Rmu_sc0000382.1_g000020

Dynein light chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000382.1
N/A
Physical Location & Seq
Forward (+)
101373 .. 103132
1760 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 525 bp
atgttagaaggcaaggccgtgattattgagactgatatgcttcaaaacatgcagcagaatgcagttgacttggcatcaaaagccctagatttcttcgatgtaaccgaagccactgagataggccgcttcattaagaagcattttgacagtacgtatggacctggatggcagtgtattgtaggaacagattttggttcgtttgttacgcattgtcacggaggtagcactgccgctcaacctcgccgccaccgtacagccacatccgttgctgcctcagccgccgcgactagtatcgccatgctgccatggaactaccgaacctggcaacccggtccgcaccattacgaaactgacgacgatgtaacgcaccagatcaaaggctccacgatccaaacgtctcacgccgggcttggaaacccacaacgaagcacctgccaccgtgaattagagacgacacccagagacctgcgccaaaaccatcagaccgaagcctcaagcggaaaacctttctcccatgaaaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

174

Amino Acids

19.23

Weight (kDa)

6.23

Isoelectric Point (pI)

32.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 5 - 73 7.2e-24 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 440
Acc36I ACCTGC 2 cut(s) 440, 474
AccBSI CCGCTC 1 cut(s) 233
AccII CGCG 1 cut(s) 284
AciI CCGC 7 cut(s) 124, 231, 244, 279, 282, 335, 498
AclWI GGATC 1 cut(s) 382
AfaI GTAC 2 cut(s) 151, 253
AgsI TTSAA 1 cut(s) 44
AhlI ACTAGT 1 cut(s) 287
AjnI CCWGG 2 cut(s) 160, 320
Alw26I GTCTC 4 cut(s) 23, 402, 443, 456
AlwI GGATC 1 cut(s) 382
AoxI GGCC 2 cut(s) 15, 121
ApeKI GCWGC 3 cut(s) 52, 269, 301
AspLEI GCGC 1 cut(s) 471
AspS9I GGNCC 2 cut(s) 158, 332
AsuC2I CCSGG 2 cut(s) 330, 406
AvaII GGWCC 2 cut(s) 158, 332
BbvCI CCTCAGC 1 cut(s) 274
BbvI GCAGC 3 cut(s) 64, 256, 288
BccI CCATC 2 cut(s) 159, 486
BceAI ACGGC 1 cut(s) 2
BcgI CGANNNNNNTGC 2 cut(s) 414, 448
BciT130I CCWGG 2 cut(s) 162, 322
BcnI CCSGG 2 cut(s) 330, 406
BcoDI GTCTC 4 cut(s) 23, 402, 443, 456
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 2 cut(s) 86, 288
BfuAI ACCTGC 2 cut(s) 440, 474
BisI GCNGC 8 cut(s) 53, 124, 231, 244, 270, 279, 282, 302
BlsI GCNGC 8 cut(s) 54, 125, 232, 245, 271, 280, 283, 303
Bme1390I CCNGG 4 cut(s) 162, 322, 330, 406
Bme18I GGWCC 2 cut(s) 158, 332
BmgT120I GGNCC 2 cut(s) 158, 332
BmiI GGNNCC 1 cut(s) 382
BmrFI CCNGG 4 cut(s) 162, 322, 330, 406
BmsI GCATC 1 cut(s) 83
Bpu10I CCTNAGC 1 cut(s) 274
BpuEI CTTGAG 1 cut(s) 478
BpuMI CCSGG 2 cut(s) 330, 406
BsaAI YACGTR 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 1 cut(s) 305
BseBI CCWGG 2 cut(s) 162, 322
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 2 cut(s) 170, 260
BseMII CTCAG 2 cut(s) 105, 288
BseXI GCAGC 3 cut(s) 64, 256, 288
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 2 cut(s) 17, 123
BsiSI CCGG 2 cut(s) 330, 405
BsmAI GTCTC 4 cut(s) 23, 402, 443, 456
BsmBI CGTCTC 2 cut(s) 402, 443
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 2 cut(s) 17, 123
Bso31I GGTCTC 1 cut(s) 456
Bsp143I GATC 2 cut(s) 372, 387
Bsp19I CCATGG 1 cut(s) 305
BspACI CCGC 7 cut(s) 124, 231, 244, 279, 282, 335, 498
BspANI GGCC 2 cut(s) 17, 123
BspCNI CTCAG 2 cut(s) 106, 287
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 382
BspMI ACCTGC 2 cut(s) 440, 474
BspPI GGATC 1 cut(s) 382
BspTNI GGTCTC 1 cut(s) 456
BsrBI CCGCTC 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 2 cut(s) 372, 387
BssT1I CCWWGG 1 cut(s) 305
Bst2UI CCWGG 2 cut(s) 162, 322
Bst4CI ACNGT 3 cut(s) 149, 251, 440
BstBAI YACGTR 1 cut(s) 153
BstDEI CTNAG 2 cut(s) 114, 274
BstDSI CCRYGG 1 cut(s) 305
BstF5I GGATG 2 cut(s) 170, 260
BstFNI CGCG 1 cut(s) 284
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 2 cut(s) 375, 390
BstMAI GTCTC 4 cut(s) 23, 402, 443, 456
BstMBI GATC 2 cut(s) 372, 387
BstMWI GCNNNNNNNGC 3 cut(s) 80, 275, 278
BstNI CCWGG 2 cut(s) 162, 322
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 4 cut(s) 160, 320, 328, 404
BstSNI TACGTA 1 cut(s) 153
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 3 cut(s) 64, 256, 288
BsuRI GGCC 2 cut(s) 17, 123
BtgI CCRYGG 1 cut(s) 305
BtsCI GGATG 2 cut(s) 170, 260
BtsI GCAGTG 2 cut(s) 176, 225
BtsIMutI CAGTG 3 cut(s) 111, 176, 225
BveI ACCTGC 2 cut(s) 440, 474
CfoI GCGC 1 cut(s) 471
Cfr13I GGNCC 2 cut(s) 158, 332
CpoI CGGWCCG 1 cut(s) 332
Csp6I GTAC 2 cut(s) 150, 252
CspCI CAANNNNNGTGG 2 cut(s) 247, 282
CspI CGGWCCG 1 cut(s) 332
CviAII CATG 4 cut(s) 49, 298, 306, 515
CviJI RGCY 9 cut(s) 17, 83, 110, 123, 257, 278, 381, 409, 491
CviKI_1 RGCY 9 cut(s) 17, 83, 110, 123, 257, 278, 381, 409, 491
CviQI GTAC 2 cut(s) 150, 252
DdeI CTNAG 2 cut(s) 114, 274
DpnI GATC 2 cut(s) 374, 389
DpnII GATC 2 cut(s) 372, 387
Eco105I TACGTA 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 305
Eco31I GGTCTC 1 cut(s) 456
Eco47I GGWCC 2 cut(s) 158, 332
EcoRII CCWGG 2 cut(s) 160, 320
EcoT14I CCWWGG 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 305
Esp3I CGTCTC 2 cut(s) 402, 443
FaeI CATG 4 cut(s) 52, 301, 309, 518
FaiI YATR 6 cut(s) 38, 50, 156, 299, 307, 516
FatI CATG 4 cut(s) 48, 297, 305, 514
Fnu4HI GCNGC 8 cut(s) 53, 124, 231, 244, 270, 279, 282, 302
FokI GGATG 2 cut(s) 177, 247
Fsp4HI GCNGC 8 cut(s) 53, 124, 231, 244, 270, 279, 282, 302
FspBI CTAG 2 cut(s) 86, 288
GlaI GCGC 1 cut(s) 470
GluI GCNGC 8 cut(s) 53, 124, 231, 244, 270, 279, 282, 302
HaeIII GGCC 2 cut(s) 17, 123
HapII CCGG 2 cut(s) 330, 405
HhaI GCGC 1 cut(s) 471
Hin1II CATG 4 cut(s) 52, 301, 309, 518
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HpaII CCGG 2 cut(s) 330, 405
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 483
Hpy8I GTNNAC 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 359
HpyCH4III ACNGT 3 cut(s) 149, 251, 440
HpyCH4IV ACGT 2 cut(s) 152, 395
HpyCH4V TGCA 2 cut(s) 52, 62
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 275, 278
HpyF3I CTNAG 2 cut(s) 114, 274
HpySE526I ACGT 2 cut(s) 152, 395
Hsp92II CATG 4 cut(s) 52, 301, 309, 518
HspAI GCGC 1 cut(s) 469
Kzo9I GATC 2 cut(s) 372, 387
LmnI GCTCC 1 cut(s) 386
Lsp1109I GCAGC 3 cut(s) 64, 256, 288
LweI GCATC 1 cut(s) 83
MaeI CTAG 2 cut(s) 86, 288
MaeII ACGT 2 cut(s) 152, 395
MaeIII GTNAC 4 cut(s) 100, 202, 212, 361
MalI GATC 2 cut(s) 374, 389
MbiI CCGCTC 1 cut(s) 233
MboI GATC 2 cut(s) 372, 387
MboII GAAGA 1 cut(s) 85
MluCI AATT 1 cut(s) 443
MnlI CCTC 4 cut(s) 212, 249, 283, 502
MseI TTAA 1 cut(s) 132
MspI CCGG 2 cut(s) 330, 405
MspR9I CCNGG 4 cut(s) 162, 322, 330, 406
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 2 cut(s) 162, 322
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 3 cut(s) 80, 275, 278
NciI CCSGG 2 cut(s) 330, 406
NcoI CCATGG 1 cut(s) 305
NdeII GATC 2 cut(s) 372, 387
NlaIII CATG 4 cut(s) 52, 301, 309, 518
NlaIV GGNNCC 1 cut(s) 382
NmuCI GTSAC 1 cut(s) 212
NspI RCATGY 1 cut(s) 52
PaqCI CACCTGC 1 cut(s) 440
PcsI WCGNNNNNNNCGW 4 cut(s) 102, 247, 351, 392
PctI GAATGC 1 cut(s) 64
PkrI GCNGC 8 cut(s) 54, 125, 232, 245, 271, 280, 283, 303
Ppu21I YACGTR 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 160, 320
PspGI CCWGG 2 cut(s) 160, 320
PspN4I GGNNCC 1 cut(s) 382
PspPI GGNCC 2 cut(s) 158, 332
RsaI GTAC 2 cut(s) 151, 253
RsaNI GTAC 2 cut(s) 150, 252
Rsr2I CGGWCCG 1 cut(s) 332
RsrII CGGWCCG 1 cut(s) 332
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 8 cut(s) 53, 124, 231, 244, 270, 279, 282, 302
Sau3AI GATC 2 cut(s) 372, 387
Sau96I GGNCC 2 cut(s) 158, 332
ScrFI CCNGG 4 cut(s) 162, 322, 330, 406
SetI ASST 9 cut(s) 155, 163, 223, 241, 323, 398, 434, 468, 508
SfaNI GCATC 1 cut(s) 83
SinI GGWCC 2 cut(s) 158, 332
SmlI CTYRAG 1 cut(s) 493
SmoI CTYRAG 1 cut(s) 493
SnaBI TACGTA 1 cut(s) 153
SpeI ACTAGT 1 cut(s) 287
Sse9I AATT 1 cut(s) 443
SsiI CCGC 7 cut(s) 124, 231, 244, 279, 282, 335, 498
SspMI CTAG 2 cut(s) 86, 288
StyD4I CCNGG 4 cut(s) 160, 320, 328, 404
StyI CCWWGG 1 cut(s) 305
TaaI ACNGT 3 cut(s) 149, 251, 440
TaiI ACGT 2 cut(s) 155, 398
TaqI TCGA 1 cut(s) 96
TaqII GACCGA 1 cut(s) 500
TasI AATT 1 cut(s) 443
TauI GCSGC 5 cut(s) 126, 233, 246, 281, 284
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 3 cut(s) 118, 176, 232
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 3 cut(s) 52, 269, 301
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 118
TspGWI ACGGA 2 cut(s) 231, 253
TspRI CASTG 3 cut(s) 118, 176, 232
VpaK11BI GGWCC 2 cut(s) 158, 332
XceI RCATGY 1 cut(s) 52
XspI CTAG 2 cut(s) 86, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.