Rmu_sc0000367.1_g000108

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000367.1
N/A
Physical Location & Seq
Reverse (-)
468768 .. 469727
960 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 789 bp
atgttgaatgaacctagactcgactttcccatgcttgactcaacaggctcggattatcacagttgggtaaccgatgttgagaaccacctcacttcaaagggaatattacccataatccaggaacctaacccggatcttgttcaatgtaacaatctgcgctttgctgatgaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagattgtggagatgtcaatcaaaccatagaggacttcaaagctgaagatgaagtgcacaaggatgctacagactttgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

262

Amino Acids

32.58

Weight (kDa)

4.05

Isoelectric Point (pI)

239.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 141
AcuI CTGAAG 1 cut(s) 771
AgsI TTSAA 4 cut(s) 7, 96, 143, 745
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 1 cut(s) 749
AluI AGCT 1 cut(s) 749
Alw21I GWGCWC 1 cut(s) 765
Alw44I GTGCAC 1 cut(s) 761
AlwI GGATC 1 cut(s) 141
ApaLI GTGCAC 1 cut(s) 761
AspLEI GCGC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 765
Bbv12I GWGCWC 1 cut(s) 765
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 1 cut(s) 131
BfaI CTAG 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 774
Bme1390I CCNGG 2 cut(s) 119, 131
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 2 cut(s) 119, 131
BmsI GCATC 1 cut(s) 760
BpuMI CCSGG 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 723
Bse8I GATNNNNATC 1 cut(s) 723
BseBI CCWGG 1 cut(s) 119
BseGI GGATG 1 cut(s) 775
BseJI GATNNNNATC 1 cut(s) 723
BseSI GKGCMC 1 cut(s) 765
BsiHKAI GWGCWC 1 cut(s) 765
BsiSI CCGG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 765
Bsp143I GATC 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 123
BspPI GGATC 1 cut(s) 141
BssMI GATC 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 62
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 775
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstNI CCWGG 1 cut(s) 119
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 117, 129
BstSFI CTRYAG 1 cut(s) 774
BstSLI GKGCMC 1 cut(s) 765
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BtsCI GGATG 1 cut(s) 775
CfoI GCGC 1 cut(s) 159
CviAII CATG 1 cut(s) 31
CviJI RGCY 2 cut(s) 48, 749
CviKI_1 RGCY 2 cut(s) 48, 749
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 771
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 34
FaiI YATR 3 cut(s) 32, 113, 734
FatI CATG 1 cut(s) 30
FokI GGATG 1 cut(s) 782
FspBI CTAG 1 cut(s) 15
GlaI GCGC 1 cut(s) 158
HapII CCGG 1 cut(s) 131
HhaI GCGC 1 cut(s) 159
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HinfI GANTC 2 cut(s) 18, 38
HpaII CCGG 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 763
Hpy188I TCNGA 1 cut(s) 52
Hpy8I GTNNAC 1 cut(s) 763
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 763
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 1 cut(s) 157
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 4 cut(s) 30, 104, 131, 144
LweI GCATC 1 cut(s) 760
MaeI CTAG 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 67, 146
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 765
MlyI GAGTC 2 cut(s) 12, 32
MnlI CCTC 2 cut(s) 98, 730
MslI CAYNNNNRTG 1 cut(s) 768
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 2 cut(s) 119, 131
MvaI CCWGG 1 cut(s) 119
NciI CCSGG 1 cut(s) 131
NdeII GATC 1 cut(s) 133
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 123
PfoI TCCNGGA 1 cut(s) 117
PleI GAGTC 2 cut(s) 12, 32
PpsI GAGTC 2 cut(s) 12, 32
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 67
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 123
PsuI RGATCY 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 768
Sau3AI GATC 1 cut(s) 133
SchI GAGTC 2 cut(s) 12, 32
ScrFI CCNGG 2 cut(s) 119, 131
SduI GDGCHC 1 cut(s) 765
SetI ASST 4 cut(s) 16, 90, 127, 751
SfaNI GCATC 1 cut(s) 760
SfcI CTRYAG 1 cut(s) 774
SmiMI CAYNNNNRTG 1 cut(s) 768
SspI AATATT 1 cut(s) 105
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 2 cut(s) 117, 129
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 1 cut(s) 21
TspDTI ATGAA 3 cut(s) 24, 183, 771
VneI GTGCAC 1 cut(s) 761
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.