Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000329.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19299 .. 20049

Gene Structure 751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgtgctataaagacttcaggagcagttatctagatgctgtctgcaaacaatctggtcgctccaactttatgtgctcaacacggtcaaggttgttacccaatgagacattatcaaaatgtgaacaggctgcgaaattctcacagaagaatgactttttgtgccgtgcattgaaaattgaaaattcatcttccttttcgacagggaagaagtttcaacttgatgatgtgattgaagctcaacaatttgatagagatattctcagtgccatttttgaagttgcacgtggtatggagaagattgagaagaattctctgggaagccaaattcttaagggttatcttatggctactctcttttatgaaccttccactagaactagactttcattcgagtctgccatgaaacggttgggcggggaagttttgactactgaaaatgcaagggagttttcttcagcagctaaaggagaaactcttgaagattctataagaactgttgaaggttactcagatataattgtaatgcgtcactttgagagtggcgcagcaaaaagagctgcagcaactgctgccattcctataattaatgcaggagatggtcctggacaacatccaacgcaggtatgctggaagttatccctattgccattgattgagagaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004070 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016740 GO:0016741 GO:0016743 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0034654 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046390 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

OTCace OTCace_N

Protein Analysis

221

Amino Acids

24.63

Weight (kDa)

8.7

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTCace_N	PF02729	75 - 208	7.2e-40	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	610
AciI	CCGC	1 cut(s)	414
AcsI	RAATTY	4 cut(s)	134, 181, 307, 324
AcuI	CTGAAG	1 cut(s)	438
AcvI	CACGTG	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	405
AflII	CTTAAG	1 cut(s)	329
AgsI	TTSAA	7 cut(s)	172, 179, 215, 233, 275, 479, 500
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	3 cut(s)	236, 461, 557
AluI	AGCT	3 cut(s)	236, 461, 557
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	566
ApeKI	GCWGC	6 cut(s)	128, 458, 545, 557, 560, 569
ApoI	RAATTY	4 cut(s)	134, 181, 307, 324
AseI	ATTAAT	1 cut(s)	585
AspLEI	GCGC	1 cut(s)	545
AspS9I	GGNCC	1 cut(s)	599
AvaII	GGWCC	1 cut(s)	599
BbrPI	CACGTG	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	6 cut(s)	115, 470, 544, 556, 557, 572
BccI	CCATC	1 cut(s)	590
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	603
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	3 cut(s)	32, 372, 378
BfmI	CTRYAG	1 cut(s)	558
BfrI	CTTAAG	1 cut(s)	329
BfuAI	ACCTGC	1 cut(s)	610
BisI	GCNGC	6 cut(s)	129, 459, 546, 558, 561, 570
BlsI	GCNGC	6 cut(s)	130, 460, 547, 559, 562, 571
Bme1390I	CCNGG	1 cut(s)	603
Bme18I	GGWCC	1 cut(s)	599
BmgT120I	GGNCC	1 cut(s)	599
BmrFI	CCNGG	1 cut(s)	603
BmsI	GCATC	1 cut(s)	25
BplI	GAGNNNNNCTC	2 cut(s)	243, 275
BsaAI	YACGTR	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	603
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	274, 522
BseXI	GCAGC	6 cut(s)	115, 470, 544, 556, 557, 572
BsiHKAI	GWGCWC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	405
BsmAI	GTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	77
BspACI	CCGC	1 cut(s)	414
BspCNI	CTCAG	2 cut(s)	273, 521
BspMAI	CTGCAG	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	610
BspTI	CTTAAG	1 cut(s)	329
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	3 cut(s)	84, 408, 496
BstAFI	CTTAAG	1 cut(s)	329
BstAPI	GCANNNNNTGC	2 cut(s)	566, 569
BstBAI	YACGTR	1 cut(s)	284
BstDEI	CTNAG	2 cut(s)	260, 508
BstF5I	GGATG	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	545
BstMAI	GTCTC	1 cut(s)	98
BstMWI	GCNNNNNNNGC	3 cut(s)	554, 566, 569
BstNI	CCWGG	1 cut(s)	603
BstSCI	CCNGG	1 cut(s)	601
BstSFI	CTRYAG	1 cut(s)	558
BstV1I	GCAGC	6 cut(s)	115, 470, 544, 556, 557, 572
BtsCI	GGATG	1 cut(s)	610
BtsIMutI	CAGTG	1 cut(s)	268
BveI	ACCTGC	1 cut(s)	610
CaiI	CAGNNNCTG	1 cut(s)	566
CfoI	GCGC	1 cut(s)	545
Cfr13I	GGNCC	1 cut(s)	599
CseI	GACGC	1 cut(s)	515
CviAII	CATG	1 cut(s)	400
CviJI	RGCY	6 cut(s)	128, 236, 321, 347, 461, 557
CviKI_1	RGCY	6 cut(s)	128, 236, 321, 347, 461, 557
DdeI	CTNAG	2 cut(s)	260, 508
Eco47I	GGWCC	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	438
Eco72I	CACGTG	1 cut(s)	284
EcoRI	GAATTC	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	601
FaeI	CATG	1 cut(s)	403
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FatI	CATG	1 cut(s)	399
FauI	CCCGC	1 cut(s)	407
Fnu4HI	GCNGC	6 cut(s)	129, 459, 546, 558, 561, 570
FokI	GGATG	1 cut(s)	597
Fsp4HI	GCNGC	6 cut(s)	129, 459, 546, 558, 561, 570
FspBI	CTAG	3 cut(s)	32, 372, 378
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	6 cut(s)	129, 459, 546, 558, 561, 570
HgaI	GACGC	1 cut(s)	515
HhaI	GCGC	1 cut(s)	545
Hin1II	CATG	1 cut(s)	403
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HinfI	GANTC	2 cut(s)	392, 482
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	1 cut(s)	511
Hpy188III	TCNNGA	3 cut(s)	19, 32, 476
Hpy8I	GTNNAC	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	375, 494
HpyCH4III	ACNGT	3 cut(s)	84, 408, 496
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	6 cut(s)	45, 167, 281, 440, 560, 590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	554, 566, 569
HpyF3I	CTNAG	2 cut(s)	260, 508
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	1 cut(s)	403
HspAI	GCGC	1 cut(s)	543
LmnI	GCTCC	2 cut(s)	21, 65
Lsp1109I	GCAGC	6 cut(s)	115, 470, 544, 556, 557, 572
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	3 cut(s)	32, 372, 378
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	3 cut(s)	93, 503, 527
MboII	GAAGA	7 cut(s)	157, 180, 217, 307, 316, 444, 491
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	8 cut(s)	134, 174, 181, 242, 307, 324, 516, 582
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	2 cut(s)	87, 638
MseI	TTAA	2 cut(s)	330, 585
MspCI	CTTAAG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	603
MvaI	CCWGG	1 cut(s)	603
MwoI	GCNNNNNNNGC	3 cut(s)	554, 566, 569
NlaIII	CATG	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	527
PfeI	GAWTC	1 cut(s)	482
PfoI	TCCNGGA	1 cut(s)	601
PkrI	GCNGC	6 cut(s)	130, 460, 547, 559, 562, 571
PleI	GAGTC	1 cut(s)	400
PmaCI	CACGTG	1 cut(s)	284
PmlI	CACGTG	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	400
Ppu21I	YACGTR	1 cut(s)	284
PshBI	ATTAAT	1 cut(s)	585
Psp6I	CCWGG	1 cut(s)	601
PspCI	CACGTG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	601
PspPI	GGNCC	1 cut(s)	599
PstI	CTGCAG	1 cut(s)	562
PstNI	CAGNNNCTG	1 cut(s)	566
SaqAI	TTAA	2 cut(s)	330, 585
SatI	GCNGC	6 cut(s)	129, 459, 546, 558, 561, 570
Sau96I	GGNCC	1 cut(s)	599
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	603
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	8 cut(s)	92, 238, 286, 367, 463, 505, 559, 624
SfaNI	GCATC	1 cut(s)	25
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	1 cut(s)	599
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	8 cut(s)	134, 174, 181, 242, 307, 324, 516, 582
SsiI	CCGC	1 cut(s)	414
SspMI	CTAG	3 cut(s)	32, 372, 378
StyD4I	CCNGG	1 cut(s)	601
TaaI	ACNGT	3 cut(s)	84, 408, 496
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	2 cut(s)	197, 390
TasI	AATT	8 cut(s)	134, 174, 181, 242, 307, 324, 516, 582
TfiI	GAWTC	1 cut(s)	482
Tru1I	TTAA	2 cut(s)	330, 585
Tru9I	TTAA	2 cut(s)	330, 585
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	527
TseI	GCWGC	6 cut(s)	128, 458, 545, 557, 560, 569
Tsp45I	GTSAC	1 cut(s)	527
TspDTI	ATGAA	4 cut(s)	174, 375, 375, 416
TspRI	CASTG	1 cut(s)	268
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	599
VspI	ATTAAT	1 cut(s)	585
XapI	RAATTY	4 cut(s)	134, 181, 307, 324
XbaI	TCTAGA	1 cut(s)	31
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XspI	CTAG	3 cut(s)	32, 372, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.