Rmu_sc0000370.1_g000016

Sugar (and other) transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000370.1
N/A
Physical Location & Seq
Forward (+)
67868 .. 70907
3040 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1104 bp
atgcaagctccaaatctccaccgctccattctaaacctatcaaaccccaaccctacacgtgtcaaacatcccagatctactaggtcccacaacaacctcgttccaaacctaactgggttgggctctttgaatctgtttcgatccattgtccaatcctcctactacccacttgctacttatcttgctacgcgtcacaaccgagcccatgtcattgctcttggtgcttatctttctatgggctgctgccacttttctcgctggcttcttcatgttgctattttgagaggtttaaatggtactggaattgtcatagtcattcctgccattcagtcacttgttgttgactcaacagatgataacaaccgtggtacaacatttggatgccctcaaattccaacatccaccgtcccacatattaaagccctagcctcaaggaacccagaaccggcggcggaaccactggaacaagccaaaaagcccctgaatcgtgctgccgagcctctgtcaacagccctgcaagcatatgccgagaaccctgcacgcttcctaccgagtgctgccacatttgccgagaagcccagcgcgtacctatcgacacttgcaagagccgcgcagcagccctgcaacagccctgcagcagctctgcacaagccctgtaaggctctgccacctccgcctgcagccaccaccagctctgcttcagccaccggcgatcaccgtccgaccaccaattttccggcgatctccggcacagttttccggtcatctacattaacttttttcggtcaaaatttctggccaattttcaaggggagaccaaaagccgaactgtgggggttcgtgctaactccaagcttggagcttgtagattcctccaaactagagatgagtaattacctgaacaagttgagcttcgctccactagagacaacaggcgcaggataccacaagtgggtccgtgatgtgcgccagcatcttaaggatgatgggatcctgagtacgatccaagagccaagtcaggacgtgcttactcctcaacaagctgctgcttttgaagcaaatagtgctacgagagaggctaatgaaaagccatcattctcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0002165 GO:0003006 GO:0003376 GO:0003674 GO:0005215 GO:0005319 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005770 GO:0005773 GO:0005774 GO:0006810 GO:0006869 GO:0006897 GO:0006915 GO:0006928 GO:0006950 GO:0006996 GO:0007033 GO:0007034 GO:0007040 GO:0007041 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007399 GO:0007416 GO:0007417 GO:0007528 GO:0007610 GO:0007617 GO:0007618 GO:0007619 GO:0008150 GO:0008219 GO:0008333 GO:0008347 GO:0008582 GO:0009267 GO:0009605 GO:0009653 GO:0009791 GO:0009886 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010001 GO:0010008 GO:0010623 GO:0010646 GO:0010648 GO:0010876 GO:0010941 GO:0012501 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016477 GO:0019098 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031090 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031902 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0033554 GO:0035193 GO:0036465 GO:0040007 GO:0040008 GO:0040011 GO:0042063 GO:0042594 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045476 GO:0045477 GO:0045595 GO:0045924 GO:0046624 GO:0046907 GO:0048468 GO:0048477 GO:0048488 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048609 GO:0048638 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0050808 GO:0050896 GO:0051124 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051641 GO:0051649 GO:0051674 GO:0051704 GO:0051716 GO:0051960 GO:0051963 GO:0060180 GO:0060284 GO:0065007 GO:0065008 GO:0071496 GO:0071702 GO:0071840 GO:0080171 GO:0090092 GO:0090097 GO:0090099 GO:0090101 GO:0090520 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098852 GO:0099003 GO:0099504 GO:1902742 GO:1904396 GO:1904748 GO:1905879 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

367

Amino Acids

39.76

Weight (kDa)

9.57

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 24
AccII CGCG 3 cut(s) 190, 584, 611
AciI CCGC 5 cut(s) 22, 449, 452, 609, 674
AclWI GGATC 4 cut(s) 135, 985, 997, 998
AcoI YGGCCR 1 cut(s) 797
AcsI RAATTY 2 cut(s) 390, 790
AcuI CTGAAG 1 cut(s) 684
AcvI CACGTG 1 cut(s) 59
AfaI GTAC 4 cut(s) 298, 370, 587, 1000
AfiI CCNNNNNNNGG 3 cut(s) 445, 831, 952
AflII CTTAAG 1 cut(s) 977
AflIII ACRYGT 3 cut(s) 56, 58, 188
AgsI TTSAA 3 cut(s) 130, 808, 1055
AjiI CACGTC 1 cut(s) 1024
AluBI AGCT 7 cut(s) 8, 641, 693, 855, 862, 912, 1043
AluI AGCT 7 cut(s) 8, 641, 693, 855, 862, 912, 1043
Alw26I GTCTC 2 cut(s) 808, 920
AlwI GGATC 4 cut(s) 135, 985, 997, 998
AoxI GGCC 1 cut(s) 797
ApoI RAATTY 2 cut(s) 390, 790
AspLEI GCGC 4 cut(s) 584, 613, 938, 969
AspS9I GGNCC 2 cut(s) 84, 955
AsuHPI GGTGA 1 cut(s) 707
AvaII GGWCC 2 cut(s) 84, 955
BalI TGGCCA 1 cut(s) 799
BamHI GGATCC 1 cut(s) 990
BanII GRGCYC 2 cut(s) 125, 205
BauI CACGAG 1 cut(s) 1099
BbrPI CACGTG 1 cut(s) 59
BccI CCATC 2 cut(s) 980, 1099
BcgI CGANNNNNNTGC 2 cut(s) 518, 552
BciVI GTATCC 1 cut(s) 935
BcoDI GTCTC 2 cut(s) 808, 920
BfaI CTAG 4 cut(s) 81, 425, 881, 923
BfmI CTRYAG 2 cut(s) 633, 678
BfrI CTTAAG 1 cut(s) 977
BfuI GTATCC 1 cut(s) 935
BglII AGATCT 1 cut(s) 74
Bme18I GGWCC 2 cut(s) 84, 955
BmgBI CACGTC 1 cut(s) 1024
BmgT120I GGNCC 2 cut(s) 84, 955
BmiI GGNNCC 5 cut(s) 86, 437, 456, 956, 992
BmrI ACTGGG 1 cut(s) 123
BmsI GCATC 2 cut(s) 371, 982
BmuI ACTGGG 1 cut(s) 123
BplI GAGNNNNNCTC 2 cut(s) 901, 933
BpuEI CTTGAG 1 cut(s) 415
BsaAI YACGTR 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 808
BsaJI CCNNGG 1 cut(s) 364
BsaWI WCCGGW 1 cut(s) 759
Bsc4I CCNNNNNNNGG 3 cut(s) 445, 831, 952
Bse118I RCCGGY 2 cut(s) 445, 707
Bse1I ACTGG 3 cut(s) 118, 304, 465
Bse3DI GCAATG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 364
BseGI GGATG 4 cut(s) 67, 386, 398, 988
BseLI CCNNNNNNNGG 3 cut(s) 445, 831, 952
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 986
BseNI ACTGG 3 cut(s) 118, 304, 465
BseRI GAGGAG 1 cut(s) 1023
BseYI CCCAGC 1 cut(s) 578
BsgI GTGCAG 2 cut(s) 522, 629
Bsh1236I CGCG 3 cut(s) 190, 584, 611
BshFI GGCC 1 cut(s) 799
BsiSI CCGG 5 cut(s) 446, 708, 737, 747, 760
BslFI GGGAC 2 cut(s) 70, 392
BslI CCNNNNNNNGG 3 cut(s) 445, 831, 952
BsmAI GTCTC 2 cut(s) 808, 920
BsmFI GGGAC 2 cut(s) 70, 392
BsnI GGCC 1 cut(s) 799
Bso31I GGTCTC 1 cut(s) 808
Bsp1286I GDGCHC 2 cut(s) 125, 205
Bsp143I GATC 6 cut(s) 74, 140, 712, 741, 990, 1002
BspACI CCGC 5 cut(s) 22, 449, 452, 609, 674
BspANI GGCC 1 cut(s) 799
BspCNI CTCAG 1 cut(s) 987
BspFNI CGCG 3 cut(s) 190, 584, 611
BspLI GGNNCC 5 cut(s) 86, 437, 456, 956, 992
BspMAI CTGCAG 2 cut(s) 637, 682
BspPI GGATC 4 cut(s) 135, 985, 997, 998
BspTI CTTAAG 1 cut(s) 977
BspTNI GGTCTC 1 cut(s) 808
BsrBI CCGCTC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 210
BsrFI RCCGGY 2 cut(s) 445, 707
BsrI ACTGG 3 cut(s) 118, 304, 465
BssAI RCCGGY 2 cut(s) 445, 707
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 6 cut(s) 74, 140, 712, 741, 990, 1002
BssSI CACGAG 1 cut(s) 1099
Bst2BI CACGAG 1 cut(s) 1099
Bst4CI ACNGT 5 cut(s) 365, 406, 719, 754, 831
BstAFI CTTAAG 1 cut(s) 977
BstAPI GCANNNNNTGC 1 cut(s) 1064
BstBAI YACGTR 1 cut(s) 59
BstC8I GCNNGC 6 cut(s) 6, 260, 519, 541, 678, 971
BstDEI CTNAG 1 cut(s) 995
BstDSI CCRYGG 1 cut(s) 364
BstF5I GGATG 4 cut(s) 67, 386, 398, 988
BstFNI CGCG 3 cut(s) 190, 584, 611
BstHHI GCGC 4 cut(s) 584, 613, 938, 969
BstKTI GATC 6 cut(s) 77, 143, 715, 744, 993, 1005
BstMAI GTCTC 2 cut(s) 808, 920
BstMBI GATC 6 cut(s) 74, 140, 712, 741, 990, 1002
BstMWI GCNNNNNNNGC 7 cut(s) 221, 518, 566, 608, 673, 1055, 1064
BstSFI CTRYAG 2 cut(s) 633, 678
BstUI CGCG 3 cut(s) 190, 584, 611
BstX2I RGATCY 2 cut(s) 74, 990
BstYI RGATCY 2 cut(s) 74, 990
BsuI GTATCC 1 cut(s) 935
BsuRI GGCC 1 cut(s) 799
BtgI CCRYGG 1 cut(s) 364
BtrI CACGTC 1 cut(s) 1024
BtsCI GGATG 4 cut(s) 67, 386, 398, 988
BtsIMutI CAGTG 1 cut(s) 458
Cac8I GCNNGC 6 cut(s) 6, 260, 519, 541, 678, 971
CfoI GCGC 4 cut(s) 584, 613, 938, 969
Cfr10I RCCGGY 2 cut(s) 445, 707
Cfr13I GGNCC 2 cut(s) 84, 955
CseI GACGC 1 cut(s) 179
Csp6I GTAC 4 cut(s) 297, 369, 586, 999
CviAII CATG 2 cut(s) 206, 269
CviQI GTAC 4 cut(s) 297, 369, 586, 999
DdeI CTNAG 1 cut(s) 995
DpnI GATC 6 cut(s) 76, 142, 714, 743, 992, 1004
DpnII GATC 6 cut(s) 74, 140, 712, 741, 990, 1002
DraI TTTAAA 1 cut(s) 291
EaeI YGGCCR 1 cut(s) 797
EciI GGCGGA 2 cut(s) 467, 663
Eco24I GRGCYC 2 cut(s) 125, 205
Eco31I GGTCTC 1 cut(s) 808
Eco47I GGWCC 2 cut(s) 84, 955
Eco57I CTGAAG 1 cut(s) 684
Eco72I CACGTG 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 84
EcoT38I GRGCYC 2 cut(s) 125, 205
FaeI CATG 2 cut(s) 209, 272
FaiI YATR 7 cut(s) 207, 236, 270, 311, 414, 523, 525
FalI AAGNNNNNCTT 2 cut(s) 896, 928
FaqI GGGAC 2 cut(s) 70, 392
FatI CATG 2 cut(s) 205, 268
FauNDI CATATG 1 cut(s) 523
FokI GGATG 4 cut(s) 54, 385, 393, 995
FriOI GRGCYC 2 cut(s) 125, 205
FspBI CTAG 4 cut(s) 81, 425, 881, 923
GlaI GCGC 4 cut(s) 583, 612, 937, 968
GsaI CCCAGC 1 cut(s) 582
HaeIII GGCC 1 cut(s) 799
HapII CCGG 5 cut(s) 446, 708, 737, 747, 760
HgaI GACGC 1 cut(s) 179
HhaI GCGC 4 cut(s) 584, 613, 938, 969
Hin1II CATG 2 cut(s) 209, 272
Hin6I GCGC 4 cut(s) 582, 611, 936, 967
HinP1I GCGC 4 cut(s) 582, 611, 936, 967
HincII GTYRAC 2 cut(s) 343, 507
HindII GTYRAC 2 cut(s) 343, 507
HindIII AAGCTT 1 cut(s) 853
HinfI GANTC 4 cut(s) 130, 344, 484, 869
HpaII CCGG 5 cut(s) 446, 708, 737, 747, 760
HphI GGTGA 1 cut(s) 707
Hpy166II GTNNAC 2 cut(s) 343, 507
Hpy188I TCNGA 1 cut(s) 723
Hpy188III TCNNGA 3 cut(s) 994, 1019, 1101
Hpy8I GTNNAC 2 cut(s) 343, 507
HpyCH4III ACNGT 5 cut(s) 365, 406, 719, 754, 831
HpyCH4IV ACGT 2 cut(s) 58, 1023
HpyCH4V TGCA 8 cut(s) 4, 517, 539, 602, 624, 635, 646, 680
HpyF10VI GCNNNNNNNGC 7 cut(s) 221, 518, 566, 608, 673, 1055, 1064
HpyF3I CTNAG 1 cut(s) 995
HpySE526I ACGT 2 cut(s) 58, 1023
Hsp92II CATG 2 cut(s) 209, 272
HspAI GCGC 4 cut(s) 582, 611, 936, 967
Kzo9I GATC 6 cut(s) 74, 140, 712, 741, 990, 1002
LmnI GCTCC 4 cut(s) 13, 29, 859, 922
LweI GCATC 2 cut(s) 371, 982
MaeI CTAG 4 cut(s) 81, 425, 881, 923
MaeII ACGT 2 cut(s) 58, 1023
MaeIII GTNAC 2 cut(s) 191, 330
MalI GATC 6 cut(s) 76, 142, 714, 743, 992, 1004
MbiI CCGCTC 1 cut(s) 24
MboI GATC 6 cut(s) 74, 140, 712, 741, 990, 1002
MboII GAAGA 1 cut(s) 257
MflI RGATCY 2 cut(s) 74, 990
MhlI GDGCHC 2 cut(s) 125, 205
MlsI TGGCCA 1 cut(s) 799
MluCI AATT 6 cut(s) 303, 390, 730, 790, 801, 892
MluI ACGCGT 1 cut(s) 188
MluNI TGGCCA 1 cut(s) 799
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 2 cut(s) 419, 746
Mox20I TGGCCA 1 cut(s) 799
MscI TGGCCA 1 cut(s) 799
MseI TTAA 4 cut(s) 290, 417, 773, 978
MslI CAYNNNNRTG 2 cut(s) 379, 1099
Msp20I TGGCCA 1 cut(s) 799
MspCI CTTAAG 1 cut(s) 977
MspI CCGG 5 cut(s) 446, 708, 737, 747, 760
MvnI CGCG 3 cut(s) 190, 584, 611
MwoI GCNNNNNNNGC 7 cut(s) 221, 518, 566, 608, 673, 1055, 1064
NdeI CATATG 1 cut(s) 523
NdeII GATC 6 cut(s) 74, 140, 712, 741, 990, 1002
NlaIII CATG 2 cut(s) 209, 272
NlaIV GGNNCC 5 cut(s) 86, 437, 456, 956, 992
NmeAIII GCCGAG 3 cut(s) 520, 553, 595
NmuCI GTSAC 2 cut(s) 191, 330
PfeI GAWTC 3 cut(s) 130, 484, 869
PleI GAGTC 1 cut(s) 338
PmaCI CACGTG 1 cut(s) 59
PmlI CACGTG 1 cut(s) 59
PpsI GAGTC 1 cut(s) 338
Ppu21I YACGTR 1 cut(s) 59
PpuMI RGGWCCY 1 cut(s) 84
Psp5II RGGWCCY 1 cut(s) 84
PspCI CACGTG 1 cut(s) 59
PspFI CCCAGC 1 cut(s) 578
PspN4I GGNNCC 5 cut(s) 86, 437, 456, 956, 992
PspPI GGNCC 2 cut(s) 84, 955
PspPPI RGGWCCY 1 cut(s) 84
PstI CTGCAG 2 cut(s) 637, 682
PsuI RGATCY 2 cut(s) 74, 990
RsaI GTAC 4 cut(s) 298, 370, 587, 1000
RsaNI GTAC 4 cut(s) 297, 369, 586, 999
RseI CAYNNNNRTG 2 cut(s) 379, 1099
SaqAI TTAA 4 cut(s) 290, 417, 773, 978
Sau3AI GATC 6 cut(s) 74, 140, 712, 741, 990, 1002
Sau96I GGNCC 2 cut(s) 84, 955
SchI GAGTC 1 cut(s) 338
SduI GDGCHC 2 cut(s) 125, 205
SfaNI GCATC 2 cut(s) 371, 982
SfcI CTRYAG 2 cut(s) 633, 678
SgrAI CRCCGGYG 1 cut(s) 707
SinI GGWCC 2 cut(s) 84, 955
SmiMI CAYNNNNRTG 2 cut(s) 379, 1099
SmlI CTYRAG 2 cut(s) 430, 977
SmoI CTYRAG 2 cut(s) 430, 977
Sse9I AATT 6 cut(s) 303, 390, 730, 790, 801, 892
SsiI CCGC 5 cut(s) 22, 449, 452, 609, 674
SspMI CTAG 4 cut(s) 81, 425, 881, 923
TaaI ACNGT 5 cut(s) 365, 406, 719, 754, 831
TaiI ACGT 2 cut(s) 61, 1026
TaqI TCGA 2 cut(s) 139, 593
TaqII GACCGA 1 cut(s) 773
TasI AATT 6 cut(s) 303, 390, 730, 790, 801, 892
TauI GCSGC 2 cut(s) 452, 611
TfiI GAWTC 3 cut(s) 130, 484, 869
Tru1I TTAA 4 cut(s) 290, 417, 773, 978
Tru9I TTAA 4 cut(s) 290, 417, 773, 978
TscAI CASTG 1 cut(s) 465
TseFI GTSAC 2 cut(s) 191, 330
Tsp45I GTSAC 2 cut(s) 191, 330
TspDTI ATGAA 2 cut(s) 257, 1098
TspGWI ACGGA 1 cut(s) 947
TspRI CASTG 1 cut(s) 465
Vha464I CTTAAG 1 cut(s) 977
VpaK11BI GGWCC 2 cut(s) 84, 955
XapI RAATTY 2 cut(s) 390, 790
XspI CTAG 4 cut(s) 81, 425, 881, 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.