Rmu_sc0000385.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000385.1
N/A
Physical Location & Seq
Forward (+)
73512 .. 73904
393 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 393 bp
atgtcgaaacttgactttcctgcacttacctcaactggctcggaatatcatagttgggccacggatgttgagcaccatctcacttcaaaagggatcctacccttaattcaagctcctaatcctactctcatatttgagcgtacggctacgaacaatgccaccgccctcatcttgatgaggcgccacatggataaatcactccgactggagtacatggcaatcaaggatgctagagaattatgggtcgcgctagaagagcgatttggtaatatcaaggataccctcctccctgacttgaaagttcaatggggcaatctacgattcgcccacttcaagtctgtagctgaatataattactcgaaacgttttattttcgaggggttaagcagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

130

Amino Acids

14.98

Weight (kDa)

8.04

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 180
AccII CGCG 1 cut(s) 248
AciI CCGC 1 cut(s) 162
AclI AACGTT 1 cut(s) 364
AclWI GGATC 2 cut(s) 88, 101
AcyI GRCGYC 1 cut(s) 181
AfaI GTAC 2 cut(s) 142, 212
AgsI TTSAA 5 cut(s) 87, 110, 298, 305, 334
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AluBI AGCT 2 cut(s) 113, 344
AluI AGCT 2 cut(s) 113, 344
Alw21I GWGCWC 1 cut(s) 75
AlwI GGATC 2 cut(s) 88, 101
AoxI GGCC 1 cut(s) 57
AspLEI GCGC 2 cut(s) 183, 250
AspS9I GGNCC 1 cut(s) 57
BamHI GGATCC 1 cut(s) 93
BanI GGYRCC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 75
BccI CCATC 1 cut(s) 84
BceAI ACGGC 1 cut(s) 159
BciVI GTATCC 1 cut(s) 271
BfaI CTAG 2 cut(s) 231, 251
BfmI CTRYAG 1 cut(s) 339
BfoI RGCGCY 1 cut(s) 184
BfuI GTATCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 2 cut(s) 95, 182
BmsI GCATC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 227
BsaHI GRCGYC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 60
Bse1I ACTGG 2 cut(s) 40, 210
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 2 cut(s) 70, 232
BseNI ACTGG 2 cut(s) 40, 210
BseRI GAGGAG 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 6
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 75
BsiWI CGTACG 1 cut(s) 140
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 1 cut(s) 93
BspACI CCGC 1 cut(s) 162
BspANI GGCC 1 cut(s) 59
BspFNI CGCG 1 cut(s) 248
BspLI GGNNCC 2 cut(s) 95, 182
BspPI GGATC 2 cut(s) 88, 101
BspQI GCTCTTC 1 cut(s) 249
BspT107I GGYRCC 1 cut(s) 180
BsrI ACTGG 2 cut(s) 40, 210
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 93
BssNI GRCGYC 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 181
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 70, 232
BstFNI CGCG 1 cut(s) 248
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 2 cut(s) 183, 250
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstSFI CTRYAG 1 cut(s) 339
BstUI CGCG 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BsuI GTATCC 1 cut(s) 271
BsuRI GGCC 1 cut(s) 59
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 2 cut(s) 70, 232
CfoI GCGC 2 cut(s) 183, 250
Cfr13I GGNCC 1 cut(s) 57
Csp6I GTAC 2 cut(s) 141, 211
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 2 cut(s) 187, 214
CviJI RGCY 5 cut(s) 39, 59, 113, 146, 344
CviKI_1 RGCY 5 cut(s) 39, 59, 113, 146, 344
CviQI GTAC 2 cut(s) 141, 211
DinI GGCGCC 1 cut(s) 182
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
EgeI GGCGCC 1 cut(s) 182
EheI GGCGCC 1 cut(s) 182
FaeI CATG 2 cut(s) 190, 217
FaiI YATR 6 cut(s) 51, 131, 188, 215, 241, 351
FatI CATG 2 cut(s) 186, 213
FokI GGATG 2 cut(s) 77, 239
FspBI CTAG 2 cut(s) 231, 251
GlaI GCGC 2 cut(s) 182, 249
GsuI CTGGAG 1 cut(s) 227
HaeII RGCGCY 1 cut(s) 184
HaeIII GGCC 1 cut(s) 59
HhaI GCGC 2 cut(s) 183, 250
Hin1I GRCGYC 1 cut(s) 181
Hin1II CATG 2 cut(s) 190, 217
Hin6I GCGC 2 cut(s) 181, 248
HinP1I GCGC 2 cut(s) 181, 248
HinfI GANTC 1 cut(s) 321
Hpy188I TCNGA 2 cut(s) 43, 203
Hpy188III TCNNGA 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpySE526I ACGT 1 cut(s) 364
Hsp92I GRCGYC 1 cut(s) 181
Hsp92II CATG 2 cut(s) 190, 217
HspAI GCGC 2 cut(s) 181, 248
KasI GGCGCC 1 cut(s) 180
Kzo9I GATC 1 cut(s) 93
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 4 cut(s) 21, 33, 191, 303
LweI GCATC 1 cut(s) 217
MaeI CTAG 2 cut(s) 231, 251
MaeII ACGT 1 cut(s) 364
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 1 cut(s) 266
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 3 cut(s) 105, 236, 352
Mly113I GGCGCC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 6 cut(s) 40, 171, 176, 293, 296, 370
MseI TTAA 2 cut(s) 104, 383
MslI CAYNNNNRTG 1 cut(s) 173
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 256
NarI GGCGCC 1 cut(s) 181
NdeII GATC 1 cut(s) 93
NlaIII CATG 2 cut(s) 190, 217
NlaIV GGNNCC 2 cut(s) 95, 182
PciSI GCTCTTC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 321
Pfl23II CGTACG 1 cut(s) 140
PluTI GGCGCC 1 cut(s) 184
Psp1406I AACGTT 1 cut(s) 364
PspLI CGTACG 1 cut(s) 140
PspN4I GGNNCC 2 cut(s) 95, 182
PspPI GGNCC 1 cut(s) 57
PsuI RGATCY 1 cut(s) 93
RsaI GTAC 2 cut(s) 142, 212
RsaNI GTAC 2 cut(s) 141, 211
RseI CAYNNNNRTG 1 cut(s) 173
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 2 cut(s) 104, 383
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 1 cut(s) 57
SduI GDGCHC 1 cut(s) 75
SetI ASST 4 cut(s) 32, 115, 346, 367
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 339
SfoI GGCGCC 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 173
Sse9I AATT 3 cut(s) 105, 236, 352
SsiI CCGC 1 cut(s) 162
SspDI GGCGCC 1 cut(s) 180
SspMI CTAG 2 cut(s) 231, 251
TaiI ACGT 1 cut(s) 367
TaqI TCGA 3 cut(s) 5, 359, 375
TasI AATT 3 cut(s) 105, 236, 352
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 1 cut(s) 321
Tru1I TTAA 2 cut(s) 104, 383
Tru9I TTAA 2 cut(s) 104, 383
TspGWI ACGGA 1 cut(s) 77
XspI CTAG 2 cut(s) 231, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.