Rmu_sc0000367.1_g000070

Plant transposon protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000367.1
N/A
Physical Location & Seq
Reverse (-)
301909 .. 302404
496 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 450 bp
atgggcgactttcttgaaaactgttcgaaatcttacaagccccaaggaaatcgagtttgcaaaggctcaagagggtttggtattgttagaggagctgctcgtgggtggcataaagaggacattcgatacatcatgttgacttgtattatattacacaacatgattgtcgaaaatgaacgacctgaagacagcaatgatgagttggagtccgatgatgaggaggataacaatatgtggcccagaattgatgaggtatgggagggaccaaccggtagagactttgatcctgttggtagagatgctcatcaaaggaacggattcatggaccgctccaacaaattagatctgagcatagtcactccaaccttcaggaagacctcattcaacacttttgggaatttcaaggcaataggagtatctagatctgcactttgtgtgtgttttatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

149

Amino Acids

17.04

Weight (kDa)

5.41

Isoelectric Point (pI)

27.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 26 - 61 5e-10 Plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 330
AciI CCGC 1 cut(s) 328
AclWI GGATC 1 cut(s) 278
AcsI RAATTY 1 cut(s) 397
AcuI CTGAAG 2 cut(s) 204, 352
AdeI CACNNNGTG 1 cut(s) 434
AgeI ACCGGT 1 cut(s) 269
AgsI TTSAA 3 cut(s) 17, 385, 403
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 270
AlwI GGATC 1 cut(s) 278
AoxI GGCC 1 cut(s) 236
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 397
AsiGI ACCGGT 1 cut(s) 269
Asp700I GAANNNNTTC 1 cut(s) 317
AspS9I GGNCC 3 cut(s) 237, 263, 325
AsuII TTCGAA 1 cut(s) 26
AvaII GGWCC 2 cut(s) 263, 325
BauI CACGAG 1 cut(s) 99
BbsI GAAGAC 2 cut(s) 192, 380
BbvI GCAGC 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 1 cut(s) 420
BglII AGATCT 2 cut(s) 343, 422
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme18I GGWCC 2 cut(s) 263, 325
BmgT120I GGNCC 3 cut(s) 237, 263, 325
BmiI GGNNCC 1 cut(s) 264
BmsI GCATC 1 cut(s) 289
BpiI GAAGAC 2 cut(s) 192, 380
Bpu14I TTCGAA 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 52
BsaBI GATNNNNATC 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 43
BsaWI WCCGGW 1 cut(s) 269
Bse118I RCCGGY 1 cut(s) 269
Bse3DI GCAATG 1 cut(s) 199
Bse8I GATNNNNATC 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 43
BseJI GATNNNNATC 1 cut(s) 303
BseMI GCAATG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 338
BseRI GAGGAG 2 cut(s) 105, 233
BseXI GCAGC 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 411
BshFI GGCC 1 cut(s) 238
BshTI ACCGGT 1 cut(s) 269
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 276
BsmAI GTCTC 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 1 cut(s) 238
Bsp119I TTCGAA 1 cut(s) 26
Bsp143I GATC 3 cut(s) 283, 343, 422
BspACI CCGC 1 cut(s) 328
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 264
BspPI GGATC 1 cut(s) 278
BspT104I TTCGAA 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 330
BsrDI GCAATG 1 cut(s) 199
BsrFI RCCGGY 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 3 cut(s) 283, 343, 422
BssSI CACGAG 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 43
Bst2BI CACGAG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 23
BstBI TTCGAA 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 347
BstKTI GATC 3 cut(s) 286, 346, 425
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 3 cut(s) 283, 343, 422
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 2 cut(s) 192, 380
BstX2I RGATCY 2 cut(s) 343, 422
BstYI RGATCY 2 cut(s) 343, 422
BsuRI GGCC 1 cut(s) 238
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 3 cut(s) 237, 263, 325
CspAI ACCGGT 1 cut(s) 269
CviAII CATG 3 cut(s) 133, 160, 322
CviJI RGCY 4 cut(s) 40, 66, 95, 238
CviKI_1 RGCY 4 cut(s) 40, 66, 95, 238
DdeI CTNAG 1 cut(s) 347
DpnI GATC 3 cut(s) 285, 345, 424
DpnII GATC 3 cut(s) 283, 343, 422
DraIII CACNNNGTG 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 43
Eco47I GGWCC 2 cut(s) 263, 325
Eco57I CTGAAG 2 cut(s) 204, 352
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 3 cut(s) 136, 163, 325
FaiI YATR 8 cut(s) 111, 134, 149, 161, 233, 256, 323, 353
FaqI GGGAC 1 cut(s) 276
FatI CATG 3 cut(s) 132, 159, 321
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 420
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 238
HapII CCGG 1 cut(s) 270
Hin1II CATG 3 cut(s) 136, 163, 325
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HinfI GANTC 2 cut(s) 206, 318
HpaII CCGG 1 cut(s) 270
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 2 cut(s) 211, 348
Hpy188III TCNNGA 4 cut(s) 14, 69, 370, 420
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 1 cut(s) 376
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 2 cut(s) 60, 428
HpyF3I CTNAG 1 cut(s) 347
Hsp92II CATG 3 cut(s) 136, 163, 325
Kzo9I GATC 3 cut(s) 283, 343, 422
LmnI GCTCC 2 cut(s) 92, 335
LpnPI CCDG 5 cut(s) 195, 253, 283, 300, 355
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 1 cut(s) 289
MaeI CTAG 1 cut(s) 420
MaeIII GTNAC 1 cut(s) 355
MalI GATC 3 cut(s) 285, 345, 424
MbiI CCGCTC 1 cut(s) 330
MboI GATC 3 cut(s) 283, 343, 422
MboII GAAGA 2 cut(s) 197, 385
MflI RGATCY 2 cut(s) 343, 422
MluCI AATT 3 cut(s) 243, 338, 397
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 3 cut(s) 183, 357, 386
MnlI CCTC 8 cut(s) 65, 83, 109, 211, 214, 244, 253, 388
MroXI GAANNNNTTC 1 cut(s) 317
MspI CCGG 1 cut(s) 270
NdeII GATC 3 cut(s) 283, 343, 422
NlaIII CATG 3 cut(s) 136, 163, 325
NlaIV GGNNCC 1 cut(s) 264
NmuCI GTSAC 1 cut(s) 355
NspV TTCGAA 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 318
PinAI ACCGGT 1 cut(s) 269
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 3 cut(s) 237, 263, 325
PsuI RGATCY 2 cut(s) 343, 422
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 3 cut(s) 283, 343, 422
Sau96I GGNCC 3 cut(s) 237, 263, 325
SchI GAGTC 1 cut(s) 215
SetI ASST 5 cut(s) 97, 184, 255, 368, 380
SfaNI GCATC 1 cut(s) 289
SfuI TTCGAA 1 cut(s) 26
SinI GGWCC 2 cut(s) 263, 325
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 3 cut(s) 243, 338, 397
SsiI CCGC 1 cut(s) 328
SspMI CTAG 1 cut(s) 420
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 4 cut(s) 26, 52, 124, 168
TasI AATT 3 cut(s) 243, 338, 397
TfiI GAWTC 1 cut(s) 318
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 2 cut(s) 189, 310
TspGWI ACGGA 1 cut(s) 330
VpaK11BI GGWCC 2 cut(s) 263, 325
XapI RAATTY 1 cut(s) 397
XbaI TCTAGA 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.