactccaaggtcggattgtccaatgccagaaaccgctggtctgatcagaaagaagaggtgattgttgttctcggcgagctcctgccggaggccagtctaggcgctgacgtggcctcgggaaagagctggcttaaagaattcgtgcatagactctccaactcttctctacgaagctccggcagattctttaccggtagtagccatcggagcaagataggcggaatgggagatcaggaagatcgggaaggagagagagagagaggaatttggtggtggtctggaagagaggggggagagagagagaagaaaagacccaaaaagaaaaagaaaaaagaaaatctgacattgagggtgttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

271

Amino Acids

29.68

Weight (kDa)

9.86

Isoelectric Point (pI)

63.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	464
AatII	GACGTC	1 cut(s)	398
AccBSI	CCGCTC	1 cut(s)	183
AccII	CGCG	1 cut(s)	314
AclWI	GGATC	2 cut(s)	2, 439
AcoI	YGGCCR	1 cut(s)	326
AcsI	RAATTY	3 cut(s)	331, 593, 720
AcyI	GRCGYC	1 cut(s)	395
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	2 cut(s)	17, 544
AflII	CTTAAG	1 cut(s)	202
AgeI	ACCGGT	1 cut(s)	647
AjiI	CACGTC	1 cut(s)	565
AluBI	AGCT	3 cut(s)	535, 582, 630
AluI	AGCT	3 cut(s)	535, 582, 630
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	2 cut(s)	2, 439
AlwNI	CAGNNNCTG	1 cut(s)	378
Ama87I	CYCGRG	2 cut(s)	299, 571
AoxI	GGCC	3 cut(s)	326, 546, 567
ApeKI	GCWGC	3 cut(s)	278, 349, 378
ApoI	RAATTY	3 cut(s)	331, 593, 720
AsiGI	ACCGGT	1 cut(s)	647
AspLEI	GCGC	1 cut(s)	560
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	3 cut(s)	111, 231, 526
AvaI	CYCGRG	2 cut(s)	299, 571
AvaII	GGWCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	537
BbvCI	CCTCAGC	1 cut(s)	371
BbvI	GCAGC	3 cut(s)	265, 336, 365
BccI	CCATC	2 cut(s)	250, 666
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	1 cut(s)	309
BfaI	CTAG	2 cut(s)	12, 554
BfoI	RGCGCY	1 cut(s)	561
BfrI	CTTAAG	1 cut(s)	202
BglII	AGATCT	1 cut(s)	59
BisI	GCNGC	7 cut(s)	134, 276, 279, 312, 350, 376, 379
BlsI	GCNGC	7 cut(s)	135, 277, 280, 313, 351, 377, 380
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	2 cut(s)	299, 571
BmgBI	CACGTC	1 cut(s)	565
BmgT120I	GGNCC	1 cut(s)	89
BmsI	GCATC	2 cut(s)	290, 421
BpmI	CTGGAG	2 cut(s)	291, 388
Bpu10I	CCTNAGC	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	395
BsaJI	CCNNGG	5 cut(s)	85, 122, 312, 462, 570
BsaWI	WCCGGW	1 cut(s)	647
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 544
Bse118I	RCCGGY	1 cut(s)	647
Bse1I	ACTGG	1 cut(s)	549
BseDI	CCNNGG	5 cut(s)	85, 122, 312, 462, 570
BseGI	GGATG	2 cut(s)	218, 281
BseLI	CCNNNNNNNGG	2 cut(s)	17, 544
BseMII	CTCAG	1 cut(s)	385
BseNI	ACTGG	1 cut(s)	549
BseRI	GAGGAG	1 cut(s)	214
BseXI	GCAGC	3 cut(s)	265, 336, 365
Bsh1236I	CGCG	1 cut(s)	314
BshFI	GGCC	3 cut(s)	328, 548, 569
BshTI	ACCGGT	1 cut(s)	647
BsiHKAI	GWGCWC	1 cut(s)	537
BsiHKCI	CYCGRG	2 cut(s)	299, 571
BsiSI	CCGG	4 cut(s)	325, 542, 633, 648
BslI	CCNNNNNNNGG	2 cut(s)	17, 544
BsmAI	GTCTC	1 cut(s)	309
BsnI	GGCC	3 cut(s)	328, 548, 569
BsoBI	CYCGRG	2 cut(s)	299, 571
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	9 cut(s)	7, 59, 66, 113, 354, 431, 499, 685, 694
BspANI	GGCC	3 cut(s)	328, 548, 569
BspCNI	CTCAG	1 cut(s)	384
BspFNI	CGCG	1 cut(s)	314
BspPI	GGATC	2 cut(s)	2, 439
BspTI	CTTAAG	1 cut(s)	202
BsrBI	CCGCTC	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	647
BsrI	ACTGG	1 cut(s)	549
BssAI	RCCGGY	1 cut(s)	647
BssECI	CCNNGG	5 cut(s)	85, 122, 312, 462, 570
BssMI	GATC	9 cut(s)	7, 59, 66, 113, 354, 431, 499, 685, 694
BssNI	GRCGYC	1 cut(s)	395
BssT1I	CCWWGG	3 cut(s)	85, 122, 462
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	3 cut(s)	504, 622, 733
BstACI	GRCGYC	1 cut(s)	395
BstAFI	CTTAAG	1 cut(s)	202
BstC8I	GCNNGC	3 cut(s)	410, 533, 584
BstDEI	CTNAG	3 cut(s)	45, 63, 371
BstDSI	CCRYGG	1 cut(s)	312
BstENI	CCTNNNNNAGG	1 cut(s)	542
BstF5I	GGATG	2 cut(s)	218, 281
BstFNI	CGCG	1 cut(s)	314
BstH2I	RGCGCY	1 cut(s)	561
BstHHI	GCGC	1 cut(s)	560
BstKTI	GATC	9 cut(s)	10, 62, 69, 116, 357, 434, 502, 688, 697
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	9 cut(s)	7, 59, 66, 113, 354, 431, 499, 685, 694
BstMWI	GCNNNNNNNGC	8 cut(s)	139, 334, 349, 372, 414, 566, 663, 672
BstUI	CGCG	1 cut(s)	314
BstV1I	GCAGC	3 cut(s)	265, 336, 365
BstX2I	RGATCY	2 cut(s)	7, 59
BstYI	RGATCY	2 cut(s)	7, 59
BsuRI	GGCC	3 cut(s)	328, 548, 569
BtgI	CCRYGG	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	398
BtrI	CACGTC	1 cut(s)	565
BtsCI	GGATG	2 cut(s)	218, 281
Cac8I	GCNNGC	3 cut(s)	410, 533, 584
CaiI	CAGNNNCTG	1 cut(s)	378
CfoI	GCGC	1 cut(s)	560
Cfr10I	RCCGGY	1 cut(s)	647
Cfr13I	GGNCC	1 cut(s)	89
Cfr42I	CCGCGG	1 cut(s)	315
CseI	GACGC	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	39
CspAI	ACCGGT	1 cut(s)	647
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	3 cut(s)	45, 63, 371
DpnI	GATC	9 cut(s)	9, 61, 68, 115, 356, 433, 501, 687, 696
DpnII	GATC	9 cut(s)	7, 59, 66, 113, 354, 431, 499, 685, 694
DrdI	GACNNNNNNGTC	1 cut(s)	464
DseDI	GACNNNNNNGTC	1 cut(s)	464
EaeI	YGGCCR	1 cut(s)	326
Eam1104I	CTCTTC	3 cut(s)	504, 622, 733
EarI	CTCTTC	3 cut(s)	504, 622, 733
EciI	GGCGGA	3 cut(s)	120, 262, 690
Ecl136II	GAGCTC	1 cut(s)	535
Eco130I	CCWWGG	3 cut(s)	85, 122, 462
Eco24I	GRGCYC	1 cut(s)	537
Eco47I	GGWCC	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	535
Eco88I	CYCGRG	2 cut(s)	299, 571
EcoICRI	GAGCTC	1 cut(s)	535
EcoNI	CCTNNNNNAGG	1 cut(s)	542
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRI	GAATTC	1 cut(s)	593
EcoT14I	CCWWGG	3 cut(s)	85, 122, 462
EcoT38I	GRGCYC	1 cut(s)	537
ErhI	CCWWGG	3 cut(s)	85, 122, 462
FaiI	YATR	2 cut(s)	392, 603
FauI	CCCGC	1 cut(s)	417
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	7 cut(s)	134, 276, 279, 312, 350, 376, 379
FokI	GGATG	2 cut(s)	205, 268
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	7 cut(s)	134, 276, 279, 312, 350, 376, 379
FspBI	CTAG	2 cut(s)	12, 554
GlaI	GCGC	1 cut(s)	559
GluI	GCNGC	7 cut(s)	134, 276, 279, 312, 350, 376, 379
GsuI	CTGGAG	2 cut(s)	291, 388
HaeII	RGCGCY	1 cut(s)	561
HaeIII	GGCC	3 cut(s)	328, 548, 569
HapII	CCGG	4 cut(s)	325, 542, 633, 648
HgaI	GACGC	1 cut(s)	298
HhaI	GCGC	1 cut(s)	560
Hin1I	GRCGYC	1 cut(s)	395
Hin6I	GCGC	1 cut(s)	558
HinP1I	GCGC	1 cut(s)	558
HincII	GTYRAC	2 cut(s)	76, 451
HindII	GTYRAC	2 cut(s)	76, 451
HinfI	GANTC	6 cut(s)	127, 269, 302, 458, 606, 639
HpaII	CCGG	4 cut(s)	325, 542, 633, 648
HphI	GGTGA	3 cut(s)	111, 231, 526
Hpy166II	GTNNAC	2 cut(s)	76, 451
Hpy188I	TCNGA	5 cut(s)	470, 499, 504, 663, 798
Hpy188III	TCNNGA	6 cut(s)	111, 358, 573, 689, 698, 735
Hpy8I	GTNNAC	2 cut(s)	76, 451
Hpy99I	CGWCG	4 cut(s)	235, 238, 292, 458
HpyAV	CCTTC	2 cut(s)	117, 695
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	2 cut(s)	395, 564
HpyCH4V	TGCA	3 cut(s)	32, 281, 601
HpyF10VI	GCNNNNNNNGC	8 cut(s)	139, 334, 349, 372, 414, 566, 663, 672
HpyF3I	CTNAG	3 cut(s)	45, 63, 371
HpySE526I	ACGT	2 cut(s)	395, 564
Hsp92I	GRCGYC	1 cut(s)	395
HspAI	GCGC	1 cut(s)	558
Ksp22I	TGATCA	1 cut(s)	499
KspI	CCGCGG	1 cut(s)	315
Kzo9I	GATC	9 cut(s)	7, 59, 66, 113, 354, 431, 499, 685, 694
LmnI	GCTCC	5 cut(s)	297, 422, 540, 635, 663
Lsp1109I	GCAGC	3 cut(s)	265, 336, 365
LweI	GCATC	2 cut(s)	290, 421
MaeI	CTAG	2 cut(s)	12, 554
MaeII	ACGT	2 cut(s)	395, 564
MaeIII	GTNAC	1 cut(s)	237
MalI	GATC	9 cut(s)	9, 61, 68, 115, 356, 433, 501, 687, 696
MbiI	CCGCTC	1 cut(s)	183
MboI	GATC	9 cut(s)	7, 59, 66, 113, 354, 431, 499, 685, 694
MboII	GAAGA	7 cut(s)	108, 249, 521, 609, 704, 750, 772
MflI	RGATCY	2 cut(s)	7, 59
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	3 cut(s)	331, 593, 720
MlyI	GAGTC	4 cut(s)	121, 311, 452, 600
MmeI	TCCRAC	3 cut(s)	423, 448, 636
MseI	TTAA	2 cut(s)	203, 588
MspA1I	CMGCKG	5 cut(s)	278, 314, 349, 378, 492
MspCI	CTTAAG	1 cut(s)	202
MspI	CCGG	4 cut(s)	325, 542, 633, 648
MvnI	CGCG	1 cut(s)	314
MwoI	GCNNNNNNNGC	8 cut(s)	139, 334, 349, 372, 414, 566, 663, 672
NdeII	GATC	9 cut(s)	7, 59, 66, 113, 354, 431, 499, 685, 694
NmeAIII	GCCGAG	1 cut(s)	507
NmuCI	GTSAC	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	3 cut(s)	242, 444, 453
PfeI	GAWTC	2 cut(s)	269, 639
PinAI	ACCGGT	1 cut(s)	647
PkrI	GCNGC	7 cut(s)	135, 277, 280, 313, 351, 377, 380
PleI	GAGTC	4 cut(s)	121, 310, 452, 600
PpsI	GAGTC	4 cut(s)	121, 310, 452, 600
PpuMI	RGGWCCY	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	89
PspPPI	RGGWCCY	1 cut(s)	89
PstNI	CAGNNNCTG	1 cut(s)	378
PsuI	RGATCY	2 cut(s)	7, 59
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
SacI	GAGCTC	1 cut(s)	537
SacII	CCGCGG	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	203, 588
SatI	GCNGC	7 cut(s)	134, 276, 279, 312, 350, 376, 379
Sau3AI	GATC	9 cut(s)	7, 59, 66, 113, 354, 431, 499, 685, 694
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	4 cut(s)	121, 311, 452, 600
SduI	GDGCHC	1 cut(s)	537
SfaNI	GCATC	2 cut(s)	290, 421
Sfr303I	CCGCGG	1 cut(s)	315
SgrBI	CCGCGG	1 cut(s)	315
SinI	GGWCC	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
Sse9I	AATT	3 cut(s)	331, 593, 720
SspMI	CTAG	2 cut(s)	12, 554
SstI	GAGCTC	1 cut(s)	537
StyI	CCWWGG	3 cut(s)	85, 122, 462
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	2 cut(s)	398, 567
TaqI	TCGA	1 cut(s)	438
TasI	AATT	3 cut(s)	331, 593, 720
TauI	GCSGC	4 cut(s)	136, 278, 314, 378
TfiI	GAWTC	2 cut(s)	269, 639
Tru1I	TTAA	2 cut(s)	203, 588
Tru9I	TTAA	2 cut(s)	203, 588
TseFI	GTSAC	1 cut(s)	237
TseI	GCWGC	3 cut(s)	278, 349, 378
Tsp45I	GTSAC	1 cut(s)	237
TspDTI	ATGAA	3 cut(s)	198, 242, 415
Vha464I	CTTAAG	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	89
XagI	CCTNNNNNAGG	1 cut(s)	542
XapI	RAATTY	3 cut(s)	331, 593, 720
XspI	CTAG	2 cut(s)	12, 554
ZraI	GACGTC	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.