Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000335.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

165426 .. 168769

Gene Structure 3344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atggcggctgaggagctgtggggaattggagggaagatgacgtcagcatcaacattgtcgtcgtcggcgatgatgttcttcctacgacgtattgaagaacattggtgggctttcgatttggagttggccgaaatctttgacgagttgtttgggttgctggcactaggagaaggttggcacaataatcaccatgcttttgagtactcagctcgacaaggcttggaatggtggcaaattgatgtttcttggcggtgtctgttcgacggcaatcgaggtccgaaggtgacaattgtgagatgggattgggggtatgatagtggtggcggggctgcctgtgtagcattcattttggatgggttcaagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0019752 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 ko03320 ko04152 ko04212 map01040 map01212 map03320 map04152 map04212

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

122

Amino Acids

13.94

Weight (kDa)

4.79

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	44
AciI	CCGC	3 cut(s)	5, 250, 324
AcoI	YGGCCR	1 cut(s)	126
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	95, 361
AluBI	AGCT	2 cut(s)	16, 209
AluI	AGCT	2 cut(s)	16, 209
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	329
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	179, 295
AvaII	GGWCC	1 cut(s)	275
BbvCI	CCTCAGC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	2 cut(s)	291, 347
BceAI	ACGGC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	164
BisI	GCNGC	2 cut(s)	6, 330
BlsI	GCNGC	2 cut(s)	7, 331
BmcAI	AGTACT	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmsI	GCATC	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	9
BsaHI	GRCGYC	1 cut(s)	41
BseGI	GGATG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	219
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	316
BshFI	GGCC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	128
BspACI	CCGC	3 cut(s)	5, 250, 324
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	218
BssNI	GRCGYC	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	2 cut(s)	9, 205
BstF5I	GGATG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstV1I	GCAGC	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	128
BtgZI	GCGATG	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	7 cut(s)	8, 16, 110, 128, 209, 219, 329
CviKI_1	RGCY	7 cut(s)	8, 16, 110, 128, 209, 219, 329
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	2 cut(s)	9, 205
EaeI	YGGCCR	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	275
FaeI	CATG	1 cut(s)	194
FaiI	YATR	2 cut(s)	192, 312
FatI	CATG	1 cut(s)	190
FauI	CCCGC	1 cut(s)	317
Fnu4HI	GCNGC	2 cut(s)	6, 330
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	2 cut(s)	6, 330
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	2 cut(s)	6, 330
HaeIII	GGCC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	194
HphI	GGTGA	2 cut(s)	179, 295
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	1 cut(s)	361
Hpy99I	CGWCG	4 cut(s)	64, 67, 90, 266
HpyAV	CCTTC	2 cut(s)	164, 274
HpyCH4IV	ACGT	2 cut(s)	41, 88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	2 cut(s)	9, 205
HpySE526I	ACGT	2 cut(s)	41, 88
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	194
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	2 cut(s)	143, 346
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	1 cut(s)	56
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	2 cut(s)	41, 88
MaeIII	GTNAC	1 cut(s)	283
MboII	GAAGA	3 cut(s)	46, 70, 107
MfeI	CAATTG	1 cut(s)	288
MluCI	AATT	3 cut(s)	24, 234, 288
MnlI	CCTC	3 cut(s)	4, 23, 266
MunI	CAATTG	1 cut(s)	288
Mva1269I	GAATGC	1 cut(s)	341
MwoI	GCNNNNNNNGC	1 cut(s)	338
NlaIII	CATG	1 cut(s)	194
NmuCI	GTSAC	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PctI	GAATGC	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	7, 331
PspPI	GGNCC	1 cut(s)	275
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SatI	GCNGC	2 cut(s)	6, 330
Sau96I	GGNCC	1 cut(s)	275
ScaI	AGTACT	1 cut(s)	203
SetI	ASST	7 cut(s)	18, 44, 91, 175, 211, 277, 285
SfaNI	GCATC	1 cut(s)	56
SinI	GGWCC	1 cut(s)	275
Sse9I	AATT	3 cut(s)	24, 234, 288
SsiI	CCGC	3 cut(s)	5, 250, 324
SspMI	CTAG	1 cut(s)	164
TaiI	ACGT	2 cut(s)	44, 91
TaqI	TCGA	4 cut(s)	114, 211, 261, 271
TasI	AATT	3 cut(s)	24, 234, 288
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	1 cut(s)	8
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	275
XspI	CTAG	1 cut(s)	164
ZraI	GACGTC	1 cut(s)	42
ZrmI	AGTACT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.