Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000363.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

239297 .. 239874

Gene Structure 578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atggagctcgacgacttcccacacgcctcccatggcacgtcgcccacgctgtcggagctcgtcggaagggagaccctcagtttcggcaagtcgtctctgatcgacaccttggccaatcgcatcgccaagggaagcctgaaaggaaaggtcagcctcaatgacgaggttctggagttgcggctagtcaaagtgatatcagcctatgtcatgcaagacgatctgctattcctgatgctaacggtggaggagacgctcatgttcgcagccgagttccgcctcccgcggagagcactgccgcgtcccgatcagaatcgacatagtccacgaccagatcatcctcttcctctaagagctaacctccggcctcgactacactcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009698 GO:0009699 GO:0009987 GO:0010208 GO:0010345 GO:0010927 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019438 GO:0019748 GO:0022607 GO:0022804 GO:0022857 GO:0030198 GO:0031224 GO:0032501 GO:0032502 GO:0032989 GO:0042623 GO:0042626 GO:0043062 GO:0043207 GO:0043492 GO:0044085 GO:0044237 GO:0044249 GO:0044425 GO:0044464 GO:0044550 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071704 GO:0071840 GO:0071944 GO:0085029 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko01523 ko02010 ko04976 map01523 map02010 map04976

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

126

Amino Acids

14.22

Weight (kDa)

8.19

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	283, 298
AciI	CCGC	5 cut(s)	178, 274, 281, 283, 296
AcoI	YGGCCR	1 cut(s)	111
AjiI	CACGTC	1 cut(s)	39
AluBI	AGCT	3 cut(s)	7, 58, 353
AluI	AGCT	3 cut(s)	7, 58, 353
Alw21I	GWGCWC	3 cut(s)	9, 60, 292
Alw26I	GTCTC	3 cut(s)	65, 99, 242
AoxI	GGCC	2 cut(s)	111, 362
ApeKI	GCWGC	1 cut(s)	263
BalI	TGGCCA	1 cut(s)	113
BanII	GRGCYC	2 cut(s)	9, 60
Bbv12I	GWGCWC	3 cut(s)	9, 60, 292
BbvI	GCAGC	1 cut(s)	275
BcoDI	GTCTC	3 cut(s)	65, 99, 242
BfaI	CTAG	1 cut(s)	182
BisI	GCNGC	3 cut(s)	179, 264, 296
BlsI	GCNGC	3 cut(s)	180, 265, 297
BmgBI	CACGTC	1 cut(s)	39
BmsI	GCATC	2 cut(s)	129, 222
BplI	GAGNNNNNCTC	2 cut(s)	342, 374
BpmI	CTGGAG	1 cut(s)	191
BsaBI	GATNNNNATC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	4 cut(s)	31, 108, 126, 281
Bse8I	GATNNNNATC	1 cut(s)	309
BseDI	CCNNGG	4 cut(s)	31, 108, 126, 281
BseGI	GGATG	1 cut(s)	334
BseJI	GATNNNNATC	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	91
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	275
Bsh1236I	CGCG	2 cut(s)	283, 298
BshFI	GGCC	2 cut(s)	113, 364
BsiHKAI	GWGCWC	3 cut(s)	9, 60, 292
BsiSI	CCGG	1 cut(s)	361
BslFI	GGGAC	1 cut(s)	285
BsmAI	GTCTC	3 cut(s)	65, 99, 242
BsmBI	CGTCTC	2 cut(s)	99, 242
BsmFI	GGGAC	1 cut(s)	285
BsnI	GGCC	2 cut(s)	113, 364
Bso31I	GGTCTC	1 cut(s)	65
Bsp1286I	GDGCHC	3 cut(s)	9, 60, 292
Bsp143I	GATC	4 cut(s)	99, 217, 304, 331
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	5 cut(s)	178, 274, 281, 283, 296
BspANI	GGCC	2 cut(s)	113, 364
BspCNI	CTCAG	1 cut(s)	90
BspFNI	CGCG	2 cut(s)	283, 298
BspHI	TCATGA	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	65
BssECI	CCNNGG	4 cut(s)	31, 108, 126, 281
BssMI	GATC	4 cut(s)	99, 217, 304, 331
BssT1I	CCWWGG	3 cut(s)	31, 108, 126
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	345
BstDEI	CTNAG	2 cut(s)	77, 347
BstDSI	CCRYGG	2 cut(s)	31, 281
BstF5I	GGATG	1 cut(s)	334
BstFNI	CGCG	2 cut(s)	283, 298
BstKTI	GATC	4 cut(s)	102, 220, 307, 334
BstMAI	GTCTC	3 cut(s)	65, 99, 242
BstMBI	GATC	4 cut(s)	99, 217, 304, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstUI	CGCG	2 cut(s)	283, 298
BstV1I	GCAGC	1 cut(s)	275
BsuRI	GGCC	2 cut(s)	113, 364
BtgI	CCRYGG	2 cut(s)	31, 281
BtgZI	GCGATG	1 cut(s)	106
BtrI	CACGTC	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	290
CciI	TCATGA	1 cut(s)	377
Cfr42I	CCGCGG	1 cut(s)	284
CseI	GACGC	2 cut(s)	259, 287
CviAII	CATG	4 cut(s)	32, 208, 256, 378
DdeI	CTNAG	2 cut(s)	77, 347
DpnI	GATC	4 cut(s)	101, 219, 306, 333
DpnII	GATC	4 cut(s)	99, 217, 304, 331
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
EciI	GGCGGA	1 cut(s)	263
Ecl136II	GAGCTC	2 cut(s)	7, 58
Eco130I	CCWWGG	3 cut(s)	31, 108, 126
Eco24I	GRGCYC	2 cut(s)	9, 60
Eco31I	GGTCTC	1 cut(s)	65
Eco32I	GATATC	1 cut(s)	195
Eco53kI	GAGCTC	2 cut(s)	7, 58
EcoICRI	GAGCTC	2 cut(s)	7, 58
EcoRV	GATATC	1 cut(s)	195
EcoT14I	CCWWGG	3 cut(s)	31, 108, 126
EcoT38I	GRGCYC	2 cut(s)	9, 60
ErhI	CCWWGG	3 cut(s)	31, 108, 126
Esp3I	CGTCTC	2 cut(s)	99, 242
FaeI	CATG	4 cut(s)	35, 211, 259, 381
FaiI	YATR	6 cut(s)	33, 204, 209, 257, 318, 379
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	4 cut(s)	31, 207, 255, 377
FauI	CCCGC	1 cut(s)	288
Fnu4HI	GCNGC	3 cut(s)	179, 264, 296
FokI	GGATG	1 cut(s)	321
FriOI	GRGCYC	2 cut(s)	9, 60
Fsp4HI	GCNGC	3 cut(s)	179, 264, 296
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	3 cut(s)	179, 264, 296
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	2 cut(s)	113, 364
HapII	CCGG	1 cut(s)	361
HgaI	GACGC	2 cut(s)	259, 287
Hin1II	CATG	4 cut(s)	35, 211, 259, 381
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	361
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	4 cut(s)	55, 65, 99, 309
Hpy188III	TCNNGA	4 cut(s)	170, 229, 302, 378
Hpy8I	GTNNAC	1 cut(s)	323
Hpy99I	CGWCG	3 cut(s)	14, 43, 65
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	1 cut(s)	211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	2 cut(s)	77, 347
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	4 cut(s)	35, 211, 259, 381
KspI	CCGCGG	1 cut(s)	284
Kzo9I	GATC	4 cut(s)	99, 217, 304, 331
LmnI	GCTCC	2 cut(s)	4, 55
LpnPI	CCDG	5 cut(s)	149, 155, 242, 342, 374
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	2 cut(s)	129, 222
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	1 cut(s)	38
MalI	GATC	4 cut(s)	101, 219, 306, 333
MboI	GATC	4 cut(s)	99, 217, 304, 331
MboII	GAAGA	1 cut(s)	332
MhlI	GDGCHC	3 cut(s)	9, 60, 292
MlsI	TGGCCA	1 cut(s)	113
MluNI	TGGCCA	1 cut(s)	113
MmeI	TCCRAC	2 cut(s)	33, 43
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	283
MspI	CCGG	1 cut(s)	361
MvnI	CGCG	2 cut(s)	283, 298
MwoI	GCNNNNNNNGC	1 cut(s)	55
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	4 cut(s)	99, 217, 304, 331
NlaIII	CATG	4 cut(s)	35, 211, 259, 381
NmeAIII	GCCGAG	1 cut(s)	292
PagI	TCATGA	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	310
PflFI	GACNNNGTC	1 cut(s)	318
PkrI	GCNGC	3 cut(s)	180, 265, 297
Psp124BI	GAGCTC	2 cut(s)	9, 60
PsyI	GACNNNGTC	1 cut(s)	318
SacI	GAGCTC	2 cut(s)	9, 60
SacII	CCGCGG	1 cut(s)	284
SatI	GCNGC	3 cut(s)	179, 264, 296
Sau3AI	GATC	4 cut(s)	99, 217, 304, 331
SduI	GDGCHC	3 cut(s)	9, 60, 292
SetI	ASST	8 cut(s)	9, 41, 60, 110, 150, 168, 355, 360
SfaNI	GCATC	2 cut(s)	129, 222
Sfr303I	CCGCGG	1 cut(s)	284
SgrBI	CCGCGG	1 cut(s)	284
SsiI	CCGC	5 cut(s)	178, 274, 281, 283, 296
SspMI	CTAG	1 cut(s)	182
SstI	GAGCTC	2 cut(s)	9, 60
StyI	CCWWGG	3 cut(s)	31, 108, 126
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	4 cut(s)	9, 102, 313, 367
TauI	GCSGC	2 cut(s)	181, 298
TfiI	GAWTC	1 cut(s)	310
TscAI	CASTG	1 cut(s)	297
TseI	GCWGC	1 cut(s)	263
TspRI	CASTG	1 cut(s)	297
Tth111I	GACNNNGTC	1 cut(s)	318
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.