Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000339.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10578 .. 13604

Gene Structure 3027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atggcgaaggacgttgaagttgccgagcggggttccttctcagccaaggactaccatgacccgcctccagctccgctcttcgactcggttgagctgaccaaatggtcgttctacagagctgttatagctgagttcatagcaacccttctgtttctgtacatcactgtgctgactgtgatcgggtacaagtcccaaagcgagactgacgactgcggcggagttgggattttgggtattgcctgggcctttggaggcatgatcttcatcctcgtttactgcactgctggaatctcagggggtcacattaacccggctgtgacttttgggctgttcttggcccggaaggtgtcgctggtccgagctgtgatgtacatagtggctcagagtttgggtgccatagccggagttgggctagtcaaggctttccagagttcttactataaaaagtttggcggtggagccaatacgcttgctgatgggtacagcactggagttggattgtctgctgagattattgggacctttgtgctggtttacaccgttttctctgccactgacccaaagaggagtgctagagattcccatgttccggttttggcaccacttccaattgggagtttggaggcttcacgatccgagctttactctggaatcgatgacggagttttcgcgcacgggaggttctgtattgccggagccgaacgagttggtgtcggaggaagggtttgctggagagagagatttgttttcgatcggagcttcggggccgccgctgaggagtttggaggcttgacgatcggagctttactccggaatcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005215 GO:0005372 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006855 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0015893 GO:0016020 GO:0016021 GO:0019899 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031625 GO:0033993 GO:0034220 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044389 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071944 GO:0080170 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

273

Amino Acids

29.05

Weight (kDa)

6.9

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	31 - 207	1.5e-56	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
AccB1I	GGYRCC	2 cut(s)	392, 598
AccBSI	CCGCTC	2 cut(s)	28, 76
AccII	CGCG	1 cut(s)	671
AccIII	TCCGGA	1 cut(s)	810
AciI	CCGC	8 cut(s)	28, 62, 74, 213, 216, 453, 768, 771
AclWI	GGATC	1 cut(s)	627
AfaI	GTAC	4 cut(s)	158, 185, 371, 482
AfiI	CCNNNNNNNGG	2 cut(s)	408, 589
AgsI	TTSAA	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	239
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	8 cut(s)	71, 94, 119, 128, 362, 640, 759, 803
AluI	AGCT	8 cut(s)	71, 94, 119, 128, 362, 640, 759, 803
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	627
Aor13HI	TCCGGA	1 cut(s)	810
AoxI	GGCC	3 cut(s)	243, 336, 765
ArsI	GACNNNNNNTTYG	2 cut(s)	650, 682
AspLEI	GCGC	1 cut(s)	673
AspS9I	GGNCC	5 cut(s)	243, 337, 355, 519, 765
AsuC2I	CCSGG	2 cut(s)	311, 340
AvaII	GGWCC	2 cut(s)	355, 519
BanI	GGYRCC	2 cut(s)	392, 598
BbvCI	CCTCAGC	1 cut(s)	774
BccI	CCATC	1 cut(s)	470
BciT130I	CCWGG	1 cut(s)	241
BcnI	CCSGG	2 cut(s)	311, 340
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	2 cut(s)	413, 573
BfmI	CTRYAG	1 cut(s)	112
BisI	GCNGC	3 cut(s)	214, 768, 771
BlsI	GCNGC	3 cut(s)	215, 769, 772
Bme1390I	CCNGG	3 cut(s)	241, 311, 340
Bme18I	GGWCC	2 cut(s)	355, 519
BmgT120I	GGNCC	5 cut(s)	243, 337, 355, 519, 765
BmiI	GGNNCC	7 cut(s)	34, 394, 460, 520, 600, 697, 766
BmrFI	CCNGG	3 cut(s)	241, 311, 340
BplI	GAGNNNNNCTC	3 cut(s)	629, 661, 792
BpmI	CTGGAG	3 cut(s)	51, 510, 751
Bpu10I	CCTNAGC	1 cut(s)	774
BpuMI	CCSGG	2 cut(s)	311, 340
Bsa29I	ATCGAT	2 cut(s)	654, 817
BsaBI	GATNNNNATC	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	45, 240
BsaWI	WCCGGW	2 cut(s)	589, 810
BsaXI	ACNNNNNCTCC	4 cut(s)	670, 700, 708, 738
Bsc4I	CCNNNNNNNGG	2 cut(s)	408, 589
Bse1I	ACTGG	1 cut(s)	493
Bse8I	GATNNNNATC	1 cut(s)	263
BseAI	TCCGGA	1 cut(s)	810
BseBI	CCWGG	1 cut(s)	241
BseCI	ATCGAT	2 cut(s)	654, 817
BseDI	CCNNGG	2 cut(s)	45, 240
BseGI	GGATG	1 cut(s)	264
BseJI	GATNNNNATC	1 cut(s)	263
BseLI	CCNNNNNNNGG	2 cut(s)	408, 589
BseMII	CTCAG	6 cut(s)	54, 120, 306, 395, 498, 765
BseNI	ACTGG	1 cut(s)	493
BseRI	GAGGAG	2 cut(s)	580, 791
BsgI	GTGCAG	1 cut(s)	262
Bsh1236I	CGCG	1 cut(s)	671
Bsh1285I	CGRYCG	2 cut(s)	754, 798
BshFI	GGCC	3 cut(s)	245, 338, 767
BshNI	GGYRCC	2 cut(s)	392, 598
BshVI	ATCGAT	2 cut(s)	654, 817
BsiEI	CGRYCG	2 cut(s)	754, 798
BsiSI	CCGG	6 cut(s)	311, 340, 402, 590, 693, 811
BslFI	GGGAC	2 cut(s)	175, 532
BslI	CCNNNNNNNGG	2 cut(s)	408, 589
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	2 cut(s)	175, 532
BsnI	GGCC	3 cut(s)	245, 338, 767
Bsp13I	TCCGGA	1 cut(s)	810
Bsp1407I	TGTACA	2 cut(s)	156, 369
Bsp143I	GATC	5 cut(s)	177, 258, 632, 751, 795
BspACI	CCGC	8 cut(s)	28, 62, 74, 213, 216, 453, 768, 771
BspANI	GGCC	3 cut(s)	245, 338, 767
BspCNI	CTCAG	6 cut(s)	53, 121, 305, 394, 499, 766
BspDI	ATCGAT	2 cut(s)	654, 817
BspEI	TCCGGA	1 cut(s)	810
BspFNI	CGCG	1 cut(s)	671
BspLI	GGNNCC	7 cut(s)	34, 394, 460, 520, 600, 697, 766
BspPI	GGATC	1 cut(s)	627
BspQI	GCTCTTC	1 cut(s)	83
BspT107I	GGYRCC	2 cut(s)	392, 598
BsrBI	CCGCTC	2 cut(s)	28, 76
BsrGI	TGTACA	2 cut(s)	156, 369
BsrI	ACTGG	1 cut(s)	493
BssECI	CCNNGG	2 cut(s)	45, 240
BssMI	GATC	5 cut(s)	177, 258, 632, 751, 795
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	241
Bst4CI	ACNGT	3 cut(s)	166, 175, 541
Bst6I	CTCTTC	1 cut(s)	83
BstAUI	TGTACA	2 cut(s)	156, 369
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	6 cut(s)	40, 129, 292, 381, 507, 774
BstF5I	GGATG	1 cut(s)	264
BstFNI	CGCG	1 cut(s)	671
BstHHI	GCGC	1 cut(s)	673
BstKTI	GATC	5 cut(s)	180, 261, 635, 754, 798
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	5 cut(s)	177, 258, 632, 751, 795
BstMCI	CGRYCG	2 cut(s)	754, 798
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	1 cut(s)	241
BstSCI	CCNGG	3 cut(s)	239, 309, 338
BstSFI	CTRYAG	1 cut(s)	112
BstUI	CGCG	1 cut(s)	671
Bsu15I	ATCGAT	2 cut(s)	654, 817
BsuRI	GGCC	3 cut(s)	245, 338, 767
BsuTUI	ATCGAT	2 cut(s)	654, 817
BtsCI	GGATG	1 cut(s)	264
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	4 cut(s)	162, 279, 486, 552
Cac8I	GCNNGC	1 cut(s)	471
CfoI	GCGC	1 cut(s)	673
Cfr13I	GGNCC	5 cut(s)	243, 337, 355, 519, 765
ClaI	ATCGAT	2 cut(s)	654, 817
Csp6I	GTAC	4 cut(s)	157, 184, 370, 481
CviAII	CATG	3 cut(s)	56, 256, 584
CviQI	GTAC	4 cut(s)	157, 184, 370, 481
DdeI	CTNAG	6 cut(s)	40, 129, 292, 381, 507, 774
DpnI	GATC	5 cut(s)	179, 260, 634, 753, 797
DpnII	GATC	5 cut(s)	177, 258, 632, 751, 795
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	2 cut(s)	355, 519
EcoO109I	RGGNCCY	1 cut(s)	519
EcoRII	CCWGG	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	3 cut(s)	59, 259, 587
FaiI	YATR	8 cut(s)	57, 125, 137, 257, 374, 398, 441, 585
FaqI	GGGAC	2 cut(s)	175, 532
FatI	CATG	3 cut(s)	55, 255, 583
FauI	CCCGC	2 cut(s)	21, 69
Fnu4HI	GCNGC	3 cut(s)	214, 768, 771
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	3 cut(s)	214, 768, 771
FspBI	CTAG	2 cut(s)	413, 573
GlaI	GCGC	1 cut(s)	672
GluI	GCNGC	3 cut(s)	214, 768, 771
GsuI	CTGGAG	3 cut(s)	51, 510, 751
HaeIII	GGCC	3 cut(s)	245, 338, 767
HapII	CCGG	6 cut(s)	311, 340, 402, 590, 693, 811
HhaI	GCGC	1 cut(s)	673
Hin1II	CATG	3 cut(s)	59, 259, 587
Hin6I	GCGC	1 cut(s)	671
HinP1I	GCGC	1 cut(s)	671
HinfI	GANTC	5 cut(s)	83, 288, 578, 651, 814
HpaII	CCGG	6 cut(s)	311, 340, 402, 590, 693, 811
Hpy166II	GTNNAC	2 cut(s)	274, 535
Hpy188I	TCNGA	6 cut(s)	359, 384, 637, 716, 756, 800
Hpy188III	TCNNGA	4 cut(s)	427, 630, 648, 811
Hpy8I	GTNNAC	2 cut(s)	274, 535
HpyAV	CCTTC	4 cut(s)	46, 155, 337, 714
HpyCH4III	ACNGT	3 cut(s)	166, 175, 541
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	6 cut(s)	40, 129, 292, 381, 507, 774
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	59, 259, 587
HspAI	GCGC	1 cut(s)	671
Kpn2I	TCCGGA	1 cut(s)	810
Kzo9I	GATC	5 cut(s)	177, 258, 632, 751, 795
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	5 cut(s)	76, 458, 695, 756, 800
MaeI	CTAG	2 cut(s)	413, 573
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	299, 316
MalI	GATC	5 cut(s)	179, 260, 634, 753, 797
MbiI	CCGCTC	2 cut(s)	28, 76
MboI	GATC	5 cut(s)	177, 258, 632, 751, 795
MboII	GAAGA	2 cut(s)	70, 253
MfeI	CAATTG	1 cut(s)	609
MluCI	AATT	1 cut(s)	609
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	475, 694
MnlI	CCTC	9 cut(s)	75, 245, 278, 558, 616, 672, 710, 769, 779
MroI	TCCGGA	1 cut(s)	810
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	773
MspI	CCGG	6 cut(s)	311, 340, 402, 590, 693, 811
MspR9I	CCNGG	3 cut(s)	241, 311, 340
MunI	CAATTG	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	241
MvnI	CGCG	1 cut(s)	671
MwoI	GCNNNNNNNGC	1 cut(s)	125
NciI	CCSGG	2 cut(s)	311, 340
NdeII	GATC	5 cut(s)	177, 258, 632, 751, 795
NlaIII	CATG	3 cut(s)	59, 259, 587
NlaIV	GGNNCC	7 cut(s)	34, 394, 460, 520, 600, 697, 766
NmeAIII	GCCGAG	1 cut(s)	49
NmuCI	GTSAC	2 cut(s)	299, 316
PciSI	GCTCTTC	1 cut(s)	83
PfeI	GAWTC	4 cut(s)	288, 578, 651, 814
PkrI	GCNGC	3 cut(s)	215, 769, 772
Ple19I	CGATCG	2 cut(s)	754, 798
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PpuMI	RGGWCCY	1 cut(s)	519
Psp5II	RGGWCCY	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	239
PspN4I	GGNNCC	7 cut(s)	34, 394, 460, 520, 600, 697, 766
PspPI	GGNCC	5 cut(s)	243, 337, 355, 519, 765
PspPPI	RGGWCCY	1 cut(s)	519
PvuI	CGATCG	2 cut(s)	754, 798
RsaI	GTAC	4 cut(s)	158, 185, 371, 482
RsaNI	GTAC	4 cut(s)	157, 184, 370, 481
RseI	CAYNNNNRTG	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	3 cut(s)	214, 768, 771
Sau3AI	GATC	5 cut(s)	177, 258, 632, 751, 795
Sau96I	GGNCC	5 cut(s)	243, 337, 355, 519, 765
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	3 cut(s)	241, 311, 340
SfcI	CTRYAG	1 cut(s)	112
SinI	GGWCC	2 cut(s)	355, 519
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	609
SsiI	CCGC	8 cut(s)	28, 62, 74, 213, 216, 453, 768, 771
SspMI	CTAG	2 cut(s)	413, 573
StyD4I	CCNGG	3 cut(s)	239, 309, 338
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	3 cut(s)	166, 175, 541
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	4 cut(s)	81, 654, 750, 817
TasI	AATT	1 cut(s)	609
TatI	WGTACW	2 cut(s)	156, 369
TauI	GCSGC	3 cut(s)	216, 770, 773
TfiI	GAWTC	4 cut(s)	288, 578, 651, 814
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	4 cut(s)	169, 286, 493, 559
TseFI	GTSAC	2 cut(s)	299, 316
Tsp45I	GTSAC	2 cut(s)	299, 316
TspDTI	ATGAA	2 cut(s)	124, 253
TspGWI	ACGGA	1 cut(s)	675
TspRI	CASTG	4 cut(s)	169, 286, 493, 559
VpaK11BI	GGWCC	2 cut(s)	355, 519
XspI	CTAG	2 cut(s)	413, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.