Rmu_sc0000391.1_g000012

Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000391.1
N/A
Physical Location & Seq
Forward (+)
42460 .. 44200
1741 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 594 bp
atggacctggaaattgaagctttggatggggctttattgcctaccaaaggttctgatgagttcaggcctttcattcgccaccactcggagttcaagttctggtattccatcacaaaggctttcattattgcatttatcatgacctttatccttgtgttggatgtgcctcgtgcccactatgcatcttcatcgttggctcatataggcaacgccacaattcatctccaagaatattgtgataccaccatcagaagccagcctaactactactctgccagagcctcaattcccaaaggacaacgaggtcctaagtcgagatctaacctccatgacatcattaggagccctggatcccaaatcttccagtcaccagcagccaccaatccaaatgggcaacgaaccaaagtcaaccgtgagccccaattcgagccaatcagaggaggagataaagctactatctcaaaacgggttaaggatctcgacttcttggagaaaaaggataaaaaggagagatggtttggaccgcactcgacagctacgacaccaggaaagggccggatgtttgctctatcagagatggaggaagctgcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

197

Amino Acids

22.24

Weight (kDa)

9.46

Isoelectric Point (pI)

51.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 7 - 56 4.4e-16 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 303
AciI CCGC 1 cut(s) 524
AclWI GGATC 3 cut(s) 345, 358, 483
AfiI CCNNNNNNNGG 5 cut(s) 47, 85, 157, 437, 551
AgsI TTSAA 2 cut(s) 17, 94
AjnI CCWGG 3 cut(s) 6, 346, 544
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
AluBI AGCT 4 cut(s) 20, 452, 536, 587
AluI AGCT 4 cut(s) 20, 452, 536, 587
AlwI GGATC 3 cut(s) 345, 358, 483
AoxI GGCC 2 cut(s) 65, 553
ApeKI GCWGC 2 cut(s) 374, 587
AspS9I GGNCC 4 cut(s) 4, 305, 521, 553
AsuHPI GGTGA 1 cut(s) 360
AvaII GGWCC 3 cut(s) 4, 305, 521
BaeGI GKGCMC 1 cut(s) 175
BamHI GGATCC 1 cut(s) 350
BanII GRGCYC 2 cut(s) 347, 420
BauI CACGAG 1 cut(s) 168
BbvI GCAGC 2 cut(s) 386, 574
BccI CCATC 5 cut(s) 20, 116, 254, 507, 571
BcgI CGANNNNNNTGC 2 cut(s) 171, 205
BciT130I CCWGG 3 cut(s) 8, 348, 546
BglII AGATCT 1 cut(s) 317
BisI GCNGC 2 cut(s) 375, 588
BlsI GCNGC 2 cut(s) 376, 589
Bme1390I CCNGG 3 cut(s) 8, 348, 546
Bme18I GGWCC 3 cut(s) 4, 305, 521
BmgT120I GGNCC 4 cut(s) 4, 305, 521, 553
BmiI GGNNCC 2 cut(s) 344, 352
BmrFI CCNGG 3 cut(s) 8, 348, 546
BmsI GCATC 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 346
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 500, 530
Bsc4I CCNNNNNNNGG 5 cut(s) 47, 85, 157, 437, 551
Bse1I ACTGG 1 cut(s) 364
BseBI CCWGG 3 cut(s) 8, 348, 546
BseDI CCNNGG 1 cut(s) 346
BseGI GGATG 3 cut(s) 31, 166, 564
BseLI CCNNNNNNNGG 5 cut(s) 47, 85, 157, 437, 551
BseNI ACTGG 1 cut(s) 364
BseRI GAGGAG 2 cut(s) 453, 456
BseSI GKGCMC 1 cut(s) 175
BseXI GCAGC 2 cut(s) 386, 574
BshFI GGCC 2 cut(s) 67, 555
BsiSI CCGG 1 cut(s) 556
BslI CCNNNNNNNGG 5 cut(s) 47, 85, 157, 437, 551
BsnI GGCC 2 cut(s) 67, 555
Bsp1286I GDGCHC 3 cut(s) 175, 347, 420
Bsp143I GATC 3 cut(s) 317, 350, 475
BspACI CCGC 1 cut(s) 524
BspANI GGCC 2 cut(s) 67, 555
BspHI TCATGA 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 344, 352
BspPI GGATC 3 cut(s) 345, 358, 483
BsrI ACTGG 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 346
BssMI GATC 3 cut(s) 317, 350, 475
BssSI CACGAG 1 cut(s) 168
Bst2BI CACGAG 1 cut(s) 168
Bst2UI CCWGG 3 cut(s) 8, 348, 546
Bst4CI ACNGT 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 309
BstENI CCTNNNNNAGG 1 cut(s) 45
BstF5I GGATG 3 cut(s) 31, 166, 564
BstKTI GATC 3 cut(s) 320, 353, 478
BstMBI GATC 3 cut(s) 317, 350, 475
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 3 cut(s) 8, 348, 546
BstSCI CCNGG 3 cut(s) 6, 346, 544
BstSLI GKGCMC 1 cut(s) 175
BstV1I GCAGC 2 cut(s) 386, 574
BstX2I RGATCY 3 cut(s) 317, 350, 475
BstYI RGATCY 3 cut(s) 317, 350, 475
BsuRI GGCC 2 cut(s) 67, 555
BtsCI GGATG 3 cut(s) 31, 166, 564
Cac8I GCNNGC 1 cut(s) 257
CciI TCATGA 1 cut(s) 138
Cfr13I GGNCC 4 cut(s) 4, 305, 521, 553
CviAII CATG 2 cut(s) 139, 329
DdeI CTNAG 1 cut(s) 309
DpnI GATC 3 cut(s) 319, 352, 477
DpnII GATC 3 cut(s) 317, 350, 475
DrdI GACNNNNNNGTC 1 cut(s) 303
DseDI GACNNNNNNGTC 1 cut(s) 303
Eco147I AGGCCT 1 cut(s) 67
Eco24I GRGCYC 2 cut(s) 347, 420
Eco47I GGWCC 3 cut(s) 4, 305, 521
EcoNI CCTNNNNNAGG 1 cut(s) 45
EcoO109I RGGNCCY 1 cut(s) 305
EcoRII CCWGG 3 cut(s) 6, 346, 544
EcoT22I ATGCAT 1 cut(s) 184
EcoT38I GRGCYC 2 cut(s) 347, 420
FaeI CATG 2 cut(s) 142, 332
FaiI YATR 6 cut(s) 140, 180, 201, 203, 330, 592
FatI CATG 2 cut(s) 138, 328
Fnu4HI GCNGC 2 cut(s) 375, 588
FokI GGATG 3 cut(s) 38, 173, 571
FriOI GRGCYC 2 cut(s) 347, 420
Fsp4HI GCNGC 2 cut(s) 375, 588
GluI GCNGC 2 cut(s) 375, 588
HaeIII GGCC 2 cut(s) 67, 555
HapII CCGG 1 cut(s) 556
Hin1II CATG 2 cut(s) 142, 332
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 18
HpaII CCGG 1 cut(s) 556
HphI GGTGA 1 cut(s) 360
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 5 cut(s) 55, 88, 251, 437, 574
Hpy188III TCNNGA 3 cut(s) 139, 315, 479
Hpy8I GTNNAC 1 cut(s) 409
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4V TGCA 3 cut(s) 131, 182, 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 309
Hsp92II CATG 2 cut(s) 142, 332
Kzo9I GATC 3 cut(s) 317, 350, 475
LmnI GCTCC 1 cut(s) 342
Lsp1109I GCAGC 2 cut(s) 386, 574
LweI GCATC 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 366
MalI GATC 3 cut(s) 319, 352, 477
MboI GATC 3 cut(s) 317, 350, 475
MboII GAAGA 2 cut(s) 177, 352
MflI RGATCY 3 cut(s) 317, 350, 475
MhlI GDGCHC 3 cut(s) 175, 347, 420
MluCI AATT 4 cut(s) 12, 216, 285, 422
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 7 cut(s) 177, 292, 296, 335, 431, 434, 574
Mph1103I ATGCAT 1 cut(s) 184
MseI TTAA 1 cut(s) 471
MspI CCGG 1 cut(s) 556
MspR9I CCNGG 3 cut(s) 8, 348, 546
MvaI CCWGG 3 cut(s) 8, 348, 546
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 3 cut(s) 317, 350, 475
NlaIII CATG 2 cut(s) 142, 332
NlaIV GGNNCC 2 cut(s) 344, 352
NmuCI GTSAC 1 cut(s) 366
NsiI ATGCAT 1 cut(s) 184
PagI TCATGA 1 cut(s) 138
PceI AGGCCT 1 cut(s) 67
PcsI WCGNNNNNNNCGW 1 cut(s) 536
PkrI GCNGC 2 cut(s) 376, 589
PpuMI RGGWCCY 1 cut(s) 305
Psp5II RGGWCCY 1 cut(s) 305
Psp6I CCWGG 3 cut(s) 6, 346, 544
PspGI CCWGG 3 cut(s) 6, 346, 544
PspN4I GGNNCC 2 cut(s) 344, 352
PspPI GGNCC 4 cut(s) 4, 305, 521, 553
PspPPI RGGWCCY 1 cut(s) 305
PsuI RGATCY 3 cut(s) 317, 350, 475
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 2 cut(s) 375, 588
Sau3AI GATC 3 cut(s) 317, 350, 475
Sau96I GGNCC 4 cut(s) 4, 305, 521, 553
ScrFI CCNGG 3 cut(s) 8, 348, 546
SduI GDGCHC 3 cut(s) 175, 347, 420
SetI ASST 9 cut(s) 9, 22, 52, 146, 307, 327, 454, 538, 589
SfaNI GCATC 1 cut(s) 191
SinI GGWCC 3 cut(s) 4, 305, 521
Sse9I AATT 4 cut(s) 12, 216, 285, 422
SseBI AGGCCT 1 cut(s) 67
SsiI CCGC 1 cut(s) 524
SspI AATATT 1 cut(s) 233
StuI AGGCCT 1 cut(s) 67
StyD4I CCNGG 3 cut(s) 6, 346, 544
TaaI ACNGT 1 cut(s) 413
TaqI TCGA 4 cut(s) 314, 426, 480, 530
TasI AATT 4 cut(s) 12, 216, 285, 422
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TseFI GTSAC 1 cut(s) 366
TseI GCWGC 2 cut(s) 374, 587
Tsp45I GTSAC 1 cut(s) 366
TspDTI ATGAA 4 cut(s) 61, 112, 177, 209
VpaK11BI GGWCC 3 cut(s) 4, 305, 521
XagI CCTNNNNNAGG 1 cut(s) 45
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.