Rmu_sc0000365.1_g000058

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000365.1
N/A
Physical Location & Seq
Reverse (-)
254390 .. 255341
952 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 696 bp
atgtttgcttacggtgctggggtagaccaatgcgctaagtattgtcggatggtgaaatctacctccatcgaggcttttcaacgatttacaaaaggaatcgttaatttgtactcggtagaatacctccgggctcctacttcggccgacatcagaagactgcttgccaaagttgagataagaggttttcctaggatgattggaagcatcgactgcatgcactggcaatggaaaaattgcctaacaagttgggctggagaatatagcggtcgaaaacgtatccccactatcatcctcgaagcagccgcacacatcttacaacacatagatatggcacgccttctttggaatgcctggtcgcgctttagtattgttagaggagtggctcgtgggtgggatagagaagactttcgatacattatgttgacttgtattatattacacaacataataatagaggatgaaagaccagaggatagtgatgaggaattggagtccgatgaagaagatgataacaatatgaggccgaggttggctacggtttgggaaggaccgaccgatgatgactttgatcatgttggtagagatggttattatttcaacggattcatggatcgatacagtgccattagatgtgcaagtagagtatttttggaacattcaaggcaacttggagatctagatttggtagatgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

231

Amino Acids

26.92

Weight (kDa)

5.31

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 40 - 108 2.4e-24 Plant transposon protein
Plant_tran PF04827 118 - 156 7.7e-10 Plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 358
AciI CCGC 2 cut(s) 264, 303
AclWI GGATC 1 cut(s) 618
AcoI YGGCCR 1 cut(s) 141
AfaI GTAC 1 cut(s) 110
AgsI TTSAA 3 cut(s) 80, 598, 660
AjnI CCWGG 1 cut(s) 350
AlwI GGATC 1 cut(s) 618
AoxI GGCC 2 cut(s) 141, 521
ApeKI GCWGC 1 cut(s) 299
Asp700I GAANNNNTTC 1 cut(s) 405
AspA2I CCTAGG 1 cut(s) 188
AspLEI GCGC 2 cut(s) 35, 360
AspS9I GGNCC 1 cut(s) 548
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 64
AvaII GGWCC 1 cut(s) 548
AvrII CCTAGG 1 cut(s) 188
BanII GRGCYC 1 cut(s) 133
BauI CACGAG 1 cut(s) 384
BbsI GAAGAC 2 cut(s) 160, 408
BbvI GCAGC 1 cut(s) 311
BccI CCATC 3 cut(s) 43, 74, 578
BciT130I CCWGG 1 cut(s) 352
BciVI GTATCC 1 cut(s) 287
BclI TGATCA 1 cut(s) 568
BcnI CCSGG 1 cut(s) 128
BfaI CTAG 2 cut(s) 189, 677
BfuI GTATCC 1 cut(s) 287
BglII AGATCT 1 cut(s) 673
BisI GCNGC 2 cut(s) 300, 303
BlnI CCTAGG 1 cut(s) 188
BlsI GCNGC 2 cut(s) 301, 304
Bme1390I CCNGG 2 cut(s) 128, 352
Bme18I GGWCC 1 cut(s) 548
BmgT120I GGNCC 1 cut(s) 548
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 2 cut(s) 128, 352
BmsI GCATC 1 cut(s) 213
BpiI GAAGAC 2 cut(s) 160, 408
BpmI CTGGAG 1 cut(s) 273
BpuMI CCSGG 1 cut(s) 128
Bsa29I ATCGAT 1 cut(s) 613
BsaJI CCNNGG 2 cut(s) 188, 524
Bse1I ACTGG 1 cut(s) 224
Bse3DI GCAATG 1 cut(s) 230
BseBI CCWGG 1 cut(s) 352
BseCI ATCGAT 1 cut(s) 613
BseDI CCNNGG 2 cut(s) 188, 524
BseGI GGATG 4 cut(s) 54, 198, 288, 463
BseMI GCAATG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 224
BseRI GAGGAG 1 cut(s) 390
BseX3I CGGCCG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 311
BseYI CCCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 358
Bsh1285I CGRYCG 3 cut(s) 144, 268, 555
BshFI GGCC 2 cut(s) 143, 523
BshVI ATCGAT 1 cut(s) 613
BsiEI CGRYCG 3 cut(s) 144, 268, 555
BsiSI CCGG 1 cut(s) 127
BsmI GAATGC 1 cut(s) 352
BsnI GGCC 2 cut(s) 143, 523
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 3 cut(s) 568, 610, 673
BspACI CCGC 2 cut(s) 264, 303
BspANI GGCC 2 cut(s) 143, 523
BspDI ATCGAT 1 cut(s) 613
BspFNI CGCG 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 132
BspPI GGATC 1 cut(s) 618
BsrDI GCAATG 1 cut(s) 230
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 188, 524
BssMI GATC 3 cut(s) 568, 610, 673
BssSI CACGAG 1 cut(s) 384
BssT1I CCWWGG 1 cut(s) 188
Bst2BI CACGAG 1 cut(s) 384
Bst2UI CCWGG 1 cut(s) 352
Bst4CI ACNGT 3 cut(s) 14, 538, 620
BstAPI GCANNNNNTGC 1 cut(s) 210
BstC8I GCNNGC 3 cut(s) 162, 215, 334
BstDEI CTNAG 1 cut(s) 36
BstF5I GGATG 4 cut(s) 54, 198, 288, 463
BstFNI CGCG 1 cut(s) 358
BstHHI GCGC 2 cut(s) 35, 360
BstKTI GATC 3 cut(s) 571, 613, 676
BstMBI GATC 3 cut(s) 568, 610, 673
BstMCI CGRYCG 3 cut(s) 144, 268, 555
BstMWI GCNNNNNNNGC 2 cut(s) 14, 210
BstNI CCWGG 1 cut(s) 352
BstNSI RCATGY 1 cut(s) 217
BstSCI CCNGG 2 cut(s) 126, 350
BstUI CGCG 1 cut(s) 358
BstV1I GCAGC 1 cut(s) 311
BstV2I GAAGAC 2 cut(s) 160, 408
BstX2I RGATCY 1 cut(s) 673
BstYI RGATCY 1 cut(s) 673
BstZI CGGCCG 1 cut(s) 141
Bsu15I ATCGAT 1 cut(s) 613
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 2 cut(s) 143, 523
BsuTUI ATCGAT 1 cut(s) 613
BtsCI GGATG 4 cut(s) 54, 198, 288, 463
BtsIMutI CAGTG 2 cut(s) 217, 625
Cac8I GCNNGC 3 cut(s) 162, 215, 334
CfoI GCGC 2 cut(s) 35, 360
Cfr13I GGNCC 1 cut(s) 548
ClaI ATCGAT 1 cut(s) 613
Csp6I GTAC 1 cut(s) 109
CviAII CATG 3 cut(s) 214, 572, 607
CviJI RGCY 8 cut(s) 74, 131, 143, 251, 302, 383, 523, 533
CviKI_1 RGCY 8 cut(s) 74, 131, 143, 251, 302, 383, 523, 533
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 1 cut(s) 36
DpnI GATC 3 cut(s) 570, 612, 675
DpnII GATC 3 cut(s) 568, 610, 673
EaeI YGGCCR 1 cut(s) 141
EagI CGGCCG 1 cut(s) 141
EclXI CGGCCG 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 548
Eco52I CGGCCG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 350
EcoT14I CCWWGG 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 3 cut(s) 217, 575, 610
FatI CATG 3 cut(s) 213, 571, 606
FbaI TGATCA 1 cut(s) 568
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 300, 303
FokI GGATG 4 cut(s) 61, 205, 275, 470
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 2 cut(s) 300, 303
FspBI CTAG 2 cut(s) 189, 677
GlaI GCGC 2 cut(s) 34, 359
GluI GCNGC 2 cut(s) 300, 303
GsaI CCCAGC 1 cut(s) 21
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 2 cut(s) 143, 523
HapII CCGG 1 cut(s) 127
HhaI GCGC 2 cut(s) 35, 360
Hin1II CATG 3 cut(s) 217, 575, 610
Hin6I GCGC 2 cut(s) 33, 358
HinP1I GCGC 2 cut(s) 33, 358
HincII GTYRAC 1 cut(s) 423
HindII GTYRAC 1 cut(s) 423
HinfI GANTC 3 cut(s) 96, 491, 603
HpaII CCGG 1 cut(s) 127
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 2 cut(s) 25, 423
Hpy188I TCNGA 3 cut(s) 48, 152, 496
Hpy188III TCNNGA 1 cut(s) 677
Hpy8I GTNNAC 2 cut(s) 25, 423
HpyAV CCTTC 2 cut(s) 347, 539
HpyCH4III ACNGT 3 cut(s) 14, 538, 620
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 3 cut(s) 213, 217, 635
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 210
HpyF3I CTNAG 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 3 cut(s) 217, 575, 610
HspAI GCGC 2 cut(s) 33, 358
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 3 cut(s) 568, 610, 673
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 7 cut(s) 3, 140, 205, 237, 337, 364, 480
Lsp1109I GCAGC 1 cut(s) 311
LweI GCATC 1 cut(s) 213
MaeI CTAG 2 cut(s) 189, 677
MaeII ACGT 1 cut(s) 274
MalI GATC 3 cut(s) 570, 612, 675
MboI GATC 3 cut(s) 568, 610, 673
MboII GAAGA 4 cut(s) 165, 413, 512, 515
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 3 cut(s) 103, 232, 485
MlyI GAGTC 1 cut(s) 500
MmeI TCCRAC 1 cut(s) 26
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 1 cut(s) 326
MspI CCGG 1 cut(s) 127
MspR9I CCNGG 2 cut(s) 128, 352
Mva1269I GAATGC 1 cut(s) 352
MvaI CCWGG 1 cut(s) 352
MvnI CGCG 1 cut(s) 358
MwoI GCNNNNNNNGC 2 cut(s) 14, 210
NciI CCSGG 1 cut(s) 128
NdeII GATC 3 cut(s) 568, 610, 673
NlaIII CATG 3 cut(s) 217, 575, 610
NlaIV GGNNCC 1 cut(s) 132
NmeAIII GCCGAG 1 cut(s) 549
NspI RCATGY 1 cut(s) 217
PaeI GCATGC 1 cut(s) 217
PctI GAATGC 1 cut(s) 352
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 2 cut(s) 96, 603
PkrI GCNGC 2 cut(s) 301, 304
PleI GAGTC 1 cut(s) 499
PpsI GAGTC 1 cut(s) 499
Psp6I CCWGG 1 cut(s) 350
PspFI CCCAGC 1 cut(s) 17
PspGI CCWGG 1 cut(s) 350
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 548
PsuI RGATCY 1 cut(s) 673
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 326
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 2 cut(s) 300, 303
Sau3AI GATC 3 cut(s) 568, 610, 673
Sau96I GGNCC 1 cut(s) 548
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 2 cut(s) 128, 352
SduI GDGCHC 1 cut(s) 133
SetI ASST 5 cut(s) 65, 126, 184, 277, 530
SfaNI GCATC 1 cut(s) 213
SinI GGWCC 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 326
SphI GCATGC 1 cut(s) 217
Sse9I AATT 3 cut(s) 103, 232, 485
SsiI CCGC 2 cut(s) 264, 303
SspMI CTAG 2 cut(s) 189, 677
StyD4I CCNGG 2 cut(s) 126, 350
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 3 cut(s) 14, 538, 620
TaiI ACGT 1 cut(s) 277
TaqI TCGA 6 cut(s) 69, 207, 268, 294, 409, 613
TaqII GACCGA 2 cut(s) 565, 569
TasI AATT 3 cut(s) 103, 232, 485
TatI WGTACW 1 cut(s) 108
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 2 cut(s) 96, 603
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 2 cut(s) 224, 625
TseI GCWGC 1 cut(s) 299
TspDTI ATGAA 3 cut(s) 474, 513, 595
TspGWI ACGGA 1 cut(s) 615
TspRI CASTG 2 cut(s) 224, 625
VpaK11BI GGWCC 1 cut(s) 548
XbaI TCTAGA 1 cut(s) 676
XceI RCATGY 1 cut(s) 217
XmaJI CCTAGG 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 2 cut(s) 189, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.