Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000319.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

122551 .. 122913

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgtcagcatccacctctcaccacctcctcttatattcacctcctcctcgcttcaccctcttcttcaccaccacctcctcctcctcccccccccccccccccctcctctctcaaatgatcaaccccaaatacttcgcctcctcgtttttcttcgtttttctgaaggaggcgatcgtggtctacacgggcctatctccggcgaccttcttcacgctcctagctctgctattcaccgcttaccatgtcctttctgggctttttgggccgtctgagacccacaaccgccccaggagcttggaagagatgcagcatcttccgtcgccggtccagcttggcgagatcaccgccaaggagctcaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

120

Amino Acids

13.35

Weight (kDa)

8.13

Isoelectric Point (pI)

62.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	180
AciI	CCGC	3 cut(s)	234, 283, 345
AcuI	CTGAAG	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	4 cut(s)	221, 294, 331, 355
AluI	AGCT	4 cut(s)	221, 294, 331, 355
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	266
AoxI	GGCC	2 cut(s)	187, 263
ApeKI	GCWGC	1 cut(s)	307
AspS9I	GGNCC	3 cut(s)	187, 263, 325
AsuHPI	GGTGA	6 cut(s)	11, 30, 46, 58, 223, 334
AvaII	GGWCC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	319
BceAI	ACGGC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	289
BclI	TGATCA	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	218
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	3 cut(s)	187, 263, 325
BmrFI	CCNGG	1 cut(s)	289
BmsI	GCATC	3 cut(s)	17, 294, 319
BpuEI	CTTGAG	1 cut(s)	341
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	287, 348
BsaXI	ACNNNNNCTCC	3 cut(s)	122, 152, 344
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse118I	RCCGGY	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	287, 348
BseGI	GGATG	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	261
BseRI	GAGGAG	8 cut(s)	17, 33, 36, 67, 70, 73, 95, 130
BseXI	GCAGC	1 cut(s)	319
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	189, 265
BsiEI	CGRYCG	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	197, 323
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	266
BsnI	GGCC	2 cut(s)	189, 265
Bso31I	GGTCTC	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	3 cut(s)	117, 171, 339
BspACI	CCGC	3 cut(s)	234, 283, 345
BspANI	GGCC	2 cut(s)	189, 265
BspCNI	CTCAG	1 cut(s)	262
BspTNI	GGTCTC	1 cut(s)	266
BsrFI	RCCGGY	1 cut(s)	322
BssAI	RCCGGY	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	287, 348
BssMI	GATC	3 cut(s)	117, 171, 339
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	289
Bst6I	CTCTTC	2 cut(s)	65, 294
BstDEI	CTNAG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	8
BstKTI	GATC	3 cut(s)	120, 174, 342
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	3 cut(s)	117, 171, 339
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	3 cut(s)	262, 291, 328
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	319
BstXI	CCANNNNNNTGG	1 cut(s)	295
BsuRI	GGCC	2 cut(s)	189, 265
BtsCI	GGATG	1 cut(s)	8
Cfr10I	RCCGGY	1 cut(s)	322
Cfr13I	GGNCC	3 cut(s)	187, 263, 325
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	7 cut(s)	189, 221, 256, 265, 294, 331, 355
CviKI_1	RGCY	7 cut(s)	189, 221, 256, 265, 294, 331, 355
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	3 cut(s)	119, 173, 341
DpnII	GATC	3 cut(s)	117, 171, 339
Eam1104I	CTCTTC	2 cut(s)	65, 294
EarI	CTCTTC	2 cut(s)	65, 294
Ecl136II	GAGCTC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	325
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	1 cut(s)	245
FaiI	YATR	2 cut(s)	34, 243
FatI	CATG	1 cut(s)	241
FbaI	TGATCA	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	308
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	1 cut(s)	308
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	1 cut(s)	308
HaeIII	GGCC	2 cut(s)	189, 265
HapII	CCGG	2 cut(s)	197, 323
Hin1II	CATG	1 cut(s)	245
HpaII	CCGG	2 cut(s)	197, 323
HphI	GGTGA	6 cut(s)	11, 30, 46, 58, 223, 334
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	162, 271
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	322
HpyAV	CCTTC	2 cut(s)	157, 214
HpyCH4V	TGCA	1 cut(s)	307
HpyF10VI	GCNNNNNNNGC	3 cut(s)	262, 291, 328
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	3 cut(s)	117, 171, 339
LmnI	GCTCC	3 cut(s)	219, 291, 352
LpnPI	CCDG	6 cut(s)	210, 237, 274, 301, 336, 341
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	3 cut(s)	17, 294, 319
MaeI	CTAG	1 cut(s)	218
MalI	GATC	3 cut(s)	119, 173, 341
MboI	GATC	3 cut(s)	117, 171, 339
MboII	GAAGA	6 cut(s)	52, 55, 142, 199, 305, 311
MhlI	GDGCHC	1 cut(s)	357
MspI	CCGG	2 cut(s)	197, 323
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	3 cut(s)	262, 291, 328
NdeII	GATC	3 cut(s)	117, 171, 339
NlaIII	CATG	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	309
Ple19I	CGATCG	1 cut(s)	174
Psp124BI	GAGCTC	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspPI	GGNCC	3 cut(s)	187, 263, 325
PvuI	CGATCG	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	357
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	3 cut(s)	117, 171, 339
Sau96I	GGNCC	3 cut(s)	187, 263, 325
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	9 cut(s)	17, 27, 43, 77, 206, 223, 296, 333, 357
SfaNI	GCATC	3 cut(s)	17, 294, 319
SinI	GGWCC	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SsiI	CCGC	3 cut(s)	234, 283, 345
SspMI	CTAG	1 cut(s)	218
SstI	GAGCTC	1 cut(s)	357
StyD4I	CCNGG	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	348
TseI	GCWGC	1 cut(s)	307
TspGWI	ACGGA	1 cut(s)	306
VpaK11BI	GGWCC	1 cut(s)	325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.