Rmu_sc0000396.1_g000006

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000396.1
N/A
Physical Location & Seq
Reverse (-)
19162 .. 19488
327 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
atgactcgtcatatggatgatccgctccagtacgagtgtatgaatgaagaagaccccagaaggctgtgggtctcactcgatgaaagatttggcaacgtccgtgactccgtgctccctgacctagaagttagatggcatagcctccacttctgtgatttcaagtcagttcttgactacaactcggaagcacttcgcattaaatccttaatagaattctgtggtaaagagatcacaaatgtgatactgattgagaagactctctctaccttcctcgtctctacattgatggttgctaagaactatcgaatcgatgttactgcaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

12.77

Weight (kDa)

5.32

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 25
AciI CCGC 1 cut(s) 23
AclWI GGATC 1 cut(s) 14
AcsI RAATTY 1 cut(s) 212
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 1 cut(s) 160
AleI CACNNNNGTG 2 cut(s) 150, 236
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 2 cut(s) 76, 280
AlwI GGATC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 189
BbsI GAAGAC 2 cut(s) 57, 260
Bbv12I GWGCWC 1 cut(s) 114
BccI CCATC 2 cut(s) 126, 280
BcgI CGANNNNNNTGC 1 cut(s) 299
BcoDI GTCTC 2 cut(s) 76, 280
BfaI CTAG 1 cut(s) 122
BpiI GAAGAC 2 cut(s) 57, 260
BpmI CTGGAG 1 cut(s) 11
Bsa29I ATCGAT 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 28
BseCI ATCGAT 1 cut(s) 309
BseGI GGATG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 28
BshVI ATCGAT 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 114
BsmAI GTCTC 2 cut(s) 76, 280
BsmBI CGTCTC 1 cut(s) 280
Bso31I GGTCTC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 2 cut(s) 19, 228
BspACI CCGC 1 cut(s) 23
BspDI ATCGAT 1 cut(s) 309
BspPI GGATC 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 76
BsrBI CCGCTC 1 cut(s) 25
BsrI ACTGG 1 cut(s) 28
BssMI GATC 2 cut(s) 19, 228
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 2 cut(s) 22, 231
BstMAI GTCTC 2 cut(s) 76, 280
BstMBI GATC 2 cut(s) 19, 228
BstV2I GAAGAC 2 cut(s) 57, 260
Bsu15I ATCGAT 1 cut(s) 309
BsuTUI ATCGAT 1 cut(s) 309
BtsCI GGATG 1 cut(s) 22
ClaI ATCGAT 1 cut(s) 309
Csp6I GTAC 1 cut(s) 31
CviJI RGCY 2 cut(s) 64, 141
CviKI_1 RGCY 2 cut(s) 64, 141
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 21, 230
DpnII GATC 2 cut(s) 19, 228
Eco31I GGTCTC 1 cut(s) 76
EcoRI GAATTC 1 cut(s) 212
Esp3I CGTCTC 1 cut(s) 280
FaiI YATR 4 cut(s) 12, 14, 41, 138
FauNDI CATATG 1 cut(s) 12
FokI GGATG 1 cut(s) 29
FspBI CTAG 1 cut(s) 122
GsuI CTGGAG 1 cut(s) 11
HinfI GANTC 4 cut(s) 4, 104, 256, 306
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 1 cut(s) 170
HpyAV CCTTC 2 cut(s) 54, 277
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 320
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 96
Kzo9I GATC 2 cut(s) 19, 228
LmnI GCTCC 2 cut(s) 30, 117
LpnPI CCDG 3 cut(s) 41, 70, 129
MaeI CTAG 1 cut(s) 122
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 101, 313
MalI GATC 2 cut(s) 21, 230
MbiI CCGCTC 1 cut(s) 25
MboI GATC 2 cut(s) 19, 228
MboII GAAGA 3 cut(s) 59, 62, 265
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 1 cut(s) 212
MlyI GAGTC 2 cut(s) 98, 250
MnlI CCTC 2 cut(s) 152, 281
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 2 cut(s) 198, 206
MslI CAYNNNNRTG 3 cut(s) 15, 150, 236
NdeI CATATG 1 cut(s) 12
NdeII GATC 2 cut(s) 19, 228
NmuCI GTSAC 1 cut(s) 101
OliI CACNNNNGTG 2 cut(s) 150, 236
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 306
PleI GAGTC 2 cut(s) 98, 250
PpsI GAGTC 2 cut(s) 98, 250
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 3 cut(s) 15, 150, 236
SaqAI TTAA 2 cut(s) 198, 206
Sau3AI GATC 2 cut(s) 19, 228
SchI GAGTC 2 cut(s) 98, 250
SduI GDGCHC 1 cut(s) 114
SetI ASST 3 cut(s) 99, 123, 269
SmiMI CAYNNNNRTG 3 cut(s) 15, 150, 236
Sse9I AATT 1 cut(s) 212
SsiI CCGC 1 cut(s) 23
SspMI CTAG 1 cut(s) 122
TaiI ACGT 1 cut(s) 99
TaqI TCGA 3 cut(s) 78, 304, 309
TasI AATT 1 cut(s) 212
TfiI GAWTC 1 cut(s) 306
Tru1I TTAA 2 cut(s) 198, 206
Tru9I TTAA 2 cut(s) 198, 206
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 3 cut(s) 56, 60, 96
TspGWI ACGGA 2 cut(s) 89, 97
XapI RAATTY 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.