Rmu_sc0000324.1_g000027

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000324.1
N/A
Physical Location & Seq
Reverse (-)
181809 .. 182733
925 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 354 bp
atgattcaaaaggtgatccgtgaggatccgaccattgaatcgtcatataattttgtgaggatgattcttagggcgatcagggacgatccaaccgttggatcttcgtttaattttgagaggatgaacctaagggcgatccgtgaggatctgaccattggatcattgtatacatcgcattcggagtcgggtgcaatcaaggtagagcaagtgcacgaccctgaagatgacctagcaaagctcgaatcagagtttggaaaggttggtcaagactactcaacaaaggaggtgggtgagtgggaatttgacgagcttgagagggaactaagatctggtgattcatcaactaccaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.41

Weight (kDa)

4.63

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 95
AccI GTMKAC 1 cut(s) 167
AclWI GGATC 8 cut(s) 10, 20, 33, 80, 106, 130, 153, 166
AcsI RAATTY 1 cut(s) 299
AcuI CTGAAG 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 2 cut(s) 8, 38
AjuI GAANNNNNNNTTGG 2 cut(s) 234, 266
AluBI AGCT 2 cut(s) 238, 310
AluI AGCT 2 cut(s) 238, 310
Alw21I GWGCWC 1 cut(s) 213
Alw44I GTGCAC 1 cut(s) 209
AlwI GGATC 8 cut(s) 10, 20, 33, 80, 106, 130, 153, 166
ApaLI GTGCAC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 299
AsuHPI GGTGA 3 cut(s) 25, 302, 344
AxyI CCTNAGG 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 213
BamHI GGATCC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 213
BfaI CTAG 1 cut(s) 230
BglII AGATCT 1 cut(s) 326
BmiI GGNNCC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 332
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse21I CCTNAGG 1 cut(s) 128
BseGI GGATG 2 cut(s) 66, 126
BseLI CCNNNNNNNGG 1 cut(s) 95
BseSI GKGCMC 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 213
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 95
BsmI GAATGC 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 9 cut(s) 15, 25, 75, 85, 98, 135, 145, 158, 326
BspLI GGNNCC 1 cut(s) 27
BspPI GGATC 8 cut(s) 10, 20, 33, 80, 106, 130, 153, 166
BssMI GATC 9 cut(s) 15, 25, 75, 85, 98, 135, 145, 158, 326
BssNAI GTATAC 1 cut(s) 168
Bst1107I GTATAC 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 94
BstDEI CTNAG 3 cut(s) 68, 128, 323
BstF5I GGATG 2 cut(s) 66, 126
BstKTI GATC 9 cut(s) 18, 28, 78, 88, 101, 138, 148, 161, 329
BstMBI GATC 9 cut(s) 15, 25, 75, 85, 98, 135, 145, 158, 326
BstSLI GKGCMC 1 cut(s) 213
BstX2I RGATCY 4 cut(s) 25, 98, 145, 326
BstYI RGATCY 4 cut(s) 25, 98, 145, 326
BstZ17I GTATAC 1 cut(s) 168
Bsu36I CCTNAGG 1 cut(s) 128
BtgZI GCGATG 1 cut(s) 156
BtsCI GGATG 2 cut(s) 66, 126
CspCI CAANNNNNGTGG 2 cut(s) 267, 302
CviJI RGCY 2 cut(s) 238, 310
CviKI_1 RGCY 2 cut(s) 238, 310
DdeI CTNAG 3 cut(s) 68, 128, 323
DpnI GATC 9 cut(s) 17, 27, 77, 87, 100, 137, 147, 160, 328
DpnII GATC 9 cut(s) 15, 25, 75, 85, 98, 135, 145, 158, 326
Eco57I CTGAAG 1 cut(s) 240
Eco81I CCTNAGG 1 cut(s) 128
FaiI YATR 3 cut(s) 46, 48, 168
FaqI GGGAC 1 cut(s) 95
FblI GTMKAC 1 cut(s) 167
FokI GGATG 2 cut(s) 73, 133
FspBI CTAG 1 cut(s) 230
HinfI GANTC 6 cut(s) 4, 38, 64, 182, 242, 335
HphI GGTGA 3 cut(s) 25, 302, 344
Hpy166II GTNNAC 2 cut(s) 168, 211
Hpy188I TCNGA 4 cut(s) 30, 150, 181, 247
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 2 cut(s) 168, 211
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 2 cut(s) 191, 211
HpyF3I CTNAG 3 cut(s) 68, 128, 323
Kzo9I GATC 9 cut(s) 15, 25, 75, 85, 98, 135, 145, 158, 326
LpnPI CCDG 3 cut(s) 64, 231, 315
MaeI CTAG 1 cut(s) 230
MalI GATC 9 cut(s) 17, 27, 77, 87, 100, 137, 147, 160, 328
MboI GATC 9 cut(s) 15, 25, 75, 85, 98, 135, 145, 158, 326
MboII GAAGA 2 cut(s) 93, 233
MflI RGATCY 4 cut(s) 25, 98, 145, 326
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 3 cut(s) 49, 109, 299
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 3 cut(s) 53, 76, 113
MnlI CCTC 6 cut(s) 16, 51, 111, 136, 277, 309
MseI TTAA 1 cut(s) 108
Mva1269I GAATGC 1 cut(s) 175
NdeII GATC 9 cut(s) 15, 25, 75, 85, 98, 135, 145, 158, 326
NlaIV GGNNCC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PctI GAATGC 1 cut(s) 175
PfeI GAWTC 5 cut(s) 4, 38, 64, 242, 335
PflMI CCANNNNNTGG 1 cut(s) 95
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 27
PsuI RGATCY 4 cut(s) 25, 98, 145, 326
SaqAI TTAA 1 cut(s) 108
Sau3AI GATC 9 cut(s) 15, 25, 75, 85, 98, 135, 145, 158, 326
SchI GAGTC 1 cut(s) 191
SduI GDGCHC 1 cut(s) 213
SetI ASST 8 cut(s) 15, 129, 201, 231, 240, 261, 288, 312
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 3 cut(s) 49, 109, 299
SspMI CTAG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 1 cut(s) 240
TasI AATT 3 cut(s) 49, 109, 299
TfiI GAWTC 5 cut(s) 4, 38, 64, 242, 335
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TspDTI ATGAA 2 cut(s) 137, 327
TspGWI ACGGA 2 cut(s) 8, 128
Van91I CCANNNNNTGG 1 cut(s) 95
VneI GTGCAC 1 cut(s) 209
XapI RAATTY 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 167
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.