Rmu_sc0000332.1_g000055

Plant transposon protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000332.1
N/A
Physical Location & Seq
Forward (+)
251430 .. 252684
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 762 bp
atggccaccaacgccattgtgatcatagcagttgcagaagaatctgcaaaccaaactcgaaggcacagttctcatctgagtcatgcaccaaacgaggagagacttagagaagaaaggggcaaaaatttgatggtcgactactttgtcgaacgtccagtgttaaaagattgggaattccgaacatgttacaagatgagcctcaatgtcttcaaacgtatatctactgacctttgccatgctagagcagatcaatgtgttgagtattgttggatgaagaaatccacctccatcgcagcccttcagcaatttacaagaggaattgttaatctgtacacagcagaatacctccgcgctcctaatgaggtcgacctcagaccacttattgtcaaagctgagaggagaggttttccaggaatgattgagaacattgactgtttacgctatgatattgttagaggagctgctcgtgggtgggataaagaggacattcgatacattatgttgacttgtattatattacacaacataattgtcgaggatgaacgacctgaacacaacgatgatgagttggagtccgataatgaagaggataacaatataagccccaggattgctgaggtatgggaaggacccaccggtagagactttgatcatgttggtagatatggtcataatatgaacggattcatgaatcgataccaacaaattagatatgagtacactcactcgaaccttcaacaagatctcattcagcacttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

253

Amino Acids

29.78

Weight (kDa)

5.61

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 147 - 182 1.1e-09 Plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 143
AccI GTMKAC 2 cut(s) 135, 366
AccII CGCG 1 cut(s) 351
AciI CCGC 1 cut(s) 349
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 124, 173
AcuI CTGAAG 1 cut(s) 284
AfaI GTAC 2 cut(s) 332, 719
AflIII ACRYGT 1 cut(s) 182
AgeI ACCGGT 1 cut(s) 635
AgsI TTSAA 2 cut(s) 211, 737
AjnI CCWGG 2 cut(s) 409, 605
AluBI AGCT 2 cut(s) 392, 461
AluI AGCT 2 cut(s) 392, 461
Alw26I GTCTC 2 cut(s) 94, 636
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 293, 461
ApoI RAATTY 2 cut(s) 124, 173
AsiGI ACCGGT 1 cut(s) 635
Asp700I GAANNNNTTC 1 cut(s) 683
AspLEI GCGC 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 629
AvaII GGWCC 1 cut(s) 629
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 465
BbsI GAAGAC 1 cut(s) 199
BbvCI CCTCAGC 1 cut(s) 615
BbvI GCAGC 2 cut(s) 305, 448
BccI CCATC 2 cut(s) 124, 296
BciT130I CCWGG 2 cut(s) 411, 607
BclI TGATCA 2 cut(s) 21, 649
BcoDI GTCTC 2 cut(s) 94, 636
BfaI CTAG 1 cut(s) 240
BglII AGATCT 1 cut(s) 742
BisI GCNGC 2 cut(s) 294, 462
BlsI GCNGC 2 cut(s) 295, 463
Bme1390I CCNGG 2 cut(s) 411, 607
Bme18I GGWCC 1 cut(s) 629
BmgT120I GGNCC 1 cut(s) 629
BmiI GGNNCC 1 cut(s) 631
BmrFI CCNGG 2 cut(s) 411, 607
BpiI GAAGAC 1 cut(s) 199
Bpu10I CCTNAGC 1 cut(s) 615
Bsa29I ATCGAT 1 cut(s) 694
BsaJI CCNNGG 1 cut(s) 605
BsaWI WCCGGW 1 cut(s) 635
Bse118I RCCGGY 1 cut(s) 635
Bse1I ACTGG 1 cut(s) 155
BseBI CCWGG 2 cut(s) 411, 607
BseCI ATCGAT 1 cut(s) 694
BseDI CCNNGG 1 cut(s) 605
BseGI GGATG 2 cut(s) 276, 544
BseMII CTCAG 4 cut(s) 68, 384, 385, 606
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 3 cut(s) 110, 412, 471
BseXI GCAGC 2 cut(s) 305, 448
Bsh1236I CGCG 1 cut(s) 351
BshFI GGCC 1 cut(s) 5
BshTI ACCGGT 1 cut(s) 635
BshVI ATCGAT 1 cut(s) 694
BsiSI CCGG 1 cut(s) 636
BsmAI GTCTC 2 cut(s) 94, 636
BsnI GGCC 1 cut(s) 5
Bsp1407I TGTACA 1 cut(s) 330
Bsp143I GATC 4 cut(s) 21, 247, 649, 742
BspACI CCGC 1 cut(s) 349
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 4 cut(s) 69, 384, 385, 607
BspDI ATCGAT 1 cut(s) 694
BspFNI CGCG 1 cut(s) 351
BspHI TCATGA 1 cut(s) 687
BspLI GGNNCC 1 cut(s) 631
BsrFI RCCGGY 1 cut(s) 635
BsrGI TGTACA 1 cut(s) 330
BsrI ACTGG 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 635
BssECI CCNNGG 1 cut(s) 605
BssMI GATC 4 cut(s) 21, 247, 649, 742
BssSI CACGAG 1 cut(s) 465
Bst2BI CACGAG 1 cut(s) 465
Bst2UI CCWGG 2 cut(s) 411, 607
Bst4CI ACNGT 2 cut(s) 68, 434
Bst6I CTCTTC 1 cut(s) 579
BstAUI TGTACA 1 cut(s) 330
BstDEI CTNAG 5 cut(s) 77, 104, 371, 393, 615
BstF5I GGATG 2 cut(s) 276, 544
BstFNI CGCG 1 cut(s) 351
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 4 cut(s) 24, 250, 652, 745
BstMAI GTCTC 2 cut(s) 94, 636
BstMBI GATC 4 cut(s) 21, 247, 649, 742
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 411, 607
BstNSI RCATGY 1 cut(s) 186
BstSCI CCNGG 2 cut(s) 409, 605
BstUI CGCG 1 cut(s) 351
BstV1I GCAGC 2 cut(s) 305, 448
BstV2I GAAGAC 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 742
BstYI RGATCY 1 cut(s) 742
Bsu15I ATCGAT 1 cut(s) 694
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 694
BtgZI GCGATG 1 cut(s) 274
BtsCI GGATG 2 cut(s) 276, 544
BtsIMutI CAGTG 1 cut(s) 162
CciI TCATGA 1 cut(s) 687
CfoI GCGC 1 cut(s) 353
Cfr10I RCCGGY 1 cut(s) 635
Cfr13I GGNCC 1 cut(s) 629
ClaI ATCGAT 1 cut(s) 694
Csp6I GTAC 2 cut(s) 331, 718
CspAI ACCGGT 1 cut(s) 635
CviAII CATG 5 cut(s) 83, 183, 236, 653, 688
CviJI RGCY 6 cut(s) 5, 198, 296, 392, 461, 603
CviKI_1 RGCY 6 cut(s) 5, 198, 296, 392, 461, 603
CviQI GTAC 2 cut(s) 331, 718
DdeI CTNAG 5 cut(s) 77, 104, 371, 393, 615
DpnI GATC 4 cut(s) 23, 249, 651, 744
DpnII GATC 4 cut(s) 21, 247, 649, 742
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 579
EarI CTCTTC 1 cut(s) 579
Eco47I GGWCC 1 cut(s) 629
Eco57I CTGAAG 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 629
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 409, 605
FaeI CATG 5 cut(s) 86, 186, 239, 656, 691
FatI CATG 5 cut(s) 82, 182, 235, 652, 687
FbaI TGATCA 2 cut(s) 21, 649
FblI GTMKAC 2 cut(s) 135, 366
Fnu4HI GCNGC 2 cut(s) 294, 462
FokI GGATG 2 cut(s) 283, 551
Fsp4HI GCNGC 2 cut(s) 294, 462
FspBI CTAG 1 cut(s) 240
GlaI GCGC 1 cut(s) 352
GluI GCNGC 2 cut(s) 294, 462
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 636
HhaI GCGC 1 cut(s) 353
Hin1II CATG 5 cut(s) 86, 186, 239, 656, 691
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HincII GTYRAC 3 cut(s) 136, 367, 504
HindII GTYRAC 3 cut(s) 136, 367, 504
HinfI GANTC 5 cut(s) 41, 79, 572, 684, 691
HpaII CCGG 1 cut(s) 636
Hpy166II GTNNAC 6 cut(s) 136, 333, 367, 437, 504, 720
Hpy188I TCNGA 4 cut(s) 78, 179, 374, 577
Hpy188III TCNNGA 1 cut(s) 688
Hpy8I GTNNAC 6 cut(s) 136, 333, 367, 437, 504, 720
HpyAV CCTTC 4 cut(s) 54, 308, 620, 743
HpyCH4III ACNGT 2 cut(s) 68, 434
HpyCH4IV ACGT 2 cut(s) 151, 214
HpyCH4V TGCA 3 cut(s) 35, 47, 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 5 cut(s) 77, 104, 371, 393, 615
HpySE526I ACGT 2 cut(s) 151, 214
Hsp92II CATG 5 cut(s) 86, 186, 239, 656, 691
HspAI GCGC 1 cut(s) 351
Ksp22I TGATCA 2 cut(s) 21, 649
Kzo9I GATC 4 cut(s) 21, 247, 649, 742
LmnI GCTCC 2 cut(s) 358, 458
LpnPI CCDG 7 cut(s) 168, 396, 423, 561, 592, 619, 649
Lsp1109I GCAGC 2 cut(s) 305, 448
MaeI CTAG 1 cut(s) 240
MaeII ACGT 2 cut(s) 151, 214
MaeIII GTNAC 1 cut(s) 185
MalI GATC 4 cut(s) 23, 249, 651, 744
MboI GATC 4 cut(s) 21, 247, 649, 742
MboII GAAGA 5 cut(s) 50, 122, 199, 286, 596
MflI RGATCY 1 cut(s) 742
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 124, 173, 305, 318, 528, 705
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 88, 581
MmeI TCCRAC 2 cut(s) 248, 549
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 683
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 161, 324
MslI CAYNNNNRTG 1 cut(s) 558
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 636
MspR9I CCNGG 2 cut(s) 411, 607
MvaI CCWGG 2 cut(s) 411, 607
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 4 cut(s) 21, 247, 649, 742
NlaIII CATG 5 cut(s) 86, 186, 239, 656, 691
NlaIV GGNNCC 1 cut(s) 631
NspI RCATGY 1 cut(s) 186
PagI TCATGA 1 cut(s) 687
PciI ACATGT 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 683
PfeI GAWTC 3 cut(s) 41, 684, 691
PfoI TCCNGGA 1 cut(s) 409
PinAI ACCGGT 1 cut(s) 635
PkrI GCNGC 2 cut(s) 295, 463
PleI GAGTC 2 cut(s) 87, 580
PpsI GAGTC 2 cut(s) 87, 580
PpuMI RGGWCCY 1 cut(s) 629
PscI ACATGT 1 cut(s) 182
Psp5II RGGWCCY 1 cut(s) 629
Psp6I CCWGG 2 cut(s) 409, 605
PspGI CCWGG 2 cut(s) 409, 605
PspN4I GGNNCC 1 cut(s) 631
PspPI GGNCC 1 cut(s) 629
PspPPI RGGWCCY 1 cut(s) 629
PsuI RGATCY 1 cut(s) 742
RsaI GTAC 2 cut(s) 332, 719
RsaNI GTAC 2 cut(s) 331, 718
RseI CAYNNNNRTG 1 cut(s) 558
SalI GTCGAC 2 cut(s) 134, 365
SaqAI TTAA 2 cut(s) 161, 324
SatI GCNGC 2 cut(s) 294, 462
Sau3AI GATC 4 cut(s) 21, 247, 649, 742
Sau96I GGNCC 1 cut(s) 629
SchI GAGTC 2 cut(s) 88, 581
ScrFI CCNGG 2 cut(s) 411, 607
SinI GGWCC 1 cut(s) 629
SmiMI CAYNNNNRTG 1 cut(s) 558
Sse9I AATT 6 cut(s) 124, 173, 305, 318, 528, 705
SsiI CCGC 1 cut(s) 349
SspMI CTAG 1 cut(s) 240
StyD4I CCNGG 2 cut(s) 409, 605
TaaI ACNGT 2 cut(s) 68, 434
TaiI ACGT 2 cut(s) 154, 217
TaqI TCGA 8 cut(s) 58, 135, 147, 366, 490, 534, 694, 728
TasI AATT 6 cut(s) 124, 173, 305, 318, 528, 705
TatI WGTACW 2 cut(s) 330, 717
TfiI GAWTC 3 cut(s) 41, 684, 691
Tru1I TTAA 2 cut(s) 161, 324
Tru9I TTAA 2 cut(s) 161, 324
TscAI CASTG 1 cut(s) 162
TseI GCWGC 2 cut(s) 293, 461
TspDTI ATGAA 6 cut(s) 287, 555, 597, 676, 692, 704
TspGWI ACGGA 1 cut(s) 696
TspRI CASTG 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 629
XapI RAATTY 2 cut(s) 124, 173
XceI RCATGY 1 cut(s) 186
XmiI GTMKAC 2 cut(s) 135, 366
XmnI GAANNNNTTC 1 cut(s) 683
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.