Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000389.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

86375 .. 86782

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgatttcttcatacattggccacaagaagagtaaggaggctattgggttgtatgggaagatggtctttgatggagttttgccggatgagtacacgtttgcgagtgttttcaaggctttttcgggtctgggtcttgtatatgaagcgcgaagggcttatgggttgttagtggttttgggtctggaggtggcaaatgtgtttgttggtagtattcttgttgatatgtatgcaaagtttggtagaatgggggatgcaaggttggtgtcgaataacattggggagaaagatgttgttttgtttacggcactgattgttgtttattctcagcatggtgatgatggtgaagctcttgaggtttttggggacatgatcaaccaaggagttaagggtcagtttttgatgccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

135

Amino Acids

14.7

Weight (kDa)

5.28

Isoelectric Point (pI)

23.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	1 - 40	1.6e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	148
AcoI	YGGCCR	1 cut(s)	19
AfaI	GTAC	1 cut(s)	92
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	112
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
AoxI	GGCC	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	148
AsuHPI	GGTGA	2 cut(s)	344, 353
BalI	TGGCCA	1 cut(s)	21
BccI	CCATC	3 cut(s)	55, 65, 332
BceAI	ACGGC	1 cut(s)	318
BclI	TGATCA	1 cut(s)	369
BmsI	GCATC	2 cut(s)	241, 390
BpmI	CTGGAG	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	376
BseDI	CCNNGG	1 cut(s)	376
BseGI	GGATG	2 cut(s)	91, 256
BseMII	CTCAG	1 cut(s)	338
Bsh1236I	CGCG	1 cut(s)	148
BshFI	GGCC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	369
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	337
BspFNI	CGCG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	1 cut(s)	369
BssT1I	CCWWGG	1 cut(s)	376
Bst6I	CTCTTC	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	91, 256
BstFNI	CGCG	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	1 cut(s)	372
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstUI	CGCG	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	91, 256
BtsIMutI	CAGTG	1 cut(s)	305
CfoI	GCGC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	2 cut(s)	329, 367
CviJI	RGCY	5 cut(s)	21, 41, 116, 155, 347
CviKI_1	RGCY	5 cut(s)	21, 41, 116, 155, 347
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
EaeI	YGGCCR	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	2 cut(s)	332, 370
FaiI	YATR	9 cut(s)	13, 54, 139, 141, 159, 224, 228, 330, 368
FalI	AAGNNNNNCTT	2 cut(s)	50, 82
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	2 cut(s)	328, 366
FbaI	TGATCA	1 cut(s)	369
FokI	GGATG	2 cut(s)	98, 263
GlaI	GCGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	1 cut(s)	83
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	332, 370
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	2 cut(s)	344, 353
Hpy166II	GTNNAC	2 cut(s)	93, 300
Hpy188III	TCNNGA	2 cut(s)	182, 350
Hpy8I	GTNNAC	2 cut(s)	93, 300
HpyAV	CCTTC	1 cut(s)	144
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	2 cut(s)	230, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	332, 370
HspAI	GCGC	1 cut(s)	146
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	1 cut(s)	369
LpnPI	CCDG	3 cut(s)	96, 113, 167
LweI	GCATC	2 cut(s)	241, 390
MaeII	ACGT	1 cut(s)	95
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	2 cut(s)	40, 70
MlsI	TGGCCA	1 cut(s)	21
MluNI	TGGCCA	1 cut(s)	21
MnlI	CCTC	3 cut(s)	31, 178, 346
Mox20I	TGGCCA	1 cut(s)	21
MscI	TGGCCA	1 cut(s)	21
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	21
MspI	CCGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeII	GATC	1 cut(s)	369
NlaIII	CATG	2 cut(s)	332, 370
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	384
Sau3AI	GATC	1 cut(s)	369
SetI	ASST	5 cut(s)	98, 189, 260, 349, 357
SfaNI	GCATC	2 cut(s)	241, 390
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
StyI	CCWWGG	1 cut(s)	376
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	1 cut(s)	266
TatI	WGTACW	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	1 cut(s)	312
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.